These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1941#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [ACTGTCGTTCTAAATAAATCTTCGTCATCATCGTCTAACGAGAAAAAAGTCTACGATAGTGAATGGCAAGAAGAAAGAAATTTACAGAAAACTCGTCGTTTTTTACATTCAACATCGATTCTCTATCCGATTTTATTAACTTTTCTTGTTCTTGTTGGTACTGTTGTTCTTGTTCTATTAGTAACACGTCGAAATTCATGTCGACATATTCATGAAGAAAAGTTAGCTGGCCATTCGATTCAATCATTAGTTCATGATCATACACCGGCATGGATATCTTGCAAGAAAACGAATGTTTCATCGACATGTGCATGTCCAGCATCATTTGTTCATTCGAAAGTCAATCCATCGCATTGTATTCCAAGTCAAACACGTTGCCTTCATTCATGCAAACACAATGAACATTGTGCATGCCACAATTTGATCGATGCTCAACATTGTCATCGAACATCAAGTCATTGGATTAAACATGAATTANAGATCGAATCAATTCAATCGATTGAACAGTCCGATGAACAAATTCCTTCACAACAACAACNACNACNACNACNACCATGGTCAATTCAATTGAATCAACATATTGAANATCGTGTTGTTAATGATAAACGTAG] [+] EMBL CA756089 [ACTGTCGTTCTAAATAAATCTTCGTCATCATCGTCTAACGAGAAAAAAGTCTACGATAGTGAATGGCAAGAAGAAAGAAATTTACAGAAAACTCGTCGTTTTTTACATTCAACATCGATTCTCTATCCGATTTTATTAACTTTTCTTGTTCTTGTTGGTACTGTTGTTCTTGTTCTATTAGTAACACGTCGAAATTCATGTCGACATATTCATGAAGAAAAGTTAGCTGGCCATTCGATTCAATCATTAGTTCATGATCATACACCGGCATGGATATCTTGCAAGAAAACGAATGTTTCATCGACATGTGCATGTCCAGCATCATTTGTTCATTCGAAAGTCAATCCATCGCATTGTATTCCAAGTCAAACACGTTGCCTTCATTCATGCAAACACAATGAACATTGTGCATGCCACAATTTGATCGATGCTCAACATTGTCATCGAACATCAAGTCATTGGATTAAACATGAATTANAGATCGAATCAATTCAATCGATTGAACAGTCCGATGAACAAATTCCTTCACAACAACAACNACNACNACNACNACCATGGTCAATTCAATTGAATCAACATATTGAANATCGTGTTGTTAATGATAAACGTAG] consensusID : consensus_1941#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [AATAAATCTTCGTCATCATCGTCTAACGAGAAAAAAGTCTACGATAATGAATGGCAAGACGAAAGAAATTTACAGAAAACTCGTCGTTTTTTACATTCAACATCGATTCTCTATCCGATTTTATTAACTTTTCTTGTTCTTGTTGGTACTGTTGTTCTTGTTCTATTAGTAACACGTCGAAATTCATGTCGACATATTCATGAAGAAAAGTTAGCTGGCCATTCGATTCAATCATTAGTTCATGATCATACACCGGCATGGATATCTTGCAAGAAAACGAATGTTTCATCGACATGTGCATGTCCAGCATCATTTGTTCATTCGAAAGTTAATCCATCGCATTGTATTCCAAGTCAAACACGTTGCCTTCATTCATGCAAACACAATGAACATTGTGCATGCCATAATTTGATCGATGCTCAACATTGTCATCGAACATCAAGTCATTGGATTANACATGAATTANAGATCGAATCAATTCAATCGATTGAACAGTCCGATGAACAAATTTCTTCACAACAACAGCAACCATGGTCAATTNCATTGAATCAACATATTGAANATCGTGTTGTTAATGATAAACGTAGAAGAACAGTCTTTTTCAGTG] [+] EMBL CA756050 [AATAAATCTTCGTCATCATCGTCTAACGAGAAAAAAGTCTACGATAATGAATGGCAAGACGAAAGAAATTTACAGAAAACTCGTCGTTTTTTACATTCAACATCGATTCTCTATCCGATTTTATTAACTTTTCTTGTTCTTGTTGGTACTGTTGTTCTTGTTCTATTAGTAACACGTCGAAATTCATGTCGACATATTCATGAAGAAAAGTTAGCTGGCCATTCGATTCAATCATTAGTTCATGATCATACACCGGCATGGATATCTTGCAAGAAAACGAATGTTTCATCGACATGTGCATGTCCAGCATCATTTGTTCATTCGAAAGTTAATCCATCGCATTGTATTCCAAGTCAAACACGTTGCCTTCATTCATGCAAACACAATGAACATTGTGCATGCCATAATTTGATCGATGCTCAACATTGTCATCGAACATCAAGTCATTGGATTANACATGAATTANAGATCGAATCAATTCAATCGATTGAACAGTCCGATGAACAAATTTCTTCACAACAACAGCAACCATGGTCAATTNCATTGAATCAACATATTGAANATCGTGTTGTTAATGATAAACGTAGAAGAACAGTCTTTTTCAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1941#0 