cluster # 1900

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Oryza sativa
cluster # 1900 cluster # 1900 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1900#0 length = 591 sequences # 1

consensus_1900#1 length = 533 sequences # 1

consensusID : consensus_1900#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [TCGTGCCGAATTCGGCACGAGAGGAATCTCCATGATACAAAACAAAACCAACCCTACATGTGTTCTATTGCTGACACACGGCAGTTGTAACTACATGTTAAATGGTGGCATACTATACACCTGTACAATACACGCAACAAACAATAACCACTTACATGCCATCCTCCACCCTGAAATAGAAAACCATTTTTAGCATGTTGGTGCTTCATTTTGTATTCCATTGGGGTATAAAAATGGTACAAAACAACCATTTTTAACCCAATTTTGTTATTCCTTTGCGGATATAAATATGGTATACATTGTAACTTGATATCCCCCAACCGGGGGGCCTCAGGTAAAACTCCAAGGGGGGGGGCCCCGGGTACCCAAATTCCCCCTATAGTGAGTTCCTTATTTACAATTCACTTGGCCGTCCTTTTTTACAACTTCCTTGNACTGGGGAAAAACCCCNTGNCCTTTACCCCAACTTTAATCCCCCTTTGCAACAAATTCCCCCCTTTCCCCCACTTGGCCTTAATNACCCAAAAAAAGGCCCCCCCCCNTTCCCCCCTTCCCCAACAATTTCCCCCNCCCCTGAATTNCCNAAATGGC]

[+] EMBL AA754036             [TCGTGCCGAATTCGGCACGAGAGGAATCTCCATGATACAAAACAAAACCAACCCTACATGTGTTCTATTGCTGACACACGGCAGTTGTAACTACATGTTAAATGGTGGCATACTATACACCTGTACAATACACGCAACAAACAATAACCACTTACATGCCATCCTCCACCCTGAAATAGAAAACCATTTTTAGCATGTTGGTGCTTCATTTTGTATTCCATTGGGGTATAAAAATGGTACAAAACAACCATTTTTAACCCAATTTTGTTATTCCTTTGCGGATATAAATATGGTATACATTGTAACTTGATATCCCCCAACCGGGGGGCCTCAGGTAAAACTCCAAGGGGGGGGGCCCCGGGTACCCAAATTCCCCCTATAGTGAGTTCCTTATTTACAATTCACTTGGCCGTCCTTTTTTACAACTTCCTTGNACTGGGGAAAAACCCCNTGNCCTTTACCCCAACTTTAATCCCCCTTTGCAACAAATTCCCCCCTTTCCCCCACTTGGCCTTAATNACCCAAAAAAAGGCCCCCCCCCNTTCCCCCCTTCCCCAACAATTTCCCCCNCCCCTGAATTNCCNAAATGGC]




>consensus_1900#0
TCGTGCCGAATTCGGCACGAGAGGAATCTCCATGATACAAAACAAAACCAACCCTACATG
TGTTCTATTGCTGACACACGGCAGTTGTAACTACATGTTAAATGGTGGCATACTATACAC
CTGTACAATACACGCAACAAACAATAACCACTTACATGCCATCCTCCACCCTGAAATAGA
AAACCATTTTTAGCATGTTGGTGCTTCATTTTGTATTCCATTGGGGTATAAAAATGGTAC
AAAACAACCATTTTTAACCCAATTTTGTTATTCCTTTGCGGATATAAATATGGTATACAT
TGTAACTTGATATCCCCCAACCGGGGGGCCTCAGGTAAAACTCCAAGGGGGGGGGCCCCG
GGTACCCAAATTCCCCCTATAGTGAGTTCCTTATTTACAATTCACTTGGCCGTCCTTTTT
TACAACTTCCTTGNACTGGGGAAAAACCCCNTGNCCTTTACCCCAACTTTAATCCCCCTT
TGCAACAAATTCCCCCCTTTCCCCCACTTGGCCTTAATNACCCAAAAAAAGGCCCCCCCC
CNTTCCCCCCTTCCCCAACAATTTCCCCCNCCCCTGAATTNCCNAAATGGC

consensusID : consensus_1900#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence

                              [AGGGGGGCCGCCGTCTTGGTAAGGCTCGCCTCTCCGCGGATGCTCGCAAGAGAAAGCTGAAAAAGCTCGGAGATTGTGTGTTGACATCAGCTTCGTCTCTTTATGTCTGTGAGATGGGAGTTAAATGACAGCACGAAATTCCATTCTCTTTAGGTGCACTGGTGCAGTCCTCCCCACCTACAAGGATCAGCCACCATCACTGCCGCTGCTGCACCATTGCAGCTTTCCTTTCTGGAATCTCCATGATACAAAACAAAACCAACCCTAGATGTGTTCTATTGCTGACACAGGGAGTTGTAAGTACATGTTAAATGGTGGCATACTATACAGCTGTACAATAGACGCAAGAAACAATAACCACTTACATGCCATCCTCCACCCTGAAATAGAAAACCATTTTTAGCATGTTGGTGCTTCATTTTGTATTCCATTGGGATATAAAAATGGTAGAGAACAACCATTTTTAACCCAATTTTGTATTCCTTTGCGGATATAAATATGGTATAGATTGTAACTTGATATCTGGACTCAAA]

