cluster # 1922

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Oryza sativa
cluster # 1922 cluster # 1922 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1922#0 length = 1523 sequences # 1

consensus_1922#1 length = 696 sequences # 1

consensusID : consensus_1922#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1523
fasta sequence

                              [GATCCGATAATCTCGCCCCCCATCTTCTTGTATTCCCCTCGCTCCTGCTGCCGCTCACCTCGGCCGCCGGCGTGATGCTACTGGCGCAACCATCGGATCCCTGCGCACGAGCTCCGGCCTGTCGCTCCCACCACCCGTGACCTCCATTGCTGCCAACGTTGGCCGTGCGCTCTCACCACCACCATCTCCAGATCCTTGCCGAAGTGCTCCCGCCACCACAACCCCAACGGCGGTGGTTCTTCCCCAAGTTCTCACCGGGCACACGAGGGAGGAAGGAGGCTTGATTTGGTGCCCCCACCCCCCTTTGCAAAAATCAGGAGGTTGAGAGCTGATTAGTGATTGCTCGCTGGAGGTGCTGCCTGGGGGCTACATCGAGCAAAAGGGTCACAACAGGAAGTGTGCATGACTACAGGTAACCGGGTAACTGGGAATGAATTGATGCCATCAGTTAAGCAGGCTCAATGTTTGATGTGAAATTCAGGGACAGCTTCACTCTTCGTGGTCCTATAATCTTTATCAGGATTGGAATTTTGGAACTTAACTATAGGATTAATCATTGTGTTGGTAAATGTGTCGCCGTGTATTAAATTTCTCTTTCAGTTTTTAGATCAAGAATTCGCTCTTTGATCAACTGTTACTGAATTATAATACAATTGGGCATATGTGTAGGAACTTTGCAACGTTTATGTGTTGATAATTATGCTGCCCCCATTCATGACCTCATCCCTAGTCCCCCATGAAGACTCTACCAGGAACAAAATTCAGGATGATGCCTCCTGGTCCGAACAGTTTAGGGAAAACTCAATAGAGCCAGAGGATCTACACAAGCCTTCTATTCATTGTTTTAAATTGCCATCAGTTTCATCAAACATAATTCTATCTAATTTGTGCTCTGTATTGCTTGAGTTAATTAATGAATTATCATCCAAAGCATAACTTGTAGTGAACTTATTTGCTACAAAGTGTTATATTGTTCCATTTAGCTATTGAAGTTAAATTGTTCTTATTTATATATTGCAGTCGAATATTGTTTAAGAAATAAATACTAAGTTTGCAAAACTTATCAATTGATTTCTAGACTGTAACTGTACTAAAGTATTTTGCTTCTCAGTATCCTTCTTTTTATATTTAGGTAACTGAACTAACATATATTAGGTTATCAGAACAACATCACTGGAGGTAAATTTTGCTCTCAAATAAGTTATATATTACATGCCAAATATAATGTATATTAACTAGTATAATCCTTGCCAGTGGTAGGATTTATGATGAAATGGATGAGGAAGGTGCAGTCGAAGACATATTGAAGGGTTGTTTCTCTATATAATGATTAGCGGTTCTATCCATAAGACCTCCAGATCGAAGAATATTTTTTTGTCATATGTAACATTGAAGCTCGGGTGTCCCAGTTAGATTAGGTATCACAATGTATCCCTGAATATTTTATTACAATCGATTCAAGAATGATATCATTATTCTTGTACTGATTGTTTTGAAATATTGCTATGTTGTGCAATAATATA]

