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Oryza sativa
cluster # 2008 cluster # 2008       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2008#0 length = 1358 sequences # 1  
consensus_2008#1 length = 286 sequences # 1  

consensusID : consensus_2008#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1358
fasta sequence
                              [GCGACGGCGACGGCGACGGCGAGCATGGCGGCGGCGGCGCCGGAGTTGGTGGACGACATGACCTACGAGATCCTCCTCCACATCCCGCCGGACGATCCCGCGTCCCTCGTCCGCGCCTCCCTCGTCTGCAAGCGCTGGCGTCAACTCCTCACCGATCCCGCCTTCCTCCGCCGCTACCGCGCATTCCACCGAACACCTCCCATGCTCGGCTTCATCCACAACGTTGACCACAGCAGCAACAGCTCCTACATCCCCCGCTTCGTCGCCACCACCTCCCCCTCTCCATTCTACCCCGATTTCCCTCCACCGAGCATCGAGTTCCCCACCTACTGGTGGGCGCTCGATTGCCGCCATGGCCGCCTCCTCCTCCAACTCTTCAATCCCATCGACCTCATGGTCTGGGACCCGACCACCGGCGACCACCGCATCTTCCCTCAGCCCCCGTACCTGGACTTCTACTGCACTGGGGCCGTGCTGTGCGCTACACGCGGCTGCCGCCATGTTGACTGCCATGGAGGCCCCTACCTCGTCGTCTTCGTGGGCACAGGAGAGGATGACCACTCATGGGCGTGCGTGTACTCGTCGGAGACTGGAGAGTGGAGCTCGCAGGCCTCCATTGCGTTCGATTCCTATGTTGAGATGTTGCCTGGCCTCCTCGTCCAAGACACGCTCTACTTCAGATGTGAGCGTGGCAAGAGAATTCTGGGGTATGACATTGGCAGGCATGAGCTCTCGGAGATCGACCCGCCCCCATTGGGGCATGAGGTTGGCATCCTCATGGAATCAGGATATGGTGGGCTGGGATTTGCTACTGTGGAAGATTGCAGCATCCTACTGTGGTCGCGGTATGTGGGTGATGATGGCATTGAGGAATGGAAAAAATCCTGGGTAATTGGGTTGGTCTTTCTGAATCCGGTGGGTAACCCGTCGTTGTCGTGGGAACTGGCCGGTTTCGCCGAAGGCGTGCATACCATTTTCATCTCATCAGAGATTGGTGTGTTCACAATTGAGCTCAAATCAGGCCAAGTGAAGAAGCTGTGTGAGGAGGGCTACTATACCGTCGTCCCCTACATGAGCTTTTACACTTCAGATATTGCTATATGGAGGCCGGAGGAACCAGCTGAAGACTGAAGTGCAGTGACCCATCCATTAAGCTTCTGGTATCTTACAGAGCTAGTCCTCTTATTATCTTTTAAGATGGGGAGTTGAAGTAAGAAGAGAGTACTATGTGACCGTGCTCAGATAAGATGTTTGATTTCAGTTTGTAATGCAACTGAGAAAGGATGGCTCACACAGTGAACATTTGTTTCTTCTCATTTAACTGCTTATGATCGTTACCATGCATATATATCTTTGAA]

[+] EMBL AK107254             [GCGACGGCGACGGCGACGGCGAGCATGGCGGCGGCGGCGCCGGAGTTGGTGGACGACATGACCTACGAGATCCTCCTCCACATCCCGCCGGACGATCCCGCGTCCCTCGTCCGCGCCTCCCTCGTCTGCAAGCGCTGGCGTCAACTCCTCACCGATCCCGCCTTCCTCCGCCGCTACCGCGCATTCCACCGAACACCTCCCATGCTCGGCTTCATCCACAACGTTGACCACAGCAGCAACAGCTCCTACATCCCCCGCTTCGTCGCCACCACCTCCCCCTCTCCATTCTACCCCGATTTCCCTCCACCGAGCATCGAGTTCCCCACCTACTGGTGGGCGCTCGATTGCCGCCATGGCCGCCTCCTCCTCCAACTCTTCAATCCCATCGACCTCATGGTCTGGGACCCGACCACCGGCGACCACCGCATCTTCCCTCAGCCCCCGTACCTGGACTTCTACTGCACTGGGGCCGTGCTGTGCGCTACACGCGGCTGCCGCCATGTTGACTGCCATGGAGGCCCCTACCTCGTCGTCTTCGTGGGCACAGGAGAGGATGACCACTCATGGGCGTGCGTGTACTCGTCGGAGACTGGAGAGTGGAGCTCGCAGGCCTCCATTGCGTTCGATTCCTATGTTGAGATGTTGCCTGGCCTCCTCGTCCAAGACACGCTCTACTTCAGATGTGAGCGTGGCAAGAGAATTCTGGGGTATGACATTGGCAGGCATGAGCTCTCGGAGATCGACCCGCCCCCATTGGGGCATGAGGTTGGCATCCTCATGGAATCAGGATATGGTGGGCTGGGATTTGCTACTGTGGAAGATTGCAGCATCCTACTGTGGTCGCGGTATGTGGGTGATGATGGCATTGAGGAATGGAAAAAATCCTGGGTAATTGGGTTGGTCTTTCTGAATCCGGTGGGTAACCCGTCGTTGTCGTGGGAACTGGCCGGTTTCGCCGAAGGCGTGCATACCATTTTCATCTCATCAGAGATTGGTGTGTTCACAATTGAGCTCAAATCAGGCCAAGTGAAGAAGCTGTGTGAGGAGGGCTACTATACCGTCGTCCCCTACATGAGCTTTTACACTTCAGATATTGCTATATGGAGGCCGGAGGAACCAGCTGAAGACTGAAGTGCAGTGACCCATCCATTAAGCTTCTGGTATCTTACAGAGCTAGTCCTCTTATTATCTTTTAAGATGGGGAGTTGAAGTAAGAAGAGAGTACTATGTGACCGTGCTCAGATAAGATGTTTGATTTCAGTTTGTAATGCAACTGAGAAAGGATGGCTCACACAGTGAACATTTGTTTCTTCTCATTTAACTGCTTATGATCGTTACCATGCATATATATCTTTGAA]


>consensus_2008#0 GCGACGGCGACGGCGACGGCGAGCATGGCGGCGGCGGCGCCGGAGTTGGTGGACGACATG ACCTACGAGATCCTCCTCCACATCCCGCCGGACGATCCCGCGTCCCTCGTCCGCGCCTCC CTCGTCTGCAAGCGCTGGCGTCAACTCCTCACCGATCCCGCCTTCCTCCGCCGCTACCGC GCATTCCACCGAACACCTCCCATGCTCGGCTTCATCCACAACGTTGACCACAGCAGCAAC AGCTCCTACATCCCCCGCTTCGTCGCCACCACCTCCCCCTCTCCATTCTACCCCGATTTC CCTCCACCGAGCATCGAGTTCCCCACCTACTGGTGGGCGCTCGATTGCCGCCATGGCCGC CTCCTCCTCCAACTCTTCAATCCCATCGACCTCATGGTCTGGGACCCGACCACCGGCGAC CACCGCATCTTCCCTCAGCCCCCGTACCTGGACTTCTACTGCACTGGGGCCGTGCTGTGC GCTACACGCGGCTGCCGCCATGTTGACTGCCATGGAGGCCCCTACCTCGTCGTCTTCGTG GGCACAGGAGAGGATGACCACTCATGGGCGTGCGTGTACTCGTCGGAGACTGGAGAGTGG AGCTCGCