These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1985#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2419 fasta sequence [TCTTCTTCCGCCGTGGACTCATCGTCTCCAACGCCACACGACACGACGCGACGCGACGCGACGCGAGAAAAAGTCAAAAGCAGCAGCAGCGGCGGAGCAACCAAGCCTACCTCCACCAAAATCTTCTCCCCCCCTCTCCTCTCCTCTCCACCCGCCGGTGACCCGAGCCCCCCCACCGCCTCACGCCGCCGCCGCCGCCGCCGCGGGGAGTTCCATTCCACCGGGTCGCCTTCCGGCCGTCTCCTGCAGAGAGGTTCATGAGGGGCTCGAGGATGAATCCAGGTGACCGTAGAACGCGGAGCACGATGTCCATCGTAATTGTGATGAGTTTGTGCTGCTTCTTTTATATACTAGGAGCTTGGCAGAAAAGTGGGACCGGAAGGGGGGATAGTATTGCATTGAGGGTGACAAAAGAGACCGACTGTACAATCTTGCCAAACTTGCACTTTGAGACCCATCATAGCTTAGGTGGTGTTAATCCTTTGGTCATGACCGATAAAGTCTTTGAGCCATGCCATATTCGATACAGTGACTATACTCCTTGTCAGGATCAGAACCGAGCAATGAACTTTCCTAGAGAAAATATGAACTACCGAGAGAGGCATTGTCCTACAGAGACTAAGAAACTGCGCTGTCTAATCCCAGCACCCAAAGGCTATGTCACCCCTTTTCCTTGGCCCAAGAGCCGTGACTATGTTCCATATGCAAATGCACCATATAAGAATTTGACAGTTGAGAAGGCTGTTCAGAACTGGGTCCAGTTTGAGGGAGATGTGTTTAGATTTCCAGGAGGGGGGACAATGTTTCCCAATGGAGCAAATGCCTACATTGATGAGCTTGCATCCGTCATTCCATTTACTGATGGCACCATTAGGACTGCACTTGATACTGGATGCGGGGTTGCCAGCTGGGGTGCTTACCTAATGGACAGAAATGTATTAACCATGTCATTTGCACCTCGAGACTCACATGAAGCTCAGGTTCAATTTGCATTGGAGCGAGGTGTTCCTGCAGTAATTGGAGTGCTTGGAACTATAAAACTACCATACCCCTCTGGATCTTTTGATATGGCCCATTGCTCACGCTGCTTAATCTCCTGGAAGTCAAATGATGCGATGTACATGTTTGAAGTAGATCGGGTTCTGAGGCCTGGTGGCTATTGGATATTGTCTGGTCCTCCCATCAATTGGAAGACAAATCACCAAGCATGGAAAAGATCCAAGGAAGACTTAGAGGCAGAACAAAATGTAATCGAAAAAATTGCTGAAATGTTGTGCTGGGGTAAGATTCATGAGAAGGGAGATACTGTTATTTGGCGCAAAAAGGCAGATTCAAATGAATGTCATAATAAGGATGACCATCCTAGCAAGATGTGCAAAATTCAAGATGCAGATGATGTCTGGTATAAGAAAATGGAAGGTTGTATAACACCTTTCCCGGAAGAAGCACAGCTACGGAAATTCCCAGAGAGACTATTTGCTGCCCCTCCCAGAATTCTACAGGGTCGCACCCCAGGTGTTACAGAAGAAATTTTTGAGGAGGATAATAAGTTGTGGAAGAAGTATGTCAGTACTTACAAGAGGATAAACAAGCTGATAGGTTCTTTGAGGTATAGGAATATTATGGACATGAACGCAGGGCTTGGAAGTTTTGCGGCAATTATTGATTCTCCAATATCTTGGGTAATGAATGTTGTGCCCACAATATCTGAGAAGAACACTCTTGGTATCATTTACGAGCGAGGTCTTATTGGCATATACCATGATTGGTGTGAAGCCTTCTCTACATATCCTAGGACATACGACTTGATACATGCCAATGGTCTCTTCAGCTTATACCAGAATAAGTGCAACATGGAAGACATTCTTCTGGAGATGGATAGGATTTTACGTCCTGAGGGCGCAGTCATACTGCGGGACAATGTTGAGGTGCTGAACAAGGTTAGGAGGACAGTGATGGGGATGCGGTGGAAATCCAAGTTGCTTGATCATGAAGATGGGCCTCATATACCTGAGAAGATTTTGGTTTCAGTGAAAAAGTATTGGGTTGGCAATGAAGAAGAAAACAGTTCATAGATACCCTTTTTTTATGTTGTACCTGTTCATAGATCCGGTTCATACTTCATAGGTACAGGCCTCACCATTCCCAATCAAGATGACATACAGGTAGAGTATTTTTTATGTCCTGCATATTGGTTGTGCATATACAGAAGCAGGGCATTAAGGGCAAACGTTGGTGATTTGCCAACACATTTTGTAGGTAAAGAGGAAGATAGTTTGTGCTGAGATGAACGTACCCATTGTATTACAGATCCACACAGGAACATTTTCCGAGTGAACAAGTGTTGCCCCATGTATTTTGTTTGTGCTGCTTGTACAACATGGAACATTAGCAGTACATGTACAAGTAACAAGGAGAC] [+] EMBL