cluster # 1942

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Oryza sativa
cluster # 1942 cluster # 1942 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1942#0 length = 570 sequences # 1

consensus_1942#1 length = 550 sequences # 1

consensusID : consensus_1942#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 570
fasta sequence

                              [CTTTTTTTTTTGTCTATTAAAGTGAACCCCGAGTTGGCGATCAAATTGGTTTCTGTTATATGAAATTTTGTTTTTTTCTCTATTTCTGTATTTAGCAAAGTGTGGTGTACGTGTTCGCCATTTACTTGGTTTTCCTGGTGCTATGTCTATTTGTGACAGGAGTGAGGCGATGGATCATGCGCATGCGCTCCAGAAATATGGCAGTAAATTTGATTTTTTTTATGAGCAAAGTCCTCCTCCCATGAATAACGTCGTAAAGAGTTCATTCTATTTCGTTGAGAGGCAAGATTAATTATGTTCTGCTGGCTGCGCAGTACCTAGCTGTGATGCACCCGGCACGGTAGAAAAGCTTGTGCCGATATGCCAGGAAGAACATATAGATTCCAAGCAAATGAATGAATATGTACCCAAATAATAAAATCTTGCAATTGTTCCAACGTATGCAGCAGGGTCTTTTTTATTTTGTCATTCAGGGTGTACGGGAGTATGATCAGTGGAGTATTTAATTTGTAACAGCTGCTTGTTGCATGATCAGTATAATAAAATCGAGTTGATTTCCTTGCTAAAAAA]

[+] EMBL C99014               [CTTTTTTTTTTGTCTATTAAAGTGAACCCCGAGTTGGCGATCAAATTGGTTTCTGTTATATGAAATTTTGTTTTTTTCTCTATTTCTGTATTTAGCAAAGTGTGGTGTACGTGTTCGCCATTTACTTGGTTTTCCTGGTGCTATGTCTATTTGTGACAGGAGTGAGGCGATGGATCATGCGCATGCGCTCCAGAAATATGGCAGTAAATTTGATTTTTTTTATGAGCAAAGTCCTCCTCCCATGAATAACGTCGTAAAGAGTTCATTCTATTTCGTTGAGAGGCAAGATTAATTATGTTCTGCTGGCTGCGCAGTACCTAGCTGTGATGCACCCGGCACGGTAGAAAAGCTTGTGCCGATATGCCAGGAAGAACATATAGATTCCAAGCAAATGAATGAATATGTACCCAAATAATAAAATCTTGCAATTGTTCCAACGTATGCAGCAGGGTCTTTTTTATTTTGTCATTCAGGGTGTACGGGAGTATGATCAGTGGAGTATTTAATTTGTAACAGCTGCTTGTTGCATGATCAGTATAATAAAATCGAGTTGATTTCCTTGCTAAAAAA]




>consensus_1942#0
CTTTTTTTTTTGTCTATTAAAGTGAACCCCGAGTTGGCGATCAAATTGGTTTCTGTTATA
TGAAATTTTGTTTTTTTCTCTATTTCTGTATTTAGCAAAGTGTGGTGTACGTGTTCGCCA
TTTACTTGGTTTTCCTGGTGCTATGTCTATTTGTGACAGGAGTGAGGCGATGGATCATGC
GCATGCGCTCCAGAAATATGGCAGTAAATTTGATTTTTTTTATGAGCAAAGTCCTCCTCC
CATGAATAACGTCGTAAAGAGTTCATTCTATTTCGTTGAGAGGCAAGATTAATTATGTTC
TGCTGGCTGCGCAGTACCTAGCTGTGATGCACCCGGCACGGTAGAAAAGCTTGTGCCGAT
ATGCCAGGAAGAACATATAGATTCCAAGCAAATGAATGAATATGTACCCAAATAATAAAA
TCTTGCAATTGTTCCAACGTATGCAGCAGGGTCTTTTTTATTTTGTCATTCAGGGTGTAC
GGGAGTATGATCAGTGGAGTATTTAATTTGTAACAGCTGCTTGTTGCATGATCAGTATAA
TAAAATCGAGTTGATTTCCTTGCTAAAAAA

