These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_193#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1022 fasta sequence [TTGTTTGTTTAAGCTGTATGTGCCACACTTTCTTATTCCTGAAAAGAAGATTGGTTTCCCTCTTCAACTTCATACTCCGATGTTCTTGCCCCTCTATAGCTCATTAAAAAGTTAGTAGTTGAGTTCATCTCAGCTGCTCTTCTTCTGGTTCTTTTATCTTTTGTTTTTTTGGTGGTTCCTTGCAAGTGCTTTTTCTCGAGGAATGTCCCTTTTGGTTCTGTTGCCTGTTGGACCTCAGTTCTTATTTATTTAATGATTTGTGCTCCTCTGTAACCTGGTGTTCTCGCTTTCTAATCTGTAACGCTATACCTGTGCTTAACAGGCATCGTCAGGAATTTTTCCTCGGTTATTCCAGCATGTGCGTTGTTACGTTGAAGGATGAATTCCAAAAGAGCACTACATTAATCCTCTAGGTCACTTTGTCACCATGAAGTTCATTTTCTATCTGTTCAGTATTTTCTGTTGTCTGTGTTCCTGCGCACAAAGCCAAAACATCTCTGGGAGGCCCGATGCAGTGAGAATTGGAGCTCAGTTCGCAAGGAATTCAACAATTGGGAGAGTTGCCGCAGTTGCCGTCCTTGCTGCTGTCAATGACATCAACAATGATTCGAATATCCTTCCGGGAACAAAGCTGGATCTTCATATGCATGATTCCAGTTGCAATCGCTTTCTTGGCATTGTGCAAGCCTTGCAATTCATGGAGAAAGATACAGTGGCAATCATCGGCCCATTGTCTTCTACCACCGCCCATGTCCTTTCTCATCTTGCAAATGAACTCCACGTACCTCTGATGTCCTTTTCTGCAACTGATCCAACTCTTTCGTCACTTGAGTATCCGTTCTTTGTGCGGACTACCGTCAGTGATCAATTTCAAATGACTGCTGTTGCTGACTTAGTTGAGTATTATGGGTGGAAGCAAGTGACAACCATATTTGTGGATAATGATTATGGAAGAAATGCAATATCCTCTTTAGGCGATGAACTTTCCAAGAGGCGATCTAAGATCCTGTATAAAGCTCCAT] [+] EMBL AK073062 [TTGTTTGTTTAAGCTGTATGTGCCACACTTTCTTATTCCTGAAAAGAAGATTGGTTTCCCTCTTCAACTTCATACTCCGATGTTCTTGCCCCTCTATAGCTCATTAAAAAGTTAGTAGTTGAGTTCATCTCAGCTGCTCTTCTTCTGGTTCTTTTATCTTTTGTTTTTTTGGTGGTTCCTTGCAAGTGCTTTTTCTCGAGGAATGTCCCTTTTGGTTCTGTTGCCTGTTGGACCTCAGTTCTTATTTATTTAATGATTTGTGCTCCTCTGTAACCTGGTGTTCTCGCTTTCTAATCTGTAACGCTATACCTGTGCTTAACAGGCATCGTCAGGAATTTTTCCTCGGTTATTCCAGCATGTGCGTTGTTACGTTGAAGGATGAATTCCAAAAGAGCACTACATTAATCCTCTAGGTCACTTTGTCACCATGAAGTTCATTTTCTATCTGTTCAGTATTTTCTGTTGTCTGTGTTCCTGCGCACAAAGCCAAAACATCTCTGGGAGGCCCGATGCAGTGAGAATTGGAGCTCAGTTCGCAAGGAATTCAACAATTGGGAGAGTTGCCGCAGTTGCCGTCCTTGCTGCTGTCAATGACATCAACAATGATTCGAATATCCTTCCGGGAACAAAGCTGGATCTTCATATGCATGATTCCAGTTGCAATCGCTTTCTTGGCATTGTGCAAGCCTTGCAATTCATGGAGAAAGATACAGTGGCAATCATCGGCCCATTGTCTTCTACCACCGCCCATGTCCTTTCTCATCTTGCAAATGAACTCCACGTACCTCTGATGTCCTTTTCTGCAACTGATCCAACTCTTTCGTCACTTGAGTATCCGTTCTTTGTGCGGACTACCGTCAGTGATCAATTTCAAATGACTGCTGTTGCTGACTTAGTTGAGTATTATGGGTGGAAGCAAGTGACAACCATATTTGTGGATAATGATTATGGAAGAAATGCAATATCCTCTTTAGGCGATGAACTTTCCAAGAGGCGATCTAAGATCCTGTATAAAGCTCCAT] consensusID : consensus_193#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [GTGGCACATTTGGTGAGGCTTCGGGAGGTCACCAGAATTGTTNCTGTTCACACGGGCTGCTAGTTCTTCACAGCTATCTCGTGTCATCCGAGCAGAAGCAACTACCTACCAATAAGAGGTTGCTTCAGACCCAAATGGCATCGTCAGGAATTTTTCCTCGGTTATTCCAGCATGTGCGTTGTTACGTTGAAGGATGAATTCCAAAAGAGCACTACATTAATCCTCTAGGTCACTTTGTCACCATGAAGTTCATTTTCTATCTGTTCAGTATTTTCTGTTGTCTGTGTTCCTGCGCACAAAGCCAAAACATCTCTGGGAGGCCCGATGCAGTGAGAATTGGAGCTCAGTTCGCAAGGAATTCAACAATTGGGAGAGTTGCCGCAGTTGCCGTCCTTGCTGCTTGTCAATGACATCAACAATGATTCGAATATCCTTCCGGGACA] [+] EMBL OSS13536A [GTGGCACATTTGGTGAGGCTTCGGGAGGTCACCAGAATTGTTNCTGTTCACACGGGCTGCTAGTTCTTCACAGCTATCTCGTGTCATCCGAGCAGAAGCAACTACCTACCAATAAGAGGTTGCTTCAGACCCAAATGGCATCGTCAGGAATTTTTCCTCGGTTATTCCAGCATGTGCGTTGTTACGTTGAAGGATGAATTCCAAAAGAGCACTACATTAATCCTCTAGGTCACTTTGTCACCATGAAGTTCATTTTCTATCTGTTCAGTATTTTCTGTTGTCTGTGTTCCTGCGCACAAAGCCAAAACATCTCTGGGAGGCCCGATGCAGTGAGAATTGGAGCTCAGTTCGCAAGGAATTCAACAATTGGGAGAGTTGCCGCAGTTGCCGTCCTTGCTGCTTGTCAATGACATCAACAATGATTCGAATATCCTTCCGGGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_193#0 