AK072459 [TCTTCTTCCGCCGTGGACTCATCGTCTCCAACGCCACACGACACGACGCGACGCGACGCGACGCGAGAAAAAGTCAAAAGCAGCAGCAGCGGCGGAGCAACCAAGCCTACCTCCACCAAAATCTTCTCCCCCCCTCTCCTCTCCTCTCCACCCGCCGGTGACCCGAGCCCCCCCACCGCCTCACGCCGCCGCCGCCGCCGCCGCGGGGAGTTCCATTCCACCGGGTCGCCTTCCGGCCGTCTCCTGCAGAGAGGTTCATGAGGGGCTCGAGGATGAATCCAGGTGACCGTAGAACGCGGAGCACGATGTCCATCGTAATTGTGATGAGTTTGTGCTGCTTCTTTTATATACTAGGAGCTTGGCAGAAAAGTGGGACCGGAAGGGGGGATAGTATTGCATTGAGGGTGACAAAAGAGACCGACTGTACAATCTTGCCAAACTTGCACTTTGAGACCCATCATAGCTTAGGTGGTGTTAATCCTTTGGTCATGACCGATAAAGTCTTTGAGCCATGCCATATTCGATACAGTGACTATACTCCTTGTCAGGATCAGAACCGAGCAATGAACTTTCCTAGAGAAAATATGAACTACCGAGAGAGGCATTGTCCTACAGAGACTAAGAAACTGCGCTGTCTAATCCCAGCACCCAAAGGCTATGTCACCCCTTTTCCTTGGCCCAAGAGCCGTGACTATGTTCCATATGCAAATGCACCATATAAGAATTTGACAGTTGAGAAGGCTGTTCAGAACTGGGTCCAGTTTGAGGGAGATGTGTTTAGATTTCCAGGAGGGGGGACAATGTTTCCCAATGGAGCAAATGCCTACATTGATGAGCTTGCATCCGTCATTCCATTTACTGATGGCACCATTAGGACTGCACTTGATACTGGATGCGGGGTTGCCAGCTGGGGTGCTTACCTAATGGACAGAAATGTATTAACCATGTCATTTGCACCTCGAGACTCACATGAAGCTCAGGTTCAATTTGCATTGGAGCGAGGTGTTCCTGCAGTAATTGGAGTGCTTGGAACTATAAAACTACCATACCCCTCTGGATCTTTTGATATGGCCCATTGCTCACGCTGCTTAATCTCCTGGAAGTCAAATGATGCGATGTACATGTTTGAAGTAGATCGGGTTCTGAGGCCTGGTGGCTATTGGATATTGTCTGGTCCTCCCATCAATTGGAAGACAAATCACCAAGCATGGAAAAGATCCAAGGAAGACTTAGAGGCAGAACAAAATGTAATCGAAAAAATTGCTGAAATGTTGTGCTGGGGTAAGATTCATGAGAAGGGAGATACTGTTATTTGGCGCAAAAAGGCAGATTCAAATGAATGTCATAATAAGGATGACCATCCTAGCAAGATGTGCAAAATTCAAGATGCAGATGATGTCTGGTATAAGAAAATGGAAGGTTGTATAACACCTTTCCCGGAAGAAGCACAGCTACGGAAATTCCCAGAGAGACTATTTGCTGCCCCTCCCAGAATTCTACAGGGTCGCACCCCAGGTGTTACAGAAGAAATTTTTGAGGAGGATAATAAGTTGTGGAAGAAGTATGTCAGTACTTACAAGAGGATAAACAAGCTGATAGGTTCTTTGAGGTATAGGAATATTATGGACATGAACGCAGGGCTTGGAAGTTTTGCGGCAATTATTGATTCTCCAATATCTTGGGTAATGAATGTTGTGCCCACAATATCTGAGAAGAACACTCTTGGTATCATTTACGAGCGAGGTCTTATTGGCATATACCATGATTGGTGTGAAGCCTTCTCTACATATCCTAGGACATACGACTTGATACATGCCAATGGTCTCTTCAGCTTATACCAGAATAAGTGCAACATGGAAGACATTCTTCTGGAGATGGATAGGATTTTACGTCCTGAGGGCGCAGTCATACTGCGGGACAATGTTGAGGTGCTGAACAAGGTTAGGAGGACAGTGATGGGGATGCGGTGGAAATCCAAGTTGCTTGATCATGAAGATGGGCCTCATATACCTGAGAAGATTTTGGTTTCAGTGAAAAAGTATTGGGTTGGCAATGAAGAAGAAAACAGTTCATAGATACCCTTTTTTTATGTTGTACCTGTTCATAGATCCGGTTCATACTTCATAGGTACAGGCCTCACCATTCCCAATCAAGATGACATACAGGTAGAGTATTTTTTATGTCCTGCATATTGGTTGTGCATATACAGAAGCAGGGCATTAAGGGCAAACGTTGGTGATTTGCCAACACATTTTGTAGGTAAAGAGGAAGATAGTTTGTGCTGAGATGAACGTACCCATTGTATTACAGATCCACACAGGAACATTTTCCGAGTGAACAAGTGTTGCCCCATGTATTTTGTTTGTGCTGCTTGTACAACATGGAACATTAGCAGTACATGTACAAGTAACAAGGAGAC] consensusID : consensus_1985#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence [AGGCAACTTGTGATTTACCAACACATTTTGTAGGTAAAGAGGAAGATAGTTTGTGCTGGAGGATGGAACGTACCCACTTGTATTGACAGATCCACAACAGGGAACACTGTTTGCCGAGTGAACACAGTGTTGCCCCATGTATTTTTGTTTGTCCTGCTTGTACACACATGGAACATTACAAGTACATGTACATGTAACAAGGAGACAAGGAGTTGTACACAACCACATATCTACTATCACCTACCTAGGTTTCTCCTCACCTACAGCTGATAGGATGTTGTTTGGTCACAGGGGCGACGCTACAGCCTGGTCACACATATGATGGATTAGATATAGTGTACTTTAGTGAAGTCGGTCAAGCCTCCGGGATGGACCCGTAGAGGTAGCAACATTCTGAATTCTGCTCGACGGAGTTTATAACAGCACCTTTGCTCTTGCTGCTAAAAAAAAAA] [+] EMBL BI812592 [AGGCAACTTGTGATTTACCAACACATTTTGTAGGTAAAGAGGAAGATAGTTTGTGCTGGAGGATGGAACGTACCCACTTGTATTGACAGATCCACAACAGGGAACACTGTTTGCCGAGTGAACACAGTGTTGCCCCATGTATTTTTGTTTGTCCTGCTTGTACACACATGGAACATTACAAGTACATGTACATGTAACAAGGAGACAAGGAGTTGTACACAACCACATATCTACTATCACCTACCTAGGTTTCTCCTCACCTACAGCTGATAGGATGTTGTTTGGTCACAGGGGCGACGCTACAGCCTGGTCACACATATGATGGATTAGATATAGTGTACTTTAGTGAAGTCGGTCAAGCCTCCGGGATGGACCCGTAGAGGTAGCAACATTCTGAATTCTGCTCGACGGAGTTTATAACAGCACCTTTGCTCTTGCTGCTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1985#0 TCTTCTTCCGCCGTGGACTCATCGTCTCCAACGCCACACGACACGACGCGACGCGACGCG 60 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 ACGCGAGAAAAAGTCAAAAGCAGCAGCAGCGGCGGAGCAACCAAGCCTACCTCCACCAAA 120 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 ATCTTCTCCCCCCCTCTCCTCTCCTCTCCACCCGCCGGTGACCCGAGCCCCCCCACCGCC 180 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 TCACGCCGCCGCCGCCGCCGCCGCGGGGAGTTCCATTCCACCGGGTCGCCTTCCGGCCGT 240 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 CTCCTGCAGAGAGGTTCATGAGGGGCTCGAGGATGAATCCAGGTGACCGTAGAACGCGGA 300 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 GCACGATGTCCATCGTAATTGTGATGAGTTTGTGCTGCTTCTTTTATATACTAGGAGCTT 360 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 GGCAGAAAAGTGGGACCGGAAGGGGGGATAGTATTGCATTGAGGGTGACAAAAGAGACCG 420 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 ACTGTACAATCTTGCCAAACTTGCACTTTGAGACCCATCATAGCTTAGGTGGTGTTAATC 480 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 