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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1980#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 812 fasta sequence
[ATCCGAGAACAGTCCGAAGACTGCTGATTTTTTCAATTGAAACACATACAAATTTGAACTTTTTTTTTCACCTCATCACAAGTAACAAATTAAATAAATTCGAATTAAATTTGAACGGATTACATCGGACTAGTTGGGAATTCGATCTTGCACTGCCTCCTGCTGCTCCCGCCCTTCCCACCGGCCCACCCCCTCAGCCTGCGGAGCAATCTGGGCCGTCCGATGCTCCTGCACCCGCCGGCGACGAACCCCATCATGCACGACGGCTCCGCCGCGCCGCGCATCTCCGACGACGAGCTCGATGACGCCGACGCCGCCTTGCAGAGCTCCACCTCGTTGCTCGGCGCCACCGCGACCACCACCTTCTCCCCCTTGTGCCGCGGCTGCGCCGGTGTCTCGTCGCCGATGATCGCCGCCGGCGTGCCGACCTCGCCGCCGTCGAGGACGAGGAGGTCGTGCTGCAGCCACGCCGTGATCCAGCCGAGGTAGATCATCTCCTCCATGTCGGCCGCCCACCGGTCCCGGAGCGCCTCCAGCCCGTCAAGAACGTCCCTGCCGCTCGACCCCAGCTTCCTCATGCTCCTCTCCACAATCACCTCCACATTCTCATTGTTTGTTCCTTTCTCCTTCTGCAGCTGCAAAGTGAGCTGCTTCATCTCCTCCATGAACTGCTCAAAGCCCTGGCACCTTGTGGCCATTTCTGCCTCCCTGGCATCAAGAGCCAGGACTCTTTCATCAATGGCGTCCAGGTCTTGCTTGTTCTTCTTCCAGATCTTCTTGGACTTGCTCTGCATCGCATCGAACCTAGCTCG]
[+] EMBL CB618683 [ATCCGAGAACAGTCCGAAGACTGCTGATTTTTTCAATTGAAACACATACAAATTTGAACTTTTTTTTTCACCTCATCACAAGTAACAAATTAAATAAATTCGAATTAAATTTGAACGGATTACATCGGACTAGTTGGGAATTCGATCTTGCACTGCCTCCTGCTGCTCCCGCCCTTCCCACCGGCCCACCCCCTCAGCCTGCGGAGCAATCTGGGCCGTCCGATGCTCCTGCACCCGCCGGCGACGAACCCCATCATGCACGACGGCTCCGCCGCGCCGCGCATCTCCGACGACGAGCTCGATGACGCCGACGCCGCCTTGCAGAGCTCCACCTCGTTGCTCGGCGCCACCGCGACCACCACCTTCTCCCCCTTGTGCCGCGGCTGCGCCGGTGTCTCGTCGCCGATGATCGCCGCCGGCGTGCCGACCTCGCCGCCGTCGAGGACGAGGAGGTCGTGCTGCAGCCACGCCGTGATCCAGCCGAGGTAGATCATCTCCTCCATGTCGGCCGCCCACCGGTCCCGGAGCGCCTCCAGCCCGTCAAGAACGTCCCTGCCGCTCGACCCCAGCTTCCTCATGCTCCTCTCCACAATCACCTCCACATTCTCATTGTTTGTTCCTTTCTCCTTCTGCAGCTGCAAAGTGAGCTGCTTCATCTCCTCCATGAACTGCTCAAAGCCCTGGCACCTTGTGGCCATTTCTGCCTCCCTGGCATCAAGAGCCAGGACTCTTTCATCAATGGCGTCCAGGTCTTGCTTGTTCTTCTTCCAGATCTTCTTGGACTTGCTCTGCATCGCATCGAACCTAGCTCG]
consensusID : consensus_1980#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence
[TTTTTTTTTTGCTCACAAGCAAAGACAAATCTTTCCTTCTCAACACAACACAATTTACTCAAGTACGTACAACGTGTTCATCCGAGAACAGTCCGAAGACTGTGATTTTTCAATTGAAACACATACAAATTTGAACTTTTTTTTCACCTCATCACAAGTAACAAGGGTTAAATAAATTCGAATTAAATTTGAACGGATTACATCGGACTAGTTGGGAATTCGATCTTGCACTGCTCCTGGTGTCCCGGCCTTCCCACCGGCCACCCCTCAGCTGCGGAGCACATCTGGGCCGTCCGATGCTCCTGGACACCGGCGGGGACGAACCCCATCATGGACGACGGCTCCGCACGCGCGCGCATCTCCGACGAACGAGCTCGA]
[-] EMBL BI812652 [TTTTTTTTTTGCTCACAAGCAAAGACAAATCTTTCCTTCTCAACACAACACAATTTACTCAAGTACGTACAACGTGTTCATCCGAGAACAGTCCGAAGACTGTGATTTTTCAATTGAAACACATACAAATTTGAACTTTTTTTTCACCTCATCACAAGTAACAAGGGTTAAATAAATTCGAATTAAATTTGAACGGATTACATCGGACTAGTTGGGAATTCGATCTTGCACTGCTCCTGGTGTCCCGGCCTTCCCACCGGCCACCCCTCAGCTGCGGAGCACATCTGGGCCGTCCGATGCTCCTGGACACCGGCGGGGACGAACCCCATCATGGACGACGGCTCCGCACGCGCGCGCATCTCCGACGAACGAGCTCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1980#0 ------------------------------------------------------------