[+] EMBL AK070668             [GATCCGATAATCTCGCCCCCCATCTTCTTGTATTCCCCTCGCTCCTGCTGCCGCTCACCTCGGCCGCCGGCGTGATGCTACTGGCGCAACCATCGGATCCCTGCGCACGAGCTCCGGCCTGTCGCTCCCACCACCCGTGACCTCCATTGCTGCCAACGTTGGCCGTGCGCTCTCACCACCACCATCTCCAGATCCTTGCCGAAGTGCTCCCGCCACCACAACCCCAACGGCGGTGGTTCTTCCCCAAGTTCTCACCGGGCACACGAGGGAGGAAGGAGGCTTGATTTGGTGCCCCCACCCCCCTTTGCAAAAATCAGGAGGTTGAGAGCTGATTAGTGATTGCTCGCTGGAGGTGCTGCCTGGGGGCTACATCGAGCAAAAGGGTCACAACAGGAAGTGTGCATGACTACAGGTAACCGGGTAACTGGGAATGAATTGATGCCATCAGTTAAGCAGGCTCAATGTTTGATGTGAAATTCAGGGACAGCTTCACTCTTCGTGGTCCTATAATCTTTATCAGGATTGGAATTTTGGAACTTAACTATAGGATTAATCATTGTGTTGGTAAATGTGTCGCCGTGTATTAAATTTCTCTTTCAGTTTTTAGATCAAGAATTCGCTCTTTGATCAACTGTTACTGAATTATAATACAATTGGGCATATGTGTAGGAACTTTGCAACGTTTATGTGTTGATAATTATGCTGCCCCCATTCATGACCTCATCCCTAGTCCCCCATGAAGACTCTACCAGGAACAAAATTCAGGATGATGCCTCCTGGTCCGAACAGTTTAGGGAAAACTCAATAGAGCCAGAGGATCTACACAAGCCTTCTATTCATTGTTTTAAATTGCCATCAGTTTCATCAAACATAATTCTATCTAATTTGTGCTCTGTATTGCTTGAGTTAATTAATGAATTATCATCCAAAGCATAACTTGTAGTGAACTTATTTGCTACAAAGTGTTATATTGTTCCATTTAGCTATTGAAGTTAAATTGTTCTTATTTATATATTGCAGTCGAATATTGTTTAAGAAATAAATACTAAGTTTGCAAAACTTATCAATTGATTTCTAGACTGTAACTGTACTAAAGTATTTTGCTTCTCAGTATCCTTCTTTTTATATTTAGGTAACTGAACTAACATATATTAGGTTATCAGAACAACATCACTGGAGGTAAATTTTGCTCTCAAATAAGTTATATATTACATGCCAAATATAATGTATATTAACTAGTATAATCCTTGCCAGTGGTAGGATTTATGATGAAATGGATGAGGAAGGTGCAGTCGAAGACATATTGAAGGGTTGTTTCTCTATATAATGATTAGCGGTTCTATCCATAAGACCTCCAGATCGAAGAATATTTTTTTGTCATATGTAACATTGAAGCTCGGGTGTCCCAGTTAGATTAGGTATCACAATGTATCCCTGAATATTTTATTACAATCGATTCAAGAATGATATCATTATTCTTGTACTGATTGTTTTGAAATATTGCTATGTTGTGCAATAATATA]




>consensus_1922#0
GATCCGATAATCTCGCCCCCCATCTTCTTGTATTCCCCTCGCTCCTGCTGCCGCTCACCT
CGGCCGCCGGCGTGATGCTACTGGCGCAACCATCGGATCCCTGCGCACGAGCTCCGGCCT
GTCGCTCCCACCACCCGTGACCTCCATTGCTGCCAACGTTGGCCGTGCGCTCTCACCACC
ACCATCTCCAGATCCTTGCCGAAGTGCTCCCGCCACCACAACCCCAACGGCGGTGGTTCT
TCCCCAAGTTCTCACCGGGCACACGAGGGAGGAAGGAGGCTTGATTTGGTGCCCCCACCC
CCCTTTGCAAAAATCAGGAGGTTGAGAGCTGATTAGTGATTGCTCGCTGGAGGTGCTGCC
TGGGGGCTACATCGAGCAAAAGGGTCACAACAGGAAGTGTGCATGACTACAGGTAACCGG
GTAACTGGGAATGAATTGATGCCATCAGTTAAGCAGGCTCAATGTTTGATGTGAAATTCA
GGGACAGCTTCACTCTTCGTGGTCCTATAATCTTTATCAGGATTGGAATTTTGGAACTTA
ACTATAGGATTAATCATTGTGTTGGTAAATGTGTCGCCGTGTATTAAATTTCTCTTTCAG
TTTTTAGATCAAGAATTCGCTCTTTGATCAACTGTTACTGAATTATAATACAATTGGGCA
TATGTGTAGGAACTTTGCAACGTTTATGTGTTGATAATTATGCTGCCCCCATTCATGACC
TCATCCCTAGTCCCCCATGAAGACTCTACCAGGAACAAAATTCAGGATGATGCCTCCTGG
TCCGAACAGTTTAGGGAAAACTCAATAGAGCCAGAGGATCTACACAAGCCTTCTATTCAT
TGTTTTAAATTGCCATCAGTTTCATCAAACATAATTCTATCTAATTTGTGCTCTGTATTG
CTTGAGTTAATTAATGAATTATCATCCAAAGCATAACTTGTAGTGAACTTATTTGCTACA
AAGTGTTATATTGTTCCATTTAGCTATTGAAGTTAAATTGTTCTTATTTATATATTGCAG
TCGAATATTGTTTAAGAAATAAATACTAAGTTTGCAAAACTTATCAATTGATTTCTAGAC
TGTAACTGTACTAAAGTATTTTGCTTCTCAGTATCCTTCTTTTTATATTTAGGTAACTGA
ACTAACATATATTAGGTTATCAGAACAACATCACTGGAGGTAAATTTTGCTCTCAAATAA
GTTATATATTACATGCCAAATATAATGTATATTAACTAGTATAATCCTTGCCAGTGGTAG
GATTTATGATGAAATGGATGAGGAAGGTGCAGTCGAAGACATATTGAAGGGTTGTTTCTC
TATATAATGATTAGCGGTTCTATCCATAAGACCTCCAGATCGAAGAATATTTTTTTGTCA
TATGTAACATTGAAGCTCGGGTGTCCCAGTTAGATTAGGTATCACAATGTATCCCTGAAT
ATTTTATTACAATCGATTCAAGAATGATATCATTATTCTTGTACTGATTGTTTTGAAATA
TTGCTATGTTGTGCAATAATATA