TTGTTTGTTTAAGCTGTATGTGCCACACTTTCTTATTCCTGAAAAGAAGATTGGTTTCCC 60 consensus_193#1 ------------------------------------------------------------ consensus_193#0 TCTTCAACTTCATACTCCGATGTTCTTGCCCCTCTATAGCTCATTAAAAAGTTAGTAGTT 120 consensus_193#1 ------------------------------------------------------------ consensus_193#0 GAGTTCATCTCAGCTGCTCTTCTTCTGGTTCTTTTATCTTTTGTTTTTTTGGTGGTTCCT 180 consensus_193#1 ---------------------------------------------------GTGGCACAT 9 **** * * consensus_193#0 TGCAAGTGCTTTTTCTCGAGGAATGTCCCTTTTGGTTCTGTTGCCTGTTGGACCTCAGTT 240 consensus_193#1 TTGGTGAGGCTTC------GGGAGGTCACC---AGAATTGTTNC-TGTTC-ACACGGGCT 58 * * * ** ** * *** * * **** * **** ** * * consensus_193#0 CTTATTTATTTAATGATTTGTGCTCCTCTGTAACCTGGTGTTCTCGCTTTCTAATCTGTA 300 consensus_193#1 GCTAGTTCTTCACAGCTATCTCGTGTCATCCGAGCAGAAGCAACTACCTACCAAT--AAG 116 ** ** ** * * * * * * * * * * * * * * *** consensus_193#0 ACGCTATACCTGTGCTTAACAGGCATCGTCAGGAATTTTTCCTCGGTTATTCCAGCATGT 360 consensus_193#1 AGGTTGCTTCAG-ACCCAAATGGCATCGTCAGGAATTTTTCCTCGGTTATTCCAGCATGT 175 * * * * * * ** *************************************** consensus_193#0 GCGTTGTTACGTTGAAGGATGAATTCCAAAAGAGCACTACATTAATCCTCTAGGTCACTT 420 consensus_193#1 GCGTTGTTACGTTGAAGGATGAATTCCAAAAGAGCACTACATTAATCCTCTAGGTCACTT 235 ************************************************************ consensus_193#0 TGTCACCATGAAGTTCATTTTCTATCTGTTCAGTATTTTCTGTTGTCTGTGTTCCTGCGC 480 consensus_193#1 TGTCACCATGAAGTTCATTTTCTATCTGTTCAGTATTTTCTGTTGTCTGTGTTCCTGCGC 295 ************************************************************ consensus_193#0 ACAAAGCCAAAACATCTCTGGGAGGCCCGATGCAGTGAGAATTGGAGCTCAGTTCGCAAG 540 consensus_193#1 ACAAAGCCAAAACATCTCTGGGAGGCCCGATGCAGTGAGAATTGGAGCTCAGTTCGCAAG 355 ************************************************************ consensus_193#0 GAATTCAACAATTGGGAGAGTTGCCGCAGTTGCCGTCCTTGCTGCT-GTCAATGACATCA 599 consensus_193#1 GAATTCAACAATTGGGAGAGTTGCCGCAGTTGCCGTCCTTGCTGCTTGTCAATGACATCA 415 ********************************************** ************* consensus_193#0 ACAATGATTCGAATATCCTTCCGGGAACAAAGCTGGATCTTCATATGCATGATTCCAGTT 659 consensus_193#1 ACAATGATTCGAATATCCTTCCGGGA-CA------------------------------- 443 ************************** ** consensus_193#0 GCAATCGCTTTCTTGGCATTGTGCAAGCCTTGCAATTCATGGAGAAAGATACAGTGGCAA 719 consensus_193#1 ------------------------------------------------------------ consensus_193#0 TCATCGGCCCATTGTCTTCTACCACCGCCCATGTCCTTTCTCATCTTGCAAATGAACTCC 779 consensus_193#1 ------------------------------------------------------------ consensus_193#0 ACGTACCTCTGATGTCCTTTTCTGCAACTGATCCAACTCTTTCGTCACTTGAGTATCCGT 839 consensus_193#1 ------------------------------------------------------------ consensus_193#0 TCTTTGTGCGGACTACCGTCAGTGATCAATTTCAAATGACTGCTGTTGCTGACTTAGTTG 899 consensus_193#1 ------------------------------------------------------------ consensus_193#0 AGTATTATGGGTGGAAGCAAGTGACAACCATATTTGTGGATAATGATTATGGAAGAAATG 959 consensus_193#1 ------------------------------------------------------------ consensus_193#0 CAATATCCTCTTTAGGCGATGAACTTTCCAAGAGGCGATCTAAGATCCTGTATAAAGCTC 1019 consensus_193#1 ------------------------------------------------------------ consensus_193#0 CAT 1022 consensus_193#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||