consensusID : consensus_1942#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [TTGCACGGCGGCAGAACATTGCTGGTGAGCAGAGCTGCCCTGCAGAAGCCGGTCGGAGATGGCAGAAGATCGTCAGCGGAGACGCTGACGGGCAGAAGATCGATCGTCAGTGGGAATCGGCGGCGGAAGCGGGCAGAAGATCGTTATTGGGCGACATTGGAGGAGACGACCGAAGATCGTCAGCGGGGAGTGCTCGATCTTGAGCAGAAACCGATGGTGGGAGACGACAGAAGATTGATCAGTAGCTGACGACGACGGCACGACGCGATATGGCAGAAGGAGTGAGGCGATGGATCATGCGCATGCGCTCCAGAAATATGGCAGTAAATTTGATTTTTTTTATGAGCAAAGTCCTCCTCCCATGAATAACGTCGTAAAGAGTTCATTCTATTTCGTTGAGAGGCAAGATTAATTATGTTCTGCTGGCTGCGCAGTACCTAGCTGTGATGCACCCGGCACGGTAGAAAAGCTTGTGCCGATATGCCAGGAAGAACATATAGATTCCAAGCAAATGAATGAATATGTACCCAAATAATAAAATCTTGCAATT]

[+] EMBL AK121216             [TTGCACGGCGGCAGAACATTGCTGGTGAGCAGAGCTGCCCTGCAGAAGCCGGTCGGAGATGGCAGAAGATCGTCAGCGGAGACGCTGACGGGCAGAAGATCGATCGTCAGTGGGAATCGGCGGCGGAAGCGGGCAGAAGATCGTTATTGGGCGACATTGGAGGAGACGACCGAAGATCGTCAGCGGGGAGTGCTCGATCTTGAGCAGAAACCGATGGTGGGAGACGACAGAAGATTGATCAGTAGCTGACGACGACGGCACGACGCGATATGGCAGAAGGAGTGAGGCGATGGATCATGCGCATGCGCTCCAGAAATATGGCAGTAAATTTGATTTTTTTTATGAGCAAAGTCCTCCTCCCATGAATAACGTCGTAAAGAGTTCATTCTATTTCGTTGAGAGGCAAGATTAATTATGTTCTGCTGGCTGCGCAGTACCTAGCTGTGATGCACCCGGCACGGTAGAAAAGCTTGTGCCGATATGCCAGGAAGAACATATAGATTCCAAGCAAATGAATGAATATGTACCCAAATAATAAAATCTTGCAATT]




>consensus_1942#1
TTGCACGGCGGCAGAACATTGCTGGTGAGCAGAGCTGCCCTGCAGAAGCCGGTCGGAGAT
GGCAGAAGATCGTCAGCGGAGACGCTGACGGGCAGAAGATCGATCGTCAGTGGGAATCGG
CGGCGGAAGCGGGCAGAAGATCGTTATTGGGCGACATTGGAGGAGACGACCGAAGATCGT
CAGCGGGGAGTGCTCGATCTTGAGCAGAAACCGATGGTGGGAGACGACAGAAGATTGATC
AGTAGCTGACGACGACGGCACGACGCGATATGGCAGAAGGAGTGAGGCGATGGATCATGC
GCATGCGCTCCAGAAATATGGCAGTAAATTTGATTTTTTTTATGAGCAAAGTCCTCCTCC
CATGAATAACGTCGTAAAGAGTTCATTCTATTTCGTTGAGAGGCAAGATTAATTATGTTC
TGCTGGCTGCGCAGTACCTAGCTGTGATGCACCCGGCACGGTAGAAAAGCTTGTGCCGAT
ATGCCAGGAAGAACATATAGATTCCAAGCAAATGAATGAATATGTACCCAAATAATAAAA
TCTTGCAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1942#0      ------------------------------------------------------------
consensus_1942#1      TTGCACGGCGGCAGAACATTGCTGGTGAGCAGAGCTGCCCTGCAGAAGCCGGTCGGAGAT 60
                                                                                  