consensusID : consensus_1922#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 696
fasta sequence

                              [GTTAGGAAACTCATTAGCCCCGGGNTTACCNCCTTTTATCCTTGTTAAATGCCACTCCAGTTTCTCCAACAATAATCTATCAATTGNGCTCNGTATGCTTGGAGTTAAATTAATGAATATCATCCCAAACCATAACTTGTAGNGAACTTATTTGCTACCAAGTGTTATATTGGTNCCATTTNAGCTATTGAAGTTAAATTGTTCTTATTTATATATCGCACGTCGAATATTGTTTAAGAAATAAATACTAAGTTTCCCAAACTTATCCATTGATAATTCTAGACTGTAACTGTACTAAAGTATTTTGCTTCTCAGTATCCTTCTTTTTATATTTAGGTAACTGAACTAACATATATTAGGTTATCAGAACAACACCNCTGGAGGTAAATTTTGCTCTCAAATAAGTTATATATTACATGCCAAATATAATGTATATTAACTAGTATAATCCTTGCCAGTGGTAGGATTTATGATGAAATGGATGAGGAAGGTCAGTCGAAGACATATTGAAGGGTTGTTTCTCTATATAATGATTAGCGGTTCTATCCATAAGACCTCCAGATCGAAGAATATTTTTTTGTCATATGTAACATTGAAGCTCGGGTGTCCCAGTGTAGATTAGGTATCACCATGTATCCCTGAATATTTTATTACCATCGATTCAAGAATGATATCATTATTCTTGTAAAAAAAAAA]

[+] EMBL BM037924             [GTTAGGAAACTCATTAGCCCCGGGNTTACCNCCTTTTATCCTTGTTAAATGCCACTCCAGTTTCTCCAACAATAATCTATCAATTGNGCTCNGTATGCTTGGAGTTAAATTAATGAATATCATCCCAAACCATAACTTGTAGNGAACTTATTTGCTACCAAGTGTTATATTGGTNCCATTTNAGCTATTGAAGTTAAATTGTTCTTATTTATATATCGCACGTCGAATATTGTTTAAGAAATAAATACTAAGTTTCCCAAACTTATCCATTGATAATTCTAGACTGTAACTGTACTAAAGTATTTTGCTTCTCAGTATCCTTCTTTTTATATTTAGGTAACTGAACTAACATATATTAGGTTATCAGAACAACACCNCTGGAGGTAAATTTTGCTCTCAAATAAGTTATATATTACATGCCAAATATAATGTATATTAACTAGTATAATCCTTGCCAGTGGTAGGATTTATGATGAAATGGATGAGGAAGGTCAGTCGAAGACATATTGAAGGGTTGTTTCTCTATATAATGATTAGCGGTTCTATCCATAAGACCTCCAGATCGAAGAATATTTTTTTGTCATATGTAACATTGAAGCTCGGGTGTCCCAGTGTAGATTAGGTATCACCATGTATCCCTGAATATTTTATTACCATCGATTCAAGAATGATATCATTATTCTTGTAAAAAAAAAA]




>consensus_1922#1
GTTAGGAAACTCATTAGCCCCGGGNTTACCNCCTTTTATCCTTGTTAAATGCCACTCCAG
TTTCTCCAACAATAATCTATCAATTGNGCTCNGTATGCTTGGAGTTAAATTAATGAATAT
CATCCCAAACCATAACTTGTAGNGAACTTATTTGCTACCAAGTGTTATATTGGTNCCATT
TNAGCTATTGAAGTTAAATTGTTCTTATTTATATATCGCACGTCGAATATTGTTTAAGAA
ATAAATACTAAGTTTCCCAAACTTATCCATTGATAATTCTAGACTGTAACTGTACTAAAG
TATTTTGCTTCTCAGTATCCTTCTTTTTATATTTAGGTAACTGAACTAACATATATTAGG
TTATCAGAACAACACCNCTGGAGGTAAATTTTGCTCTCAAATAAGTTATATATTACATGC
CAAATATAATGTATATTAACTAGTATAATCCTTGCCAGTGGTAGGATTTATGATGAAATG
GATGAGGAAGGTCAGTCGAAGACATATTGAAGGGTTGTTTCTCTATATAATGATTAGCGG
TTCTATCCATAAGACCTCCAGATCGAAGAATATTTTTTTGTCATATGTAACATTGAAGCT
CGGGTGTCCCAGTGTAGATTAGGTATCACCATGTATCCCTGAATATTTTATTACCATCGA
TTCAAGAATGATATCATTATTCTTGTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1922#0      GATCCGATAATCTCGCCCCCCATCTTCTTGTATTCCCCTCGCTCCTGCTGCCGCTCACCT 60
consensus_1922#1      ------------------------------------------------------------
                                                                                  

consensus_1922#0      CGGCCGCCGGCGTGATGCTACTGGCGCAACCATCGGATCCCTGCGCACGAGCTCCGGCCT 120
consensus_1922#1      ------------------------------------------------------------
                                                                                  

consensus_1922#0      GTCGCTCCCACCACCCGTGACCTCCATTGCTGCCAACGTTGGCCGTGCGCTCTCACCACC 180
consensus_1922#1      ------------------------------------------------------------
                                                                                  

consensus_1922#0      ACCATCTCCAGATCCTTGCCGAAGTGCTCCCGCCACCACAACCCCAACGGCGGTGGTTCT 240
consensus_1922#1      ------------------------------------------------------------
                                                                                  

consensus_1922#0      TCCCCAAGTTCTCACCGGGCACACGAGGGAGGAAGGAGGCTTGATTTGGTGCCCCCACCC 300
consensus_1922#1      ------------------------------------------------------------
                                                                                  

consensus_1922#0      CCCTTTGCAAAAATCAGGAGGTTGAGAGCTGATTAGTGATTGCTCGCTGGAGGTGCTGCC 360
consensus_1922#1      ------------------------------------------------------------
                                                                                  

consensus_1922#0      TGGGGGCTACATCGAGCAAAAGGGTCACAACAGGAAGTGTGCATGACTACAGGTAACCGG 420
consensus_1922#1      ------------------------------------------------------------
                                                                                  

consensus_1922#0      GTAACTGGGAATGAATTGATGCCATCAGTTAAGCAGGCTCAATGTTTGATGTGAAATTCA 480
consensus_1922#1      ------------------------------------------------------------
                                                                                  

consensus_1922#0      GGGACAGCTTCACTCTTCGTGGTCCTATAATCTTTATCAGGATTGGAATTTTGGAACTTA 540
consensus_1922#1      ------------------------------------------------------------
                                                                                  

consensus_1922#0      ACTATAGGATTAATCATTGTGTTGGTAAATGTGTCGCCGTGTATTAAATTTCTCTTTCAG 600
consensus_1922#1      ------------------------------------------------------------
                                                                                  

consensus_1922#0      TTTTTAGATCAAGAATTCGCTCTTTGATCAACTGTTACTGAATTATAATACAATTGGGCA 660
consensus_1922#1      ------------------------------------------------------------
                                                                                  

consensus_1922#0      TATGTGTAGGAACTTTGCAACGTTTATGTGTTGATAATTATGCTGCCCCCATTCATGACC 720
consensus_1922#1      ------------------------------------------------------------
                                                                                  

consensus_1922#0      TCATCCCTAGTCCCCCATGAAGACTCTACCAGGAACAAAATTCAGGATGATGCCTCCTGG 780
consensus_1922#1      ------------------------------------------------------------
                                                                                  

