cluster # 1889

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1889 cluster # 1889 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1889#0 length = 296 sequences # 1

consensus_1889#1 length = 136 sequences # 1

consensusID : consensus_1889#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTCAACAATTGAACACTTTTTATTCATGGAAAACGGGAATGAACCCCAAAACCATTAAACCTTAACTTTTTAAGGGTCAACCCTTTAAAAAATGAAAAGGGCCAACCCAACCCAATTCAATTGGAACTGCAACCCGGACCAAATGGGAAAATCAATTTGGGAATTTAAACAGGCCCCATCCCCATGGTTTGGAAACCACCATTGGTGCAAAAGGGGATTCCCCTATACATACCCTTTGGGACCCAAAACAAAATTTTTAACTTTTCCAAAAAAGGGAAA]

[+] EMBL CF282041             [TTTTTTTTTTTTTTTTTTTCAACAATTGAACACTTTTTATTCATGGAAAACGGGAATGAACCCCAAAACCATTAAACCTTAACTTTTTAAGGGTCAACCCTTTAAAAAATGAAAAGGGCCAACCCAACCCAATTCAATTGGAACTGCAACCCGGACCAAATGGGAAAATCAATTTGGGAATTTAAACAGGCCCCATCCCCATGGTTTGGAAACCACCATTGGTGCAAAAGGGGATTCCCCTATACATACCCTTTGGGACCCAAAACAAAATTTTTAACTTTTCCAAAAAAGGGAAA]




>consensus_1889#0
TTTTTTTTTTTTTTTTTTTCAACAATTGAACACTTTTTATTCATGGAAAACGGGAATGAA
CCCCAAAACCATTAAACCTTAACTTTTTAAGGGTCAACCCTTTAAAAAATGAAAAGGGCC
AACCCAACCCAATTCAATTGGAACTGCAACCCGGACCAAATGGGAAAATCAATTTGGGAA
TTTAAACAGGCCCCATCCCCATGGTTTGGAAACCACCATTGGTGCAAAAGGGGATTCCCC
TATACATACCCTTTGGGACCCAAAACAAAATTTTTAACTTTTCCAAAAAAGGGAAA

consensusID : consensus_1889#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 136
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTCCAACAATGGATCATTTTTATTCATGTAAACCGGAAATGACCCCAAAACCATTAAACCTTAACCTTTTTAAGGGTCAACCCTTTAAAAATTTCTACTCCTTCAGCCCAT]

[+] EMBL CF327101             [TTTTTTTTTTTTTTTTTTTTTTTTTTTCCAACAATGGATCATTTTTATTCATGTAAACCGGAAATGACCCCAAAACCATTAAACCTTAACCTTTTTAAGGGTCAACCCTTTAAAAATTTCTACTCCTTCAGCCCAT]




>consensus_1889#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTCCAACAATGGATCATTTTTATTCATGTAAACCG
GAAATGACCCCAAAACCATTAAACCTTAACCTTTTTAAGGGTCAACCCTTTAAAAATTTC
TACTCCTTCAGCCCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1889#0      ---------TTTTTTTTTTTTTTTTTTTCAACAATTGAACACTTTTTATTCATGGAAAAC 51
consensus_1889#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTCCAACAATGGATCA-TTTTTATTCATGTAAACC 59
                               ****************** ******* ** ** ************ *** *

consensus_1889#0      GGGAATGAACCCCAAAACCATTAAACCTTAAC-TTTTTAAGGGTCAACCCTTTAAAAAAT 110
consensus_1889#1      GGAAATGA-CCCCAAAACCATTAAACCTTAACCTTTTTAAGGGTCAACCCTTTAAAAATT 118
                      ** ***** *********************** ************************* *

consensus_1889#0      GAAAAGGGCCAACCCAACCCAATTCAATTGGAACTGCAACCCGGACCAAATGGGAAAATC 170
consensus_1889#1      TCTA----CTCCTTCAGCCCAT-------------------------------------- 136
                         *    *     ** ****                                       

consensus_1889#0      AATTTGGGAATTTAAACAGGCCCCATCCCCATGGTTTGGAAACCACCATTGGTGCAAAAG 230
consensus_1889#1      ------------------------------------------------------------
                                                                                  

consensus_1889#0      GGGATTCCCCTATACATACCCTTTGGGACCCAAAACAAAATTTTTAACTTTTCCAAAAAA 290
consensus_1889#1      ------------------------------------------------------------
                                                                                  

consensus_1889#0      GGGAAA 296
consensus_1889#1      ------