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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1931#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1714 fasta sequence
[ACTTAGCCGCCCTAGAGACAAGCTAGAGAACAGCAAAGACAGCAATGTCCATGGCGTCTCTCCAAGCTCCTGAGTTCCTTGCGTCCTGCCTCCTCCTCGCCACCATTCTCTTCTTCAAGCAGCTTCTCGCGCCGTCGTCCAAGCAGCGCGCCGCCTCGCCGTCGCTACCACGCCCGAGAGGCCTCCCTCTCATCGGCAACCTCCACCAGGTCGGCGCGCTCCCGCACCGCTCCCTCGCCGCGCTCGCCGCCAGGCATGCGGCGCCGCTCATGCTGCTCCGCCTCGGCTCCGTGCCGACGCTCGTCGTCTCCACCGCCGACGCGGCGCGGGCGCTGTTCCGGGACAACGACCGCGCGCTGTCGGGGCGCCCGGCGCTGTACGCGGCCACCAGGCTCTCCTACGGCCAGAAGAGCATCTCCTTCGCGCCCGACGGCGCGTACTGGCGCGCCGCGCGCCGCGCGTGCATGTCGGAGCTCCTCGGCCCGCCGCGGGTGCGCGGGCTCCGCGACGCCCGGGAGCGCGAGGCCGCCGCGCTCGTCGCGGCCGTGGCGGCCGCCGGCGCCTCCCCCGTCAACCTGAGCGACATGGTCGCCGCCACCAGCAGCAGGATCGTGCGGCGCGTCGCCTTCGGCGACGGCGACGGCGACGAGAGCATGGACGTCAAGGCTGTCCTCAACGAGACCCAGGCTCTTCTTGGTGGTCTCTGGGTCGCCGACTACGTGCCGTGGCTCCGGTGGGTGGACACCCTCAGCGGCAAGAGGTGGCGGCTGGAGCGGCGGTTCCGCCAGCTCGACGCGCTCTACGAGCGCGTCATCGACGACCACCTCAACAAGCGCAAGCATGCATCCGACGAAGAAGACGACTTGGTCGACGTGCTCCTCCGCCTCCACGGCGATCCGGCTCACCGGAGCACGTTCGGCAGCCGCAGCCACATCAAAGGCATTCTCACGGACATGTTCATCGCCGGGAGCGACACGTCGGCGGTGACGGTGCAGTGGGCGATGACGGAGCTCGTCAGGAACCCGGACGTGCTCGCCAAGGCGCAGCACGAGGTGCGCCGCGTCGTCGCCGCCGGCGACAAGGTGCGGGAAGCCGACCTCCCGGAGCTCCACTACCTTCGCCTGGTCATCAAGGAGACACTGCGGCTCCACCCGGCGGCGCCGCTGCTGGTTCCACGGGAGACGACGGAGCCGTTCCGCACGGCGCACGGCGTCGAGATACCGGCCAGGACGCGCGTCGTCGTCAACGCGATGGCGATACACACGGACCCCGGCGTCTGGGGCCCGGACGCGGAGCGGTTCGTGCCCGAGCGCCACCGCGACGACGCCGACGGCTGCGCGCAGCAGCACGACGGGTTCGCGCTGGTGCCGTTCGGGATCGGGCGGAGGAGATGCCCCGGCGTGCGCTTCGCGGCGGCGGCGGTGGAGCTGCTGCTGGCCAACCTCCTCTTCTGCTTCGACTGGCGCGCGCCGCCGGGGCGCGAGGTGGACGTGGAGGAGGAGAACGGGCTGGCGGTGCACAAGAAGAACCCTCTCGTGCTCATCGCCACCAAGAGCAAGAGGAACACAGGTGGCCATTGACGACGCAGACATGTAACCTTGCTGGTAGGGTAATTTTATCAGAAGGTACATACAACATGTGTAAAAGGTACATACAACATGTGCAAAAGGTATTATTATCTTGAGATACTTTCTCAAGGGTTATAAAATTTTCT]