consensus_1922#0      TCCGAACAGTTTAGGGAAAACTCAATAGAGCCAGAGGATCTACACAAGCCTTCTATTCAT 840
consensus_1922#1      ---------GTTAGG--AAACTCATTAGCCCC---GGGNTTAC---CNCCTTTTATCC-T 42
                                *****  ******* ***  **   **   ***     **** *** * *

consensus_1922#0      TGTTTTAAATTGCCATCAGTTTCATCAAACATAATTCTATCTAATTTGTGCTCTGTATTG 900
consensus_1922#1      TGTTAAATGCCACT-CCAGTTTCTCCAACAATAAT-CTATCAA--TTGNGCTCNGTATGC 98
                      ****  *     *   *******  ***  ***** ***** *  *** **** ****  

consensus_1922#0      CTTGAGTTAA-TTAATGAATTATCATCC-AAAGCATAACTTGTAGTGAACTTATTTGCTA 958
consensus_1922#1      TTGGAGTTAAATTAATGAAT-ATCATCCCAAACCATAACTTGTAGNGAACTTATTTGCTA 157
                       * ******* ********* ******* *** ************ **************

consensus_1922#0      CAAAGTGTTATATTG-TTCCATTTA-GCTATTGAAGTTAAATTGTTCTTATTTATATATT 1016
consensus_1922#1      CCAAGTGTTATATTGGTNCCATTTNAGCTATTGAAGTTAAATTGTTCTTATTTATATATC 217
                      * ************* * ******  ********************************* 

consensus_1922#0      GCA-GTCGAATATTGTTTAAGAAATAAATACTAAGTTTGCAAAACTTATCAATTGAT--T 1073
consensus_1922#1      GCACGTCGAATATTGTTTAAGAAATAAATACTAAGTTTCCCAAACTTATCCATTGATAAT 277
                      *** ********************************** * ********* ******  *

consensus_1922#0      TCTAGACTGTAACTGTACTAAAGTATTTTGCTTCTCAGTATCCTTCTTTTTATATTTAGG 1133
consensus_1922#1      TCTAGACTGTAACTGTACTAAAGTATTTTGCTTCTCAGTATCCTTCTTTTTATATTTAGG 337
                      ************************************************************

consensus_1922#0      TAACTGAACTAACATATATTAGGTTATCAGAACAACATCACTGGAGGTAAATTTTGCTCT 1193
consensus_1922#1      TAACTGAACTAACATATATTAGGTTATCAGAACAACACCNCTGGAGGTAAATTTTGCTCT 397
                      ************************************* * ********************

consensus_1922#0      CAAATAAGTTATATATTACATGCCAAATATAATGTATATTAACTAGTATAATCCTTGCCA 1253
consensus_1922#1      CAAATAAGTTATATATTACATGCCAAATATAATGTATATTAACTAGTATAATCCTTGCCA 457
                      ************************************************************

consensus_1922#0      GTGGTAGGATTTATGATGAAATGGATGAGGAAGGTGCAGTCGAAGACATATTGAAGGGTT 1313
consensus_1922#1      GTGGTAGGATTTATGATGAAATGGATGAGGAAGGT-CAGTCGAAGACATATTGAAGGGTT 516
                      *********************************** ************************

consensus_1922#0      GTTTCTCTATATAATGATTAGCGGTTCTATCCATAAGACCTCCAGATCGAAGAATATTTT 1373
consensus_1922#1      GTTTCTCTATATAATGATTAGCGGTTCTATCCATAAGACCTCCAGATCGAAGAATATTTT 576
                      ************************************************************

consensus_1922#0      TTTGTCATATGTAACATTGAAGCTCGGGTGTCCCAGT-TAGATTAGGTATCACAATGTAT 1432
consensus_1922#1      TTTGTCATATGTAACATTGAAGCTCGGGTGTCCCAGTGTAGATTAGGTATCACCATGTAT 636
                      ************************************* *************** ******

consensus_1922#0      CCCTGAATATTTTATTACAATCGATTCAAGAATGATATCATTATTCTTGTACTGATTGTT 1492
consensus_1922#1      CCCTGAATATTTTATTACCATCGATTCAAGAATGATATCATTATTCTTGTAAAAAAAAAA 696
                      ****************** ********************************   *     

consensus_1922#0      TTGAAATATTGCTATGTTGTGCAATAATATA 1523
consensus_1922#1      -------------------------------