These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1939#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [GCTCTCAGGCTCTCAGCTCACGCAGCCGCAGCGTTGTTGCTGCGATCTGCGGCGAGACAATGGCGGGGCGGCCACGGAGAGGGAGAGGCGGGTCAGGCGGCGGAGAAGCCCAGTGCTGGGGGCTTCCTCCACATAGACGGGTGCAGCGGGCGGCGAGCCGGCGAGGCCTCATCTGGCGCGCGGCATCGACCATCGAGGACTCCGAGAGTAGCAGTGGTTATTTACCCCACGCTCGGATGGATATGTTTTCATCTGAATGGGACAGGAATGAAGTACACTCTCGAGGCATTTCTCCTTGATCACGGAAGGAGCACAACACTATCACCAAAGAGAACCCTGTCTGTGACTACTTTCCTCAAGTCGTCGGGTAGGTGGCTTGGGAACATTGCCTGGACAACTGATGATTAACGTAAGACTGAGATTTCTAGTCAAATGCAATCAAAGAAATTAAAGAGTAAAGTAAAGCCTCGTGAAACATTACCAGTATCAAATAAACGTCCTTAAAGACTTGAAAAGGAAAAGGCTTTGATTTTGGAGTAGTATAGATGTGAAGGCCTCTACTTTTTTTTCTCATCTTTCAGTGACTTTGAATTTAGCAATAAAAGAAG] [+] EMBL AK121210 [GCTCTCAGGCTCTCAGCTCACGCAGCCGCAGCGTTGTTGCTGCGATCTGCGGCGAGACAATGGCGGGGCGGCCACGGAGAGGGAGAGGCGGGTCAGGCGGCGGAGAAGCCCAGTGCTGGGGGCTTCCTCCACATAGACGGGTGCAGCGGGCGGCGAGCCGGCGAGGCCTCATCTGGCGCGCGGCATCGACCATCGAGGACTCCGAGAGTAGCAGTGGTTATTTACCCCACGCTCGGATGGATATGTTTTCATCTGAATGGGACAGGAATGAAGTACACTCTCGAGGCATTTCTCCTTGATCACGGAAGGAGCACAACACTATCACCAAAGAGAACCCTGTCTGTGACTACTTTCCTCAAGTCGTCGGGTAGGTGGCTTGGGAACATTGCCTGGACAACTGATGATTAACGTAAGACTGAGATTTCTAGTCAAATGCAATCAAAGAAATTAAAGAGTAAAGTAAAGCCTCGTGAAACATTACCAGTATCAAATAAACGTCCTTAAAGACTTGAAAAGGAAAAGGCTTTGATTTTGGAGTAGTATAGATGTGAAGGCCTCTACTTTTTTTTCTCATCTTTCAGTGACTTTGAATTTAGCAATAAAAGAAG] consensusID : consensus_1939#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [TCAGGCTCTCAGCTCACGCAGCCGCAGCGTTGTTGCTGCGATCTGCGGCGAGACAATGGCGGGGCGGCCACGGAGAGGGAGAGGCGGGTCAGGCGGCGGAGAAGCCCAGTGCTGGGGGCTTCCTCCACATAGACGGGTGCAGCGGGCGGCGAGCCGGCGAGGCCTCATCTGGCGCGCGGCATCGACCATCGAGGACTCCGAGAGTAGCAGACGACTTGCTTTGTCTAGATACCAACTGCAGCAGTAAATCGAGCTCTAACCGTGGTTGTAGGAATGTTCCTACTTGGAATAACTGAAGAAAAATAACAAGAAACGGTAATGCCCAAACGAATGCTACTTTCTGCAAATGTCACTAACCAAACTGGAGAAATGGGGAAAACATAAGGTGGTATTCATGTTACACTTTGTTGTTTTGATAAGGGAATTAATAATAATGTGTCCCGGCCAAGAGATGCACAAAGAAATCTTGTTATTACTTTTTGGAGTTGTGGGAATAAATTCTTGTA] [+] EMBL AK111007 [TCAGGCTCTCAGCTCACGCAGCCGCAGCGTTGTTGCTGCGATCTGCGGCGAGACAATGGCGGGGCGGCCACGGAGAGGGAGAGGCGGGTCAGGCGGCGGAGAAGCCCAGTGCTGGGGGCTTCCTCCACATAGACGGGTGCAGCGGGCGGCGAGCCGGCGAGGCCTCATCTGGCGCGCGGCATCGACCATCGAGGACTCCGAGAGTAGCAGACGACTTGCTTTGTCTAGATACCAACTGCAGCAGTAAATCGAGCTCTAACCGTGGTTGTAGGAATGTTCCTACTTGGAATAACTGAAGAAAAATAACAAGAAACGGTAATGCCCAAACGAATGCTACTTTCTGCAAATGTCACTAACCAAACTGGAGAAATGGGGAAAACATAAGGTGGTATTCATGTTACACTTTGTTGTTTTGATAAGGGAATTAATAATAATGTGTCCCGGCCAAGAGATGCACAAAGAAATCTTGTTATTACTTTTTGGAGTTGTGGGAATAAATTCTTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1939#0 