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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 837 fasta sequence
[AAACACGACGATGGATCGATCGATGGCTCGGCGCCGGCGCGGCACCTCGTTCACGGCGAGCTGGCAGCTGGGACTCGCCGTGGTGGTCGCGGCGATCATGGCGTCCTCGGCGCAGCCGCAGCAGCAGCAGCAGCAGCCTCCGCAGCCGCCCGGTCAGCCGGCGAACGCGCCGAGCTGCCCGCCGGTGCAGGCCTCGCTGTCGCCGTGCGTCAGCTACTTCATCGGCAACTCGTCGACGCCGTCGGACGCGTGCTGCGAGCAGATGCGGGCCATGTTCCAGTCGCAGGCGCCCTGCCTCTGCGCCGCCGTGGCGTCGGCGCCGTCCCCGCTCGCGCCGGTGCTCGGCGGGGTGCAGTCGCTGCTCCCAACCGCCTGCAACCTGCCTCCCAATGCCTGCGCAGATGCGACAGGGTCGACGTCGGGCTCTGCTCCGGCCGGCGGCTCGTCGGCGACGCCGTCCACGGGGGCAACTGCCGCCGCGCCGGCCATGGAGCCCGCTGGCATGGACCCGGCGATGACTGCAGGTGGTGGATCCAAGTCAGTGCCGGGTATGCCGTACTCGGCGGCCGCCGGAGTCCATGGTGGTGGCGCCTCTGCTGCCGTCGCCGTCTTGATCTCCTCCATGCTTGCTTATGCTTGTATGATCTGAGATGCATGGCTGGTCTTATATACACACGTCCATTGTGATTTGTGATCGTGATGGTATATGCACATCAGCACATGTGCATCGTTATTAGCTTGCTTTTCAGGTTAGAAGACTTTGAGTTAATATGCCATTTGCGGATGTAATTAATTTGTAACAACATTGTTATGGAGTATTTCGACATAATAAGATAG]
[+] EMBL AK059831 [AAACACGACGATGGATCGATCGATGGCTCGGCGCCGGCGCGGCACCTCGTTCACGGCGAGCTGGCAGCTGGGACTCGCCGTGGTGGTCGCGGCGATCATGGCGTCCTCGGCGCAGCCGCAGCAGCAGCAGCAGCAGCCTCCGCAGCCGCCCGGTCAGCCGGCGAACGCGCCGAGCTGCCCGCCGGTGCAGGCCTCGCTGTCGCCGTGCGTCAGCTACTTCATCGGCAACTCGTCGACGCCGTCGGACGCGTGCTGCGAGCAGATGCGGGCCATGTTCCAGTCGCAGGCGCCCTGCCTCTGCGCCGCCGTGGCGTCGGCGCCGTCCCCGCTCGCGCCGGTGCTCGGCGGGGTGCAGTCGCTGCTCCCAACCGCCTGCAACCTGCCTCCCAATGCCTGCGCAGATGCGACAGGGTCGACGTCGGGCTCTGCTCCGGCCGGCGGCTCGTCGGCGACGCCGTCCACGGGGGCAACTGCCGCCGCGCCGGCCATGGAGCCCGCTGGCATGGACCCGGCGATGACTGCAGGTGGTGGATCCAAGTCAGTGCCGGGTATGCCGTACTCGGCGGCCGCCGGAGTCCATGGTGGTGGCGCCTCTGCTGCCGTCGCCGTCTTGATCTCCTCCATGCTTGCTTATGCTTGTATGATCTGAGATGCATGGCTGGTCTTATATACACACGTCCATTGTGATTTGTGATCGTGATGGTATATGCACATCAGCACATGTGCATCGTTATTAGCTTGCTTTTCAGGTTAGAAGACTTTGAGTTAATATGCCATTTGCGGATGTAATTAATTTGTAACAACATTGTTATGGAGTATTTCGACATAATAAGATAG]
consensusID : consensus_1991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 774 fasta sequence
[CCAAACACGACGATGGATCGATCGATGGCTCGGCGCCGGCGCGGCACCTCGTTCACGGCGAGCTGGCAGCTGGGACTCGCCGTGGTGGTCGCGGCGATCATGGCGTCCTCGGCGCAGCCGCAGCAGCAGCAGCAGCAGCCTCCGCAGCCGCCCGGTCAGCCGGCGAACGCGCCGAGCTGCCCGCCGGTGCAGGCCTCGCTGTCGCCGTGCGTCAGCTACTTCATCGGCAACTCGTCGACGCCGTCGGACGCGTGCTGCGAGCAGATGCGGGCCATGTTCCAGTCGCAGGCGCCCTGCCTCTGCGCCGCCGTGGCGTCGGCGCCGTCCCCGCTCGCGCCGGTGCTCGGCGGGGTGCAGTCGCTGCTCCCAACCGCCTGCAACCTGCCTCCCAATGCCTGCGCAGGTAAGCCGTTCGTTCGTGCCGTGCCAATACTTACTTGTGGACTGAACTCGCGTACGCATGGAGTGATCGCCGTGGCGGGCGTGGTGTTTGCAGATGCGACAGGGTCGACGTCGGGCTCTGCTCCGGCCGGCGGCTCGTCGGCGACGCCGTCCACGGGGGCAACTGCCGCCGCGCCGGCCATGGAGCCCGCTGGCATGGACCCGGCGATGACTGCAGGTGGTGGATCCAAGTCAGTGCCGGGTATGCCGTACTCGGCGGCCGCCGGAGTCCATGGTGGTGGCGCCTCTGCTGCCGTCGCCGTCTTGATCTCCTCCATGCTTGCTTATGCTTGTATGATCTGAGATGCATGGCTGGTCTTATATACACACGTC]
[+] EMBL AK058628 [CCAAACACGACGATGGATCGATCGATGGCTCGGCGCCGGCGCGGCACCTCGTTCACGGCGAGCTGGCAGCTGGGACTCGCCGTGGTGGTCGCGGCGATCATGGCGTCCTCGGCGCAGCCGCAGCAGCAGCAGCAGCAGCCTCCGCAGCCGCCCGGTCAGCCGGCGAACGCGCCGAGCTGCCCGCCGGTGCAGGCCTCGCTGTCGCCGTGCGTCAGCTACTTCATCGGCAACTCGTCGACGCCGTCGGACGCGTGCTGCGAGCAGATGCGGGCCATGTTCCAGTCGCAGGCGCCCTGCCTCTGCGCCGCCGTGGCGTCGGCGCCGTCCCCGCTCGCGCCGGTGCTCGGCGGGGTGCAGTCGCTGCTCCCAACCGCCTGCAACCTGCCTCCCAATGCCTGCGCAGGTAAGCCGTTCGTTCGTGCCGTGCCAATACTTACTTGTGGACTGAACTCGCGTACGCATGGAGTGATCGCCGTGGCGGGCGTGGTGTTTGCAGATGCGACAGGGTCGACGTCGGGCTCTGCTCCGGCCGGCGGCTCGTCGGCGACGCCGTCCACGGGGGCAACTGCCGCCGCGCCGGCCATGGAGCCCGCTGGCATGGACCCGGCGATGACTGCAGGTGGTGGATCCAAGTCAGTGCCGGGTATGCCGTACTCGGCGGCCGCCGGAGTCCATGGTGGTGGCGCCTCTGCTGCCGTCGCCGTCTTGATCTCCTCCATGCTTGCTTATGCTTGTATGATCTGAGATGCATGGCTGGTCTTATATACACACGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1991#0 --AAACACGACGATGGATCGATCGATGGCTCGGCGCCGGCGCGGCACCTCGTTCACGGCG 58
consensus_1991#1 CCAAACACGACGATGGATCGATCGATGGCTCGGCGCCGGCGCGGCACCTCGTTCACGGCG 60
**********************************************************
consensus_1991#0 AGCTGGCAGCTGGGACTCGCCGTGGTGGTCGCGGCGATCATGGCGTCCTCGGCGCAGCCG 118
consensus_1991#1 AGCTGGCAGCTGGGACTCGCCGTGGTGGTCGCGGCGATCATGGCGTCCTCGGCGCAGCCG 120
************************************************************
consensus_1991#0 CAGCAGCAGCAGCAGCAGCCTCCGCAGCCGCCCGGTCAGCCGGCGAACGCGCCGAGCTGC 178
consensus_1991#1 CAGCAGCAGCAGCAGCAGCCTCCGCAGCCGCCCGGTCAGCCGGCGAACGCGCCGAGCTGC 180
************************************************************
consensus_1991#0 CCGCCGGTGCAGGCCTCGCTGTCGCCGTGCGTCAGCTACTTCATCGGCAACTCGTCGACG 238
consensus_1991#1 CCGCCGGTGCAGGCCTCGCTGTCGCCGTGCGTCAGCTACTTCATCGGCAACTCGTCGACG 240
************************************************************
consensus_1991#0 CCGTCGGACGCGTGCTGCGAGCAGATGCGGGCCATGTTCCAGTCGCAGGCGCCCTGCCTC 298