consensus_1942#0      ----------------------------------------CTTTTTTTTTTGTCTATTAA 20
consensus_1942#1      GGCAGAAGATCGTCAGCGGAGACGCTGACGGGCAGAAGATCGATCGTCAGTGGGAATCGG 120
                                                              *  *  *   **   **   

consensus_1942#0      AGTGAACCCCGAGTTGGCGATCAA-ATTGGTTTCTGTTATATGAAATTTTGTTTTTTTCT 79
consensus_1942#1      CGGCGGAAGCGGGCAGAAGATCGTTATTGGGCGACATTGGAGGAGACGACCGAAGATCGT 180
                       *       ** *  *  ****   *****      **  * ** *          *  *

consensus_1942#0      CTAT--------TTCTGTATTTAGCAAAGTGTGGTG-----------TACGTGTTCGCCA 120
consensus_1942#1      CAGCGGGGAGTGCTCGATCTTGAGCAGAAACCGATGGTGGGAGACGACAGAAGATTGATC 240
                      *            **  * ** **** *    * **            *   * * *   

consensus_1942#0      TTTACTTGGTTTTCCTGGTGCTATGTCTATTTGTGACAGGAGTGAGGCGATGGATCATGC 180
consensus_1942#1      AGTAGCTGACGACGACGGCACGACGCGATATGGCAGAAGGAGTGAGGCGATGGATCATGC 300
                        **  **        **  * * *     * *    ***********************

consensus_1942#0      GCATGCGCTCCAGAAATATGGCAGTAAATTTGATTTTTTTTATGAGCAAAGTCCTCCTCC 240
consensus_1942#1      GCATGCGCTCCAGAAATATGGCAGTAAATTTGATTTTTTTTATGAGCAAAGTCCTCCTCC 360
                      ************************************************************

consensus_1942#0      CATGAATAACGTCGTAAAGAGTTCATTCTATTTCGTTGAGAGGCAAGATTAATTATGTTC 300
consensus_1942#1      CATGAATAACGTCGTAAAGAGTTCATTCTATTTCGTTGAGAGGCAAGATTAATTATGTTC 420
                      ************************************************************

consensus_1942#0      TGCTGGCTGCGCAGTACCTAGCTGTGATGCACCCGGCACGGTAGAAAAGCTTGTGCCGAT 360
consensus_1942#1      TGCTGGCTGCGCAGTACCTAGCTGTGATGCACCCGGCACGGTAGAAAAGCTTGTGCCGAT 480
                      ************************************************************

consensus_1942#0      ATGCCAGGAAGAACATATAGATTCCAAGCAAATGAATGAATATGTACCCAAATAATAAAA 420
consensus_1942#1      ATGCCAGGAAGAACATATAGATTCCAAGCAAATGAATGAATATGTACCCAAATAATAAAA 540
                      ************************************************************

consensus_1942#0      TCTTGCAATTGTTCCAACGTATGCAGCAGGGTCTTTTTTATTTTGTCATTCAGGGTGTAC 480
consensus_1942#1      TCTTGCAATT-------------------------------------------------- 550
                      **********                                                  

consensus_1942#0      GGGAGTATGATCAGTGGAGTATTTAATTTGTAACAGCTGCTTGTTGCATGATCAGTATAA 540
consensus_1942#1      ------------------------------------------------------------
                                                                                  

consensus_1942#0      TAAAATCGAGTTGATTTCCTTGCTAAAAAA 570
consensus_1942#1      ------------------------------