These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACTGATCTACACCCCCCGAGAGACAGGCCCTGACGATCACTCACGCAGTGCGGGTACCATATTAAATTCCTGCTAATTTATTTCATTTCTGGATAGTAGAAAAAAATAGTACTAGTACTAGCTTCTTATATTCAGAATGCGTGTTACCTGTGACCGCGCTCTTTGGAGCTCTTGCTCGATCTGCTGAAGTCTGACCCTGCTGGTCTCTAGGTTTTGCACATAAGCCTGCGAGAAAAACACACCCCGCTCGCAACGCAGTCTTTTTGACTATCAAAAAAAAAACAAA] [+] EMBL CA756088 [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACTGATCTACACCCCCCGAGAGACAGGCCCTGACGATCACTCACGCAGTGCGGGTACCATATTAAATTCCTGCTAATTTATTTCATTTCTGGATAGTAGAAAAAAATAGTACTAGTACTAGCTTCTTATATTCAGAATGCGTGTTACCTGTGACCGCGCTCTTTGGAGCTCTTGCTCGATCTGCTGAAGTCTGACCCTGCTGGTCTCTAGGTTTTGCACATAAGCCTGCGAGAAAAACACACCCCGCTCGCAACGCAGTCTTTTTGACTATCAAAAAAAAAACAAA] consensusID : consensus_1924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 162 fasta sequence [TCGGTCAGCCGCTTGCTGTCGTCGTCCAGCCAGCGCGCGTACTCCATGTCGAACATGGCCGCGCCAGAACTCATGTCGCCTGCTGCTCTGCACCCCCCAAGAAACAGGCCCTGTGACCGTGCTCTTTGGAGTTCTTGCTCGATCTGCTGAAGCCTGACCCTG] [+] EMBL CB643023 [TCGGTCAGCCGCTTGCTGTCGTCGTCCAGCCAGCGCGCGTACTCCATGTCGAACATGGCCGCGCCAGAACTCATGTCGCCTGCTGCTCTGCACCCCCCAAGAAACAGGCCCTGTGACCGTGCTCTTTGGAGTTCTTGCTCGATCTGCTGAAGCCTGACCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1924#0 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACT 60 consensus_1924#1 ------------------------------------------------------------ consensus_1924#0 GATCTACACCCCCCGAGAGACAGGCCCTGACGATCACTCACGCAGTGCGGGTACCATATT 120 consensus_1924#1 -----------------------------TCGGTCAGCCGCTTGCTGTCGTCGTC-CAGC 30 ** *** * * ** * * * consensus_1924#0 AAATTCCTGCTAATTTATTTCATTTCTGGATAGTAGAAAAAAATAGTACTAGTACTAGCT 180 consensus_1924#1 CAGCGCGCG-TACTCCATGTCGAACATGGCC-GCGCCAGAACTCATGTCGCCTGCTGCTC 88 * * * ** * ** ** *** * * ** * * * ** consensus_1924#0 TCTTATATTCAGAATGCGTGTTACCTGTGACCGCGCTCTTTGGAGCTCTTGCTCGATCTG 240 consensus_1924#1 TGCACCCCCCAAGAAACAGGC--CCTGTGACCGTGCTCTTTGGAGTTCTTGCTCGATCTG 146 * ** * * * ********** *********** ************** consensus_1924#0 CTGAAGTCTGACCCTGCTGGTCTCTAGGTTTTGCACATAAGCCTGCGAGAAAAACACACC 300 consensus_1924#1 CTGAAGCCTGACCCTG-------------------------------------------- 162 ****** ********* consensus_1924#0 CCGCTCGCAACGCAGTCTTTTTGACTATCAAAAAAAAAACAAA 343 consensus_1924#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||