cluster # 1976

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Oryza sativa
cluster # 1976 cluster # 1976 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1976#0 length = 406 sequences # 1

consensus_1976#1 length = 383 sequences # 1

consensusID : consensus_1976#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGAAAAGCAACAAACCCCATGTTCTCACATTTTTGAAAAATTACCCTCAATTTGCTGCCCTCCGATTTAAACAAATAACCCCCAAGCGAACCCAAAGGGGCCCAAATTGACAGTTTTTTTTTGCAACCAAAAACAATGGACCCCGGAGGGGCCCCCTTCCCTCCCAAATTGAAAAACTGAACCCCCTACTTTTTTTTCCCAAAACCGGGGGAAATTTTGGAAACCCCCCGGCCAATTATAAACAAACTGGGGCCCCCCCCCCCAAGGGGAATGGCCACAAATTTGAACCCATTTTAACCCCCCTTCAGGGAGGGGGGCTGGGGTAAAATCTAAAAAAA]

[+] EMBL CF330386             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGAAAAGCAACAAACCCCATGTTCTCACATTTTTGAAAAATTACCCTCAATTTGCTGCCCTCCGATTTAAACAAATAACCCCCAAGCGAACCCAAAGGGGCCCAAATTGACAGTTTTTTTTTGCAACCAAAAACAATGGACCCCGGAGGGGCCCCCTTCCCTCCCAAATTGAAAAACTGAACCCCCTACTTTTTTTTCCCAAAACCGGGGGAAATTTTGGAAACCCCCCGGCCAATTATAAACAAACTGGGGCCCCCCCCCCCAAGGGGAATGGCCACAAATTTGAACCCATTTTAACCCCCCTTCAGGGAGGGGGGCTGGGGTAAAATCTAAAAAAA]




>consensus_1976#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTGGGGGAAAAGCAACAAACCCCATGTTCTCACATTTTTGAAAAATTACCCTCAATT
TGCTGCCCTCCGATTTAAACAAATAACCCCCAAGCGAACCCAAAGGGGCCCAAATTGACA
GTTTTTTTTTGCAACCAAAAACAATGGACCCCGGAGGGGCCCCCTTCCCTCCCAAATTGA
AAAACTGAACCCCCTACTTTTTTTTCCCAAAACCGGGGGAAATTTTGGAAACCCCCCGGC
CAATTATAAACAAACTGGGGCCCCCCCCCCCAAGGGGAATGGCCACAAATTTGAACCCAT
TTTAACCCCCCTTCAGGGAGGGGGGCTGGGGTAAAATCTAAAAAAA

consensusID : consensus_1976#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 383
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGAAACATCAATTGGCGGGCCTCCGATTTAAACAAATAACAACAAAGCGAACCCAAATGGGCTCAAATTGACAGTTTTTTTTTGCAACCAAAAACAATGGACCCTGGATGGGCCCCCTTCCATGCCAAGTTGAAATACTGAACCCCCTACTTTTTTTTCCCAATACCGGGGGACATGTTGTAAACCCCACGGCCAATCATGAACAAACTGGGGCCCCCCCCCCCAAGGGGAATGGCAACAAATGTGATCACATTGTAACCCCCCTTCAGGGAGGGGGGCTTGGGTAAATTCTGAAAATATTGGGGGGGCTTAAACAGCTTTTCACGGGGCACAA]

[+] EMBL CF313276             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGAAACATCAATTGGCGGGCCTCCGATTTAAACAAATAACAACAAAGCGAACCCAAATGGGCTCAAATTGACAGTTTTTTTTTGCAACCAAAAACAATGGACCCTGGATGGGCCCCCTTCCATGCCAAGTTGAAATACTGAACCCCCTACTTTTTTTTCCCAATACCGGGGGACATGTTGTAAACCCCACGGCCAATCATGAACAAACTGGGGCCCCCCCCCCCAAGGGGAATGGCAACAAATGTGATCACATTGTAACCCCCCTTCAGGGAGGGGGGCTTGGGTAAATTCTGAAAATATTGGGGGGGCTTAAACAGCTTTTCACGGGGCACAA]




>consensus_1976#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGAAACATCAA
TTGGCGGGCCTCCGATTTAAACAAATAACAACAAAGCGAACCCAAATGGGCTCAAATTGA
CAGTTTTTTTTTGCAACCAAAAACAATGGACCCTGGATGGGCCCCCTTCCATGCCAAGTT
GAAATACTGAACCCCCTACTTTTTTTTCCCAATACCGGGGGACATGTTGTAAACCCCACG
GCCAATCATGAACAAACTGGGGCCCCCCCCCCCAAGGGGAATGGCAACAAATGTGATCAC
ATTGTAACCCCCCTTCAGGGAGGGGGGCTTGGGTAAATTCTGAAAATATTGGGGGGGCTT
AAACAGCTTTTCACGGGGCACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1976#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_1976#1      ----------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 38
                                            ************* ************************

consensus_1976#0      TTTTTGGGGGAAAAGCAACAAACCCCATGTTCTCACATTTTTGAAAAATTACCCTCAATT 120
consensus_1976#1      TTTTT--------------------------------TTTTTAAGAAA----CATCAATT 62
                      *****                                ***** * ***    * ******

consensus_1976#0      TGCTGCCCTCCGATTTAAACAAATAACCCCCAAGCGAACCCAAAGGGGCCCAAATTGACA 180
consensus_1976#1      GGCGGGCCTCCGATTTAAACAAATAACAACAAAGCGAACCCAAATGGGCTCAAATTGACA 122
                       ** * *********************  * ************* **** **********

consensus_1976#0      GTTTTTTTTTGCAACCAAAAACAATGGACCCCGGAGGGGCCCCCTTCCCTCCCAAATTGA 240
consensus_1976#1      GTTTTTTTTTGCAACCAAAAACAATGGACCCTGGATGGGCCCCCTTCCATGCCAAGTTGA 182
                      ******************************* *** ************ * **** ****

consensus_1976#0      AAAACTGAACCCCCTACTTTTTTTTCCCAAAACCGGGGGAAATTTTGGAAACCCCCCGGC 300
consensus_1976#1      AATACTGAACCCCCTACTTTTTTTTCCCAATACCGGGGGACATGTTGTAAACCCCACGGC 242
                      ** *************************** ********* ** *** ******* ****

consensus_1976#0      CAATTATAAACAAACTGGGGCCCCCCCCCCCAAGGGGAATGGCCACAAATTTGAACCCAT 360
consensus_1976#1      CAATCATGAACAAACTGGGGCCCCCCCCCCCAAGGGGAATGGCAACAAATGTGATCACAT 302
                      **** ** *********************************** ****** *** * ***

consensus_1976#0      TTTAACCCCCCTTCAGGGAGGGGGGCTGGGGTAAAATCTAAAAAAA-------------- 406
consensus_1976#1      TGTAACCCCCCTTCAGGGAGGGGGGCTTGGGTAAATTCTGAAAATATTGGGGGGGCTTAA 362
                      * ************************* ******* *** **** *              

consensus_1976#0      ---------------------
consensus_1976#1      ACAGCTTTTCACGGGGCACAA 383