[+] EMBL AK121175 [ACTTAGCCGCCCTAGAGACAAGCTAGAGAACAGCAAAGACAGCAATGTCCATGGCGTCTCTCCAAGCTCCTGAGTTCCTTGCGTCCTGCCTCCTCCTCGCCACCATTCTCTTCTTCAAGCAGCTTCTCGCGCCGTCGTCCAAGCAGCGCGCCGCCTCGCCGTCGCTACCACGCCCGAGAGGCCTCCCTCTCATCGGCAACCTCCACCAGGTCGGCGCGCTCCCGCACCGCTCCCTCGCCGCGCTCGCCGCCAGGCATGCGGCGCCGCTCATGCTGCTCCGCCTCGGCTCCGTGCCGACGCTCGTCGTCTCCACCGCCGACGCGGCGCGGGCGCTGTTCCGGGACAACGACCGCGCGCTGTCGGGGCGCCCGGCGCTGTACGCGGCCACCAGGCTCTCCTACGGCCAGAAGAGCATCTCCTTCGCGCCCGACGGCGCGTACTGGCGCGCCGCGCGCCGCGCGTGCATGTCGGAGCTCCTCGGCCCGCCGCGGGTGCGCGGGCTCCGCGACGCCCGGGAGCGCGAGGCCGCCGCGCTCGTCGCGGCCGTGGCGGCCGCCGGCGCCTCCCCCGTCAACCTGAGCGACATGGTCGCCGCCACCAGCAGCAGGATCGTGCGGCGCGTCGCCTTCGGCGACGGCGACGGCGACGAGAGCATGGACGTCAAGGCTGTCCTCAACGAGACCCAGGCTCTTCTTGGTGGTCTCTGGGTCGCCGACTACGTGCCGTGGCTCCGGTGGGTGGACACCCTCAGCGGCAAGAGGTGGCGGCTGGAGCGGCGGTTCCGCCAGCTCGACGCGCTCTACGAGCGCGTCATCGACGACCACCTCAACAAGCGCAAGCATGCATCCGACGAAGAAGACGACTTGGTCGACGTGCTCCTCCGCCTCCACGGCGATCCGGCTCACCGGAGCACGTTCGGCAGCCGCAGCCACATCAAAGGCATTCTCACGGACATGTTCATCGCCGGGAGCGACACGTCGGCGGTGACGGTGCAGTGGGCGATGACGGAGCTCGTCAGGAACCCGGACGTGCTCGCCAAGGCGCAGCACGAGGTGCGCCGCGTCGTCGCCGCCGGCGACAAGGTGCGGGAAGCCGACCTCCCGGAGCTCCACTACCTTCGCCTGGTCATCAAGGAGACACTGCGGCTCCACCCGGCGGCGCCGCTGCTGGTTCCACGGGAGACGACGGAGCCGTTCCGCACGGCGCACGGCGTCGAGATACCGGCCAGGACGCGCGTCGTCGTCAACGCGATGGCGATACACACGGACCCCGGCGTCTGGGGCCCGGACGCGGAGCGGTTCGTGCCCGAGCGCCACCGCGACGACGCCGACGGCTGCGCGCAGCAGCACGACGGGTTCGCGCTGGTGCCGTTCGGGATCGGGCGGAGGAGATGCCCCGGCGTGCGCTTCGCGGCGGCGGCGGTGGAGCTGCTGCTGGCCAACCTCCTCTTCTGCTTCGACTGGCGCGCGCCGCCGGGGCGCGAGGTGGACGTGGAGGAGGAGAACGGGCTGGCGGTGCACAAGAAGAACCCTCTCGTGCTCATCGCCACCAAGAGCAAGAGGAACACAGGTGGCCATTGACGACGCAGACATGTAACCTTGCTGGTAGGGTAATTTTATCAGAAGGTACATACAACATGTGTAAAAGGTACATACAACATGTGCAAAAGGTATTATTATCTTGAGATACTTTCTCAAGGGTTATAAAATTTTCT]
consensusID : consensus_1931#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence
[TTCTTATCTCACTAAATTTCGGTCGGTCGAAAGCTCTGTGTGCGTGTAAAATTTGAGCATCAGAATTTAAACTTTAGTGGATAGACTGGAGTCATGTACTCACGACTCAACCACCACACCGCTGGTGCTTCCCCGTTTTCCTGGACATTTTGATCGATCGAAACCGAAATGTGTGGTCTTGCAGGACATGTTCATCGCCGGGAGCGACACGTCGGCGGTGACGGTGCAGTGGGCGATGACGGAGCTCGTCAGGAACCTGGACGTGCTCGCCAAGGCGCAGCACGAGGTGCGCCGCGTCGTCGCCGCCGGCGACAAGGTGCGGGAAGCCGACCTCCCGGAGCTCCACTACCTTCGCCTGGTCATCAAGGAGACACTGCGGCTCCACCCGGCGGCGCCGCTGCTGGTTCCACGGGAGACGACGGAGCCGTTCCGCACGGCGCACGGCGTCGAGATACCGGCCAGGACGCGCGTCGTCGTCAACGCGATGGCGATACACACGGACCCCGGCGTCTGGGGCCCGGACGCGGAGCGGTTCGTGCCCGAGCGCCACCGCGACGACGCCGACGGCTGCGCGCAGCAGCACGACGGGTTCGCGCTGGTGCCGTTCGGGATCGGGCGGAGGAGATGCCCCGGCGTGCACTTCGCGGCGGCGGCGGTGGAGCTGCTGCTGGCCAACCTCCTCTTCTGCTTCGACTGGCGCGCGCCGCCGGGGCGCGAG]
[-] EMBL AK063679 [TTCTTATCTCACTAAATTTCGGTCGGTCGAAAGCTCTGTGTGCGTGTAAAATTTGAGCATCAGAATTTAAACTTTAGTGGATAGACTGGAGTCATGTACTCACGACTCAACCACCACACCGCTGGTGCTTCCCCGTTTTCCTGGACATTTTGATCGATCGAAACCGAAATGTGTGGTCTTGCAGGACATGTTCATCGCCGGGAGCGACACGTCGGCGGTGACGGTGCAGTGGGCGATGACGGAGCTCGTCAGGAACCTGGACGTGCTCGCCAAGGCGCAGCACGAGGTGCGCCGCGTCGTCGCCGCCGGCGACAAGGTGCGGGAAGCCGACCTCCCGGAGCTCCACTACCTTCGCCTGGTCATCAAGGAGACACTGCGGCTCCACCCGGCGGCGCCGCTGCTGGTTCCACGGGAGACGACGGAGCCGTTCCGCACGGCGCACGGCGTCGAGATACCGGCCAGGACGCGCGTCGTCGTCAACGCGATGGCGATACACACGGACCCCGGCGTCTGGGGCCCGGACGCGGAGCGGTTCGTGCCCGAGCGCCACCGCGACGACGCCGACGGCTGCGCGCAGCAGCACGACGGGTTCGCGCTGGTGCCGTTCGGGATCGGGCGGAGGAGATGCCCCGGCGTGCACTTCGCGGCGGCGGCGGTGGAGCTGCTGCTGGCCAACCTCCTCTTCTGCTTCGACTGGCGCGCGCCGCCGGGGCGCGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1931#0 ACTTAGCCGCCCTAGAGACAAGCTAGAGAACAGCAAAGACAGCAATGTCCATGGCGTCTC 60
consensus_1931#1 ------------------------------------------------------------
consensus_1931#0 TCCAAGCTCCTGAGTTCCTTGCGTCCTGCCTCCTCCTCGCCACCATTCTCTTCTTCAAGC 120
consensus_1931#1 ------------------------------------------------------------
consensus_1931#0 AGCTTCTCGCGCCGTCGTCCAAGCAGCGCGCCGCCTCGCCGTCGCTACCACGCCCGAGAG 180
consensus_1931#1 ------------------------------------------------------------
consensus_1931#0 GCCTCCCTCTCATCGGCAACCTCCACCAGGTCGGCGCGCTCCCGCACCGCTCCCTCGCCG 240
consensus_1931#1 ------------------------------------------------------------
consensus_1931#0 CGCTCGCCGCCAGGCATGCGGCGCCGCTCATGCTGCTCCGCCTCGGCTCCGTGCCGACGC 300
consensus_1931#1 ------------------------------------------------------------
consensus_1931#0 TCGTCGTCTCCACCGCCGACGCGGCGCGGGCGCTGTTCCGGGACAACGACCGCGCGCTGT 360
consensus_1931#1 ------------------------------------------------------------
consensus_1931#0 CGGGGCGCCCGGCGCTGTACGCGGCCACCAGGCTCTCCTACGGCCAGAAGAGCATCTCCT 420
consensus_1931#1 ------------------------------------------------------------
