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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1996#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1123 fasta sequence
[CGGCCGCGGAGAGCATCGCGTCCCACCCCCCACCGCCGCGGCGGCGATGGCCGCCGCCGCCGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGGCTCATCAGCATTCTAAATAGGTTCAGGCGACAGACAGGTGCAATAGACAGCGACAACTAAACAGAAGCCTACCAGTCTTCTCTTATCCTTACGACCTTACAAGTCATGGCCGGTAATTATGATTTATGGAGTGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTCTCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGAGCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGATCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGTGGAGGACAAGCAAATTGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCATGGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAAGGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCAGAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGGAACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGACAGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAGCAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCGTTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCGGACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGTCACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAGTTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTT]
[+] EMBL AK058598 [CGGCCGCGGAGAGCATCGCGTCCCACCCCCCACCGCCGCGGCGGCGATGGCCGCCGCCGCCGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGGCTCATCAGCATTCTAAATAGGTTCAGGCGACAGACAGGTGCAATAGACAGCGACAACTAAACAGAAGCCTACCAGTCTTCTCTTATCCTTACGACCTTACAAGTCATGGCCGGTAATTATGATTTATGGAGTGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTCTCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGAGCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGATCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGTGGAGGACAAGCAAATTGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCATGGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAAGGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCAGAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGGAACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGACAGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAGCAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCGTTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCGGACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGTCACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAGTTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTT]
consensusID : consensus_1996#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1048 fasta sequence
[CCCCACCGCCGCGGCGGCGATGGCCGCCGCCGCCGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGGCTCATCAGTGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTCTCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGAGCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGATCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGTGGAGGACAAGCAAATCGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCATGGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAAGGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCAGAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGGAACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGACAGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAGCAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCGTTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCGGACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGTCACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAGTTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTTCTTCGACAGTAAAATTATCAAATTTGTACGGTTGGAAGGATTTTCAGTTAATTAACTTATAATGTTACGCACGAA]
[+] EMBL AK069753 [CCCCACCGCCGCGGCGGCGATGGCCGCCGCCGCCGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGGCTCATCAGTGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTCTCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGAGCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGATCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGTGGAGGACAAGCAAATCGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCATGGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAAGGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCAGAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGGAACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGACAGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAGCAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCGTTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCGGACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGTCACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAGTTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTTCTTCGACAGTAAAATTATCAAATTTGTACGGTTGGAAGGATTTTCAGTTAATTAACTTATAATGTTACGCACGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1996#0 CGGCCGCGGAGAGCATCGCGTCCCACCCCCCACCGCCGCGGCGGCGATGGCCGCCGCCGC 60
consensus_1996#1 ---------------------------CCCCACCGCCGCGGCGGCGATGGCCGCCGCCGC 33
*********************************
consensus_1996#0 CGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGG 120
consensus_1996#1 CGCCGCCACCGCGCGCTCCTCGGTGGCGCCGCACGCATCGCCCACCCTTCGCCGCTCGGG 93
************************************************************
consensus_1996#0 CTCATCAGCATTCTAAATAGGTTCAGGCGACAGACAGGTGCAATAGACAGCGACAACTAA 180
consensus_1996#1 CTCATCAG---------------------------------------------------- 101
********
consensus_1996#0 ACAGAAGCCTACCAGTCTTCTCTTATCCTTACGACCTTACAAGTCATGGCCGGTAATTAT 240
consensus_1996#1 ------------------------------------------------------------
consensus_1996#0 GATTTATGGAGTGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTC 300
consensus_1996#1 -----------TGGATCGCTGCACTTCCTGAGAGTTCTTTTAAAGATATTACCGTCTCTC 150
*************************************************
consensus_1996#0 TCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGA 360
consensus_1996#1 TCAACGCTTACCGGAATTGCAGATTCGATCTATTTGCTTCGACTGCAAAAGCAGGCTAGA 210
************************************************************
consensus_1996#0 GCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGA 420
consensus_1996#1 GCTGCGGCTGGGTGCATCCCATCCACTCATTTTTCAGTGGCCATGCTAGCCTGCTAGGGA 270
************************************************************
consensus_1996#0 TCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGT 480
consensus_1996#1 TCACATTGGGAAGGGAAACAATCAAATAATCCGCGGTGGTCTCAGCTCAGCTGCATGTGT 330
************************************************************
consensus_1996#0 GGAGGACAAGCAAATTGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCAT 540
consensus_1996#1 GGAGGACAAGCAAATCGCCAATAACACACCACATGGGGCAACATCGCGCAGACATGGCAT 390
*************** ********************************************
consensus_1996#0 GGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAA 600
consensus_1996#1 GGACCCTGCTTGCCATCTACCCCTCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAA 450
************************************************************
consensus_1996#0 GGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCA 660
consensus_1996#1 GGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACTGCCATATGTTTCCATCA 510
************************************************************
consensus_1996#0 GAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGG 720
consensus_1996#1 GAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGG 570
************************************************************
consensus_1996#0 AACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGAC 780
consensus_1996#1 AACAAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGAC 630
************************************************************
consensus_1996#0 AGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAG 840
consensus_1996#1 AGCTCCACGCACATTTCACACAAAAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAG 690
************************************************************
consensus_1996#0 CAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCG 900
consensus_1996#1 CAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCTCGTCCAATTCCATCGCG 750
************************************************************
consensus_1996#0 TTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCG 960
consensus_1996#1 TTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCG 810
************************************************************
consensus_1996#0 GACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGT 1020
consensus_1996#1 GACCTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGT 870
************************************************************
consensus_1996#0 CACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAG 1080
consensus_1996#1 CACGTCGGGTTTTCGCTTCGCTTGCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAG 930
************************************************************
consensus_1996#0 TTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTT----------------- 1123
consensus_1996#1 TTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTTCTTCGACAGTAAAATTA 990
*******************************************
consensus_1996#0 ----------------------------------------------------------
consensus_1996#1 TCAAATTTGTACGGTTGGAAGGATTTTCAGTTAATTAACTTATAATGTTACGCACGAA 1048
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||