consensus_1980#1 TTTTTTTTTTGCTCACAAGCAAAGACAAATCTTTCCTTCTCAACACAACACAATTTACTC 60
consensus_1980#0 -------------------ATCCGAGAACAGTCCGAAGACTGCTGATTTTTTCAATTGAA 41
consensus_1980#1 AAGTACGTACAACGTGTTCATCCGAGAACAGTCCGAAGACTG-TGATTTTT-CAATTGAA 118
*********************** ******** ********
consensus_1980#0 ACACATACAAATTTGAACTTTTTTTTTCACCTCATCACAAGTAACAAA--TTAAATAAAT 99
consensus_1980#1 ACACATACAAATTTGAACTTTTTTTT-CACCTCATCACAAGTAACAAGGGTTAAATAAAT 177
************************** ******************** **********
consensus_1980#0 TCGAATTAAATTTGAACGGATTACATCGGACTAGTTGGGAATTCGATCTTGCACTGCCTC 159
consensus_1980#1 TCGAATTAAATTTGAACGGATTACATCGGACTAGTTGGGAATTCGATCTTGCACTGC-TC 236
********************************************************* **
consensus_1980#0 CTGCTGCTCCCGCCCTTCCCACCGGCCCACCCCCTCAGCCTGCGGAGCA-ATCTGGGCCG 218
consensus_1980#1 CTGGTG-TCCCGGCCTTCCCACCGGCC--ACCCCTCAGC-TGCGGAGCACATCTGGGCCG 292
*** ** ***** ************** ********* ********* **********
consensus_1980#0 TCCGATGCTCCTGCAC-CCGCCGGCGACGAACCCCATCATGCACGACGGCTCCGC-CGCG 276
consensus_1980#1 TCCGATGCTCCTGGACACCGGCGGGGACGAACCCCATCATGGACGACGGCTCCGCACGCG 352
************* ** *** *** **************** ************* ****
consensus_1980#0 CCGCGCATCTCCGACGA-CGAGCTCGATGACGCCGACGCCGCCTTGCAGAGCTCCACCTC 335
consensus_1980#1 C-GCGCATCTCCGACGAACGAGCTCGA--------------------------------- 378
* *************** *********
consensus_1980#0 GTTGCTCGGCGCCACCGCGACCACCACCTTCTCCCCCTTGTGCCGCGGCTGCGCCGGTGT 395
consensus_1980#1 ------------------------------------------------------------
consensus_1980#0 CTCGTCGCCGATGATCGCCGCCGGCGTGCCGACCTCGCCGCCGTCGAGGACGAGGAGGTC 455
consensus_1980#1 ------------------------------------------------------------
consensus_1980#0 GTGCTGCAGCCACGCCGTGATCCAGCCGAGGTAGATCATCTCCTCCATGTCGGCCGCCCA 515
consensus_1980#1 ------------------------------------------------------------
consensus_1980#0 CCGGTCCCGGAGCGCCTCCAGCCCGTCAAGAACGTCCCTGCCGCTCGACCCCAGCTTCCT 575
consensus_1980#1 ------------------------------------------------------------
consensus_1980#0 CATGCTCCTCTCCACAATCACCTCCACATTCTCATTGTTTGTTCCTTTCTCCTTCTGCAG 635
consensus_1980#1 ------------------------------------------------------------
consensus_1980#0 CTGCAAAGTGAGCTGCTTCATCTCCTCCATGAACTGCTCAAAGCCCTGGCACCTTGTGGC 695
consensus_1980#1 ------------------------------------------------------------
consensus_1980#0 CATTTCTGCCTCCCTGGCATCAAGAGCCAGGACTCTTTCATCAATGGCGTCCAGGTCTTG 755
consensus_1980#1 ------------------------------------------------------------
consensus_1980#0 CTTGTTCTTCTTCCAGATCTTCTTGGACTTGCTCTGCATCGCATCGAACCTAGCTCG 812
consensus_1980#1 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||