consensus_1931#0 TCGCGCCCGACGGCGCGTACTGGCGCGCCGCGCGCCGCGCGTGCATGTCGGAGCTCCTCG 480
consensus_1931#1 ------------------------------------------------------------
consensus_1931#0 GCCCGCCGCGGGTGCGCGGGCTCCGCGACGCCCGGGAGCGCGAGGCCGCCGCGCTCGTCG 540
consensus_1931#1 ------------------------------------------------------------
consensus_1931#0 CGGCCGTGGCGGCCGCCGGCGCCTCCCCCGTCAACCTGAGCGACATGGTCGCCGCCACCA 600
consensus_1931#1 ------------------------------------------------------------
consensus_1931#0 GCAGCAGGATCGTGCGGCGCGTCGCCTTCGGCGACGGCGACGGCGACGAGAGCATGGACG 660
consensus_1931#1 ------------------------------------------------------------
consensus_1931#0 TCAAGGCTGTCCTCAACGAGACCCAGGCTCTTCTTGGTGGTCTCTGGGTCGCCGACTACG 720
consensus_1931#1 ------------------------------------------------------------
consensus_1931#0 TGCCGTGGCTCCGGTGGGTGGACACCCTCAGCGGCAAGAGGTGGCGGCTGGAGCGGCGGT 780
consensus_1931#1 -----------------------------------------TTCTTATCTCACTAA--AT 17
* * *
consensus_1931#0 TCCGCCAGCTCGACGCGCTCTACGAGCGCGTCATCGACGACCACCTCAACAAGCGCAAGC 840
consensus_1931#1 TTCGGTCGGTCGA-AAGCTCTGTGTGCGTGTAAAATTTGAGCATCAGAATTTAAACTTTA 76
* ** * **** ***** * *** ** * ** ** * ** *
consensus_1931#0 ATGCATCCGACGAAGAAGACGACTTGGTCGACGTGCTCCTC-CGCCTCCACGGCGATCCG 899
consensus_1931#1 GTGGATAGACTGGAGTCATGTACTCA--CGACTCAACCACCACACCGCTGGTGCTTCCCC 134
** ** * ** *** **** * * * ** * ** **
consensus_1931#0 GCTCACCGGAGCACGTTCGGCAGCCGCAGCCACATCAAAGGCATTCTCACGGACATGTTC 959
consensus_1931#1 GTTTTCCTGGACATTTTGATCGATCGAAACCGAAATGTGTGGTCTTGCA-GGACATGTTC 193
* * ** * ** ** * ** * ** * * * ** **********
consensus_1931#0 ATCGCCGGGAGCGACACGTCGGCGGTGACGGTGCAGTGGGCGATGACGGAGCTCGTCAGG 1019
consensus_1931#1 ATCGCCGGGAGCGACACGTCGGCGGTGACGGTGCAGTGGGCGATGACGGAGCTCGTCAGG 253
************************************************************
consensus_1931#0 AACCCGGACGTGCTCGCCAAGGCGCAGCACGAGGTGCGCCGCGTCGTCGCCGCCGGCGAC 1079
consensus_1931#1 AACCTGGACGTGCTCGCCAAGGCGCAGCACGAGGTGCGCCGCGTCGTCGCCGCCGGCGAC 313
**** *******************************************************
consensus_1931#0 AAGGTGCGGGAAGCCGACCTCCCGGAGCTCCACTACCTTCGCCTGGTCATCAAGGAGACA 1139