CTTTGGTCATGACCGATAAAGTCTTTGAGCCATGCCATATTCGATACAGTGACTATACTC 540 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 CTTGTCAGGATCAGAACCGAGCAATGAACTTTCCTAGAGAAAATATGAACTACCGAGAGA 600 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 GGCATTGTCCTACAGAGACTAAGAAACTGCGCTGTCTAATCCCAGCACCCAAAGGCTATG 660 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 TCACCCCTTTTCCTTGGCCCAAGAGCCGTGACTATGTTCCATATGCAAATGCACCATATA 720 consensus_1985#1 ----------------------------AGGCAACTTGTGATTTACCAACACATTTTGTA 32 * * * * ** * * ** ** * ** consensus_1985#0 AGAATTTGACAGTTGAGAAGGCTGTTCAGAACTGGGTCCAGTTTGAGGGAGATGTGTTTA 780 consensus_1985#1 GG---TAAAGAGGAAGATAGTTTGTGCTGGA--GGATGGAACGT-ACCCACTTGTATTGA 86 * * * ** ** *** * * * ** * * * * * *** ** * consensus_1985#0 GATTTCCAGGAGGGGGGACAATGTTTCCCAATGGAGCAAATGCCTACATTGATGAGCTTG 840 consensus_1985#1 CAGATCCACAACAGGGAACACTGTTTGCCGAGTGAACACAGTGTTGCCCC-ATGTATTTT 145 * **** * *** *** ***** ** * ** ** * * * *** ** consensus_1985#0 CATCCGTCATTCC-ATTTACTGATGGCACCATTAGGACTGCACTTGATACTGGATGCGGG 899 consensus_1985#1 TGTTTGTCCTGCTTGTACACACATGGAAC-ATTACAAGTACAT---GTACATGTAACAAG 201 * *** * * * ** **** ** **** * * ** *** * * * consensus_1985#0 GTTGCCAGCTGGGGTGCTTACCTAATGGACAGAAATGTATTAACCATGTCATTTGCACCT 959 consensus_1985#1 G-----AGACAAGGAGTT------GTACACAACCACATATCTACTA--TCACCTA---CC 245 * ** ** * * * *** * *** ** * *** * * consensus_1985#0 CGAGACTCACATGAAGCTCAGGTTCAATTTGCATTGGAGCGAGGTGTTCCTGCAGTAATT 1019 consensus_1985#1 TAGGTTTCTC------CTCACCTACAGCTGATA--------GGATGTTGTT-TGGTCACA 290 * ** * **** * ** * * * **** * ** * consensus_1985#0 GGAGTGCTTGGAACTATAAAACTACCATACCCCTCTGGATCTTTTGATATGGCCCATTGC 1079 consensus_1985#1 GGGGC----GACGCTACAGCCTGGTCACACATATGATGGATTAGATATAGTGTACTTTAG 346 ** * * *** * ** ** * * * *** * * ** consensus_1985#0 TCACGCTGCTTAATCTCCTGGAAGTCAAATGATGCGATGTACATGTTTGAAGTAGATCGG 1139 consensus_1985#1 TGAAGTCGGTCAAGCCTCCGGGA------TGGACCCGTAGA---GGTAGCAACATTCTGA 397 * * * * * ** * * ** * ** * * * * * * * * * consensus_1985#0 GTTCTGAGGCCTGGTGGCTATTGGATATTGTCTGGTCCTCCCATCAATTGGAAGACAAAT 1199 consensus_1985#1 ATTCTGCTCGACGGAGTTTATAACAGCACCTTTGCTCTTGCTGCTAAAAAAAAAA----- 452 ***** ** * *** * * ** ** * * ** ** * consensus_1985#0 CACCAAGCATGGAAAAGATCCAAGGAAGACTTAGAGGCAGAACAAAATGTAATCGAAAAA 1259 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 ATTGCTGAAATGTTGTGCTGGGGTAAGATTCATGAGAAGGGAGATACTGTTATTTGGCGC 1319 