consensus_1991#1 CCGTCGGACGCGTGCTGCGAGCAGATGCGGGCCATGTTCCAGTCGCAGGCGCCCTGCCTC 300
************************************************************
consensus_1991#0 TGCGCCGCCGTGGCGTCGGCGCCGTCCCCGCTCGCGCCGGTGCTCGGCGGGGTGCAGTCG 358
consensus_1991#1 TGCGCCGCCGTGGCGTCGGCGCCGTCCCCGCTCGCGCCGGTGCTCGGCGGGGTGCAGTCG 360
************************************************************
consensus_1991#0 CTGCTCCCAACCGCCTGCAACCTGCCTCCCAATGCCTGCGCAG----------------- 401
consensus_1991#1 CTGCTCCCAACCGCCTGCAACCTGCCTCCCAATGCCTGCGCAGGTAAGCCGTTCGTTCGT 420
*******************************************
consensus_1991#0 ------------------------------------------------------------
consensus_1991#1 GCCGTGCCAATACTTACTTGTGGACTGAACTCGCGTACGCATGGAGTGATCGCCGTGGCG 480
consensus_1991#0 ----------------ATGCGACAGGGTCGACGTCGGGCTCTGCTCCGGCCGGCGGCTCG 445
consensus_1991#1 GGCGTGGTGTTTGCAGATGCGACAGGGTCGACGTCGGGCTCTGCTCCGGCCGGCGGCTCG 540
********************************************
consensus_1991#0 TCGGCGACGCCGTCCACGGGGGCAACTGCCGCCGCGCCGGCCATGGAGCCCGCTGGCATG 505
consensus_1991#1 TCGGCGACGCCGTCCACGGGGGCAACTGCCGCCGCGCCGGCCATGGAGCCCGCTGGCATG 600
************************************************************
consensus_1991#0 GACCCGGCGATGACTGCAGGTGGTGGATCCAAGTCAGTGCCGGGTATGCCGTACTCGGCG 565
consensus_1991#1 GACCCGGCGATGACTGCAGGTGGTGGATCCAAGTCAGTGCCGGGTATGCCGTACTCGGCG 660
************************************************************
consensus_1991#0 GCCGCCGGAGTCCATGGTGGTGGCGCCTCTGCTGCCGTCGCCGTCTTGATCTCCTCCATG 625
consensus_1991#1 GCCGCCGGAGTCCATGGTGGTGGCGCCTCTGCTGCCGTCGCCGTCTTGATCTCCTCCATG 720
************************************************************
consensus_1991#0 CTTGCTTATGCTTGTATGATCTGAGATGCATGGCTGGTCTTATATACACACGTCCATTGT 685
consensus_1991#1 CTTGCTTATGCTTGTATGATCTGAGATGCATGGCTGGTCTTATATACACACGTC------ 774
******************************************************
consensus_1991#0 GATTTGTGATCGTGATGGTATATGCACATCAGCACATGTGCATCGTTATTAGCTTGCTTT 745
consensus_1991#1 ------------------------------------------------------------
consensus_1991#0 TCAGGTTAGAAGACTTTGAGTTAATATGCCATTTGCGGATGTAATTAATTTGTAACAACA 805
consensus_1991#1 ------------------------------------------------------------
consensus_1991#0 TTGTTATGGAGTATTTCGACATAATAAGATAG 837
consensus_1991#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||