GCTCTCAGGCTCTCAGCTCACGCAGCCGCAGCGTTGTTGCTGCGATCTGCGGCGAGACAA 60 consensus_1939#1 ----TCAGGCTCTCAGCTCACGCAGCCGCAGCGTTGTTGCTGCGATCTGCGGCGAGACAA 56 ******************************************************** consensus_1939#0 TGGCGGGGCGGCCACGGAGAGGGAGAGGCGGGTCAGGCGGCGGAGAAGCCCAGTGCTGGG 120 consensus_1939#1 TGGCGGGGCGGCCACGGAGAGGGAGAGGCGGGTCAGGCGGCGGAGAAGCCCAGTGCTGGG 116 ************************************************************ consensus_1939#0 GGCTTCCTCCACATAGACGGGTGCAGCGGGCGGCGAGCCGGCGAGGCCTCATCTGGCGCG 180 consensus_1939#1 GGCTTCCTCCACATAGACGGGTGCAGCGGGCGGCGAGCCGGCGAGGCCTCATCTGGCGCG 176 ************************************************************ consensus_1939#0 CGGCATCGACCATCGAGGACTCCGAGAGTAGCAGTGGTTATTTACCCCACGCTCGGATGG 240 consensus_1939#1 CGGCATCGACCATCGAGGACTCCGAGAGTAGCA--GACGACTTGCTTT--GTCTAGATAC 232 ********************************* * * ** * * *** consensus_1939#0 ATATGTTTTCATCTGAATGGGACAGGAATGAAGTACACTCTCGAGGCATTTCTCCTTG-- 298 consensus_1939#1 CAACTGCAGCAGTAAATCGAGCTCTAACCGTGGT----TGTAGGAATGTTCCTACTTGGA 288 * ** * * * * * ** * * * ** ** **** consensus_1939#0 ATCACGGAAGGAGCACAACACTATCACCAAAGAGAACCCTGTCTGTGACTACTTTCCTCA 358 consensus_1939#1 ATAACTGAAGAAAAATAACA--AGAAACGGTAATG-CCCAAACGAATGCTACTTTCTGCA 345 ** ** **** * * **** * * * * *** * ******** ** consensus_1939#0 AGTCGTCGGGTAGGTGGCTTGGGAACATTGCCTGGACAACTGATG--ATTAACGTAAGAC 416 consensus_1939#1 AAT-GTCAC-TAACCAAACTGGAGAAATGGGGAAAACATAAGGTGGTATTCATGTTACAC 403 * * *** ** *** * ** * *** * ** *** * ** * ** consensus_1939#0 TGAGATTTCTAGTCAAATGCAATCAAAGAAATTAAAGAGTAAAGTAAAGCCTCGTGAAAC 476 consensus_1939#1 TTTGTTGTTTTGATAAG-GGAATTAATAATAATGTGTCCCGGCCAAGAGATGCACAAAGA 462 * * * * * * ** * *** ** * * * * ** * ** consensus_1939#0 ATTACCAGTATCAAATAAACGTCCTTAAAGACTTGAAAAGGAAAAGGCTTTGATTTTGGA 536 consensus_1939#1 AATCTTGTTATTA---------CTTTTTGGAGTTGTGGGAATAAATTCTTGTA------- 506 * * *** * * ** ** *** *** *** * consensus_1939#0 GTAGTATAGATGTGAAGGCCTCTACTTTTTTTTCTCATCTTTCAGTGACTTTGAATTTAG 596 consensus_1939#1 ------------------------------------------------------------ consensus_1939#0 CAATAAAAGAAG 608 consensus_1939#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||