[+] EMBL CA765775             [AGGGGGGCCGCCGTCTTGGTAAGGCTCGCCTCTCCGCGGATGCTCGCAAGAGAAAGCTGAAAAAGCTCGGAGATTGTGTGTTGACATCAGCTTCGTCTCTTTATGTCTGTGAGATGGGAGTTAAATGACAGCACGAAATTCCATTCTCTTTAGGTGCACTGGTGCAGTCCTCCCCACCTACAAGGATCAGCCACCATCACTGCCGCTGCTGCACCATTGCAGCTTTCCTTTCTGGAATCTCCATGATACAAAACAAAACCAACCCTAGATGTGTTCTATTGCTGACACAGGGAGTTGTAAGTACATGTTAAATGGTGGCATACTATACAGCTGTACAATAGACGCAAGAAACAATAACCACTTACATGCCATCCTCCACCCTGAAATAGAAAACCATTTTTAGCATGTTGGTGCTTCATTTTGTATTCCATTGGGATATAAAAATGGTAGAGAACAACCATTTTTAACCCAATTTTGTATTCCTTTGCGGATATAAATATGGTATAGATTGTAACTTGATATCTGGACTCAAA]




>consensus_1900#1
AGGGGGGCCGCCGTCTTGGTAAGGCTCGCCTCTCCGCGGATGCTCGCAAGAGAAAGCTGA
AAAAGCTCGGAGATTGTGTGTTGACATCAGCTTCGTCTCTTTATGTCTGTGAGATGGGAG
TTAAATGACAGCACGAAATTCCATTCTCTTTAGGTGCACTGGTGCAGTCCTCCCCACCTA
CAAGGATCAGCCACCATCACTGCCGCTGCTGCACCATTGCAGCTTTCCTTTCTGGAATCT
CCATGATACAAAACAAAACCAACCCTAGATGTGTTCTATTGCTGACACAGGGAGTTGTAA
GTACATGTTAAATGGTGGCATACTATACAGCTGTACAATAGACGCAAGAAACAATAACCA
CTTACATGCCATCCTCCACCCTGAAATAGAAAACCATTTTTAGCATGTTGGTGCTTCATT
TTGTATTCCATTGGGATATAAAAATGGTAGAGAACAACCATTTTTAACCCAATTTTGTAT
TCCTTTGCGGATATAAATATGGTATAGATTGTAACTTGATATCTGGACTCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1900#0      ------------------------------------------------------------
consensus_1900#1      AGGGGGGCCGCCGTCTTGGTAAGGCTCGCCTCTCCGCGGATGCTCGCAAGAGAAAGCTGA 60
                                                                                  

consensus_1900#0      ------------------------------------------------------------
consensus_1900#1      AAAAGCTCGGAGATTGTGTGTTGACATCAGCTTCGTCTCTTTATGTCTGTGAGATGGGAG 120
                                                                                  

consensus_1900#0      ------------------------------------------------------------
consensus_1900#1      TTAAATGACAGCACGAAATTCCATTCTCTTTAGGTGCACTGGTGCAGTCCTCCCCACCTA 180
                                                                                  

consensus_1900#0      -------------------------------TCGTGCCGAATTCGGCACGAGAGGAATCT 29
consensus_1900#1      CAAGGATCAGCCACCATCACTGCCGCTGCTGCACCATTGCAGCTTTCCTTTCTGGAATCT 240
                                                            * *     *      *******

consensus_1900#0      CCATGATACAAAACAAAACCAACCCTACATGTGTTCTATTGCTGACACACGGCAGTTGTA 89
consensus_1900#1      CCATGATACAAAACAAAACCAACCCTAGATGTGTTCTATTGCTGACACA-GGGAGTTGTA 299
                      *************************** ********************* ** *******

consensus_1900#0      ACTACATGTTAAATGGTGGCATACTATACACCTGTACAATACACGCAACAAACAATAACC 149
consensus_1900#1      AGTACATGTTAAATGGTGGCATACTATACAGCTGTACAATAGACGCAAGAAACAATAACC 359
                      * **************************** ********** ****** ***********

consensus_1900#0      ACTTACATGCCATCCTCCACCCTGAAATAGAAAACCATTTTTAGCATGTTGGTGCTTCAT 209
consensus_1900#1      ACTTACATGCCATCCTCCACCCTGAAATAGAAAACCATTTTTAGCATGTTGGTGCTTCAT 419
                      ************************************************************

consensus_1900#0      TTTGTATTCCATTGGGGTATAAAAATGGTACAAAACAACCATTTTTAACCCAATTTTGTT 269
consensus_1900#1      TTTGTATTCCATTGGGATATAAAAATGGTAGAGAACAACCATTTTTAACCCAATTTTGT- 478
                      **************** ************* * ************************** 

consensus_1900#0      ATTCCTTTGCGGATATAAATATGGTATACATTGTAACTTGATATCCCCCAACCGGGGGGC 329
consensus_1900#1      ATTCCTTTGCGGATATAAATATGGTATAGATTGTAACTTGATATCT--GGACTCAAA--- 533
                      **************************** ****************     **        

consensus_1900#0      CTCAGGTAAAACTCCAAGGGGGGGGGCCCCGGGTACCCAAATTCCCCCTATAGTGAGTTC 389
consensus_1900#1      ------------------------------------------------------------
                                                                                  

consensus_1900#0      CTTATTTACAATTCACTTGGCCGTCCTTTTTTACAACTTCCTTGNACTGGGGAAAAACCC 449
consensus_1900#1      ------------------------------------------------------------
                                                                                  

consensus_1900#0      CNTGNCCTTTACCCCAACTTTAATCCCCCTTTGCAACAAATTCCCCCCTTTCCCCCACTT 509
consensus_1900#1      ------------------------------------------------------------
                                                                                  

consensus_1900#0      GGCCTTAATNACCCAAAAAAAGGCCCCCCCCCNTTCCCCCCTTCCCCAACAATTTCCCCC 569
consensus_1900#1      ------------------------------------------------------------
                                                                                  

consensus_1900#0      NCCCCTGAATTNCCNAAATGGC 591
consensus_1900#1      ----------------------