consensus_1931#1 AAGGTGCGGGAAGCCGACCTCCCGGAGCTCCACTACCTTCGCCTGGTCATCAAGGAGACA 373
************************************************************
consensus_1931#0 CTGCGGCTCCACCCGGCGGCGCCGCTGCTGGTTCCACGGGAGACGACGGAGCCGTTCCGC 1199
consensus_1931#1 CTGCGGCTCCACCCGGCGGCGCCGCTGCTGGTTCCACGGGAGACGACGGAGCCGTTCCGC 433
************************************************************
consensus_1931#0 ACGGCGCACGGCGTCGAGATACCGGCCAGGACGCGCGTCGTCGTCAACGCGATGGCGATA 1259
consensus_1931#1 ACGGCGCACGGCGTCGAGATACCGGCCAGGACGCGCGTCGTCGTCAACGCGATGGCGATA 493
************************************************************
consensus_1931#0 CACACGGACCCCGGCGTCTGGGGCCCGGACGCGGAGCGGTTCGTGCCCGAGCGCCACCGC 1319
consensus_1931#1 CACACGGACCCCGGCGTCTGGGGCCCGGACGCGGAGCGGTTCGTGCCCGAGCGCCACCGC 553
************************************************************
consensus_1931#0 GACGACGCCGACGGCTGCGCGCAGCAGCACGACGGGTTCGCGCTGGTGCCGTTCGGGATC 1379
consensus_1931#1 GACGACGCCGACGGCTGCGCGCAGCAGCACGACGGGTTCGCGCTGGTGCCGTTCGGGATC 613
************************************************************
consensus_1931#0 GGGCGGAGGAGATGCCCCGGCGTGCGCTTCGCGGCGGCGGCGGTGGAGCTGCTGCTGGCC 1439
consensus_1931#1 GGGCGGAGGAGATGCCCCGGCGTGCACTTCGCGGCGGCGGCGGTGGAGCTGCTGCTGGCC 673
************************* **********************************
consensus_1931#0 AACCTCCTCTTCTGCTTCGACTGGCGCGCGCCGCCGGGGCGCGAGGTGGACGTGGAGGAG 1499
consensus_1931#1 AACCTCCTCTTCTGCTTCGACTGGCGCGCGCCGCCGGGGCGCGAG--------------- 718
*********************************************
consensus_1931#0 GAGAACGGGCTGGCGGTGCACAAGAAGAACCCTCTCGTGCTCATCGCCACCAAGAGCAAG 1559
consensus_1931#1 ------------------------------------------------------------
consensus_1931#0 AGGAACACAGGTGGCCATTGACGACGCAGACATGTAACCTTGCTGGTAGGGTAATTTTAT 1619
consensus_1931#1 ------------------------------------------------------------
consensus_1931#0 CAGAAGGTACATACAACATGTGTAAAAGGTACATACAACATGTGCAAAAGGTATTATTAT 1679
consensus_1931#1 ------------------------------------------------------------
consensus_1931#0 CTTGAGATACTTTCTCAAGGGTTATAAAATTTTCT 1714
consensus_1931#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||