ACTGTCGTTCTAAATAAATCTTCGTCATCATCGTCTAACGAGAAAAAAGTCTACGATAGT 60 consensus_1941#1 ------------AATAAATCTTCGTCATCATCGTCTAACGAGAAAAAAGTCTACGATAAT 48 ********************************************** * consensus_1941#0 GAATGGCAAGAAGAAAGAAATTTACAGAAAACTCGTCGTTTTTTACATTCAACATCGATT 120 consensus_1941#1 GAATGGCAAGACGAAAGAAATTTACAGAAAACTCGTCGTTTTTTACATTCAACATCGATT 108 *********** ************************************************ consensus_1941#0 CTCTATCCGATTTTATTAACTTTTCTTGTTCTTGTTGGTACTGTTGTTCTTGTTCTATTA 180 consensus_1941#1 CTCTATCCGATTTTATTAACTTTTCTTGTTCTTGTTGGTACTGTTGTTCTTGTTCTATTA 168 ************************************************************ consensus_1941#0 GTAACACGTCGAAATTCATGTCGACATATTCATGAAGAAAAGTTAGCTGGCCATTCGATT 240 consensus_1941#1 GTAACACGTCGAAATTCATGTCGACATATTCATGAAGAAAAGTTAGCTGGCCATTCGATT 228 ************************************************************ consensus_1941#0 CAATCATTAGTTCATGATCATACACCGGCATGGATATCTTGCAAGAAAACGAATGTTTCA 300 consensus_1941#1 CAATCATTAGTTCATGATCATACACCGGCATGGATATCTTGCAAGAAAACGAATGTTTCA 288 ************************************************************ consensus_1941#0 TCGACATGTGCATGTCCAGCATCATTTGTTCATTCGAAAGTCAATCCATCGCATTGTATT 360 consensus_1941#1 TCGACATGTGCATGTCCAGCATCATTTGTTCATTCGAAAGTTAATCCATCGCATTGTATT 348 ***************************************** ****************** consensus_1941#0 CCAAGTCAAACACGTTGCCTTCATTCATGCAAACACAATGAACATTGTGCATGCCACAAT 420 consensus_1941#1 CCAAGTCAAACACGTTGCCTTCATTCATGCAAACACAATGAACATTGTGCATGCCATAAT 408 ******************************************************** *** consensus_1941#0 TTGATCGATGCTCAACATTGTCATCGAACATCAAGTCATTGGATTAAACATGAATTANAG 480 consensus_1941#1 TTGATCGATGCTCAACATTGTCATCGAACATCAAGTCATTGGATTANACATGAATTANAG 468 ********************************************** ************* consensus_1941#0 ATCGAATCAATTCAATCGATTGAACAGTCCGATGAACAAATTCCTTCACAACAACAACNA 540 consensus_1941#1 ATCGAATCAATTCAATCGATTGAACAGTCCGATGAACAAATTTCTTCACAACAACAGCAA 528 ****************************************** ************* * * consensus_1941#0 CNACNACNACNACCATGGTCAATTCAATTGAATCAACATATTGAANATCGTGTTGTTAAT 600 consensus_1941#1 C------------CATGGTCAATTNCATTGAATCAACATATTGAANATCGTGTTGTTAAT 576 * *********** ********************************** consensus_1941#0 GATAAACGTAG-------------------- 611 consensus_1941#1 GATAAACGTAGAAGAACAGTCTTTTTCAGTG 607 *********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||