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 AAAAAGGCAGATTCAAATGAATGTCATAATAAGGATGACCATCCTAGCAAGATGTGCAAA 1379 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 ATTCAAGATGCAGATGATGTCTGGTATAAGAAAATGGAAGGTTGTATAACACCTTTCCCG 1439 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 GAAGAAGCACAGCTACGGAAATTCCCAGAGAGACTATTTGCTGCCCCTCCCAGAATTCTA 1499 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 CAGGGTCGCACCCCAGGTGTTACAGAAGAAATTTTTGAGGAGGATAATAAGTTGTGGAAG 1559 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 AAGTATGTCAGTACTTACAAGAGGATAAACAAGCTGATAGGTTCTTTGAGGTATAGGAAT 1619 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 ATTATGGACATGAACGCAGGGCTTGGAAGTTTTGCGGCAATTATTGATTCTCCAATATCT 1679 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 TGGGTAATGAATGTTGTGCCCACAATATCTGAGAAGAACACTCTTGGTATCATTTACGAG 1739 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 CGAGGTCTTATTGGCATATACCATGATTGGTGTGAAGCCTTCTCTACATATCCTAGGACA 1799 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 TACGACTTGATACATGCCAATGGTCTCTTCAGCTTATACCAGAATAAGTGCAACATGGAA 1859 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 GACATTCTTCTGGAGATGGATAGGATTTTACGTCCTGAGGGCGCAGTCATACTGCGGGAC 1919 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 AATGTTGAGGTGCTGAACAAGGTTAGGAGGACAGTGATGGGGATGCGGTGGAAATCCAAG 1979 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 TTGCTTGATCATGAAGATGGGCCTCATATACCTGAGAAGATTTTGGTTTCAGTGAAAAAG 2039 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 TATTGGGTTGGCAATGAAGAAGAAAACAGTTCATAGATACCCTTTTTTTATGTTGTACCT 2099 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 GTTCATAGATCCGGTTCATACTTCATAGGTACAGGCCTCACCATTCCCAATCAAGATGAC 2159 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 ATACAGGTAGAGTATTTTTTATGTCCTGCATATTGGTTGTGCATATACAGAAGCAGGGCA 2219 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 TTAAGGGCAAACGTTGGTGATTTGCCAACACATTTTGTAGGTAAAGAGGAAGATAGTTTG 2279 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 TGCTGAGATGAACGTACCCATTGTATTACAGATCCACACAGGAACATTTTCCGAGTGAAC 2339 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 AAGTGTTGCCCCATGTATTTTGTTTGTGCTGCTTGTACAACATGGAACATTAGCAGTACA 2399 consensus_1985#1 ------------------------------------------------------------ consensus_1985#0 TGTACAAGTAACAAGGAGAC 2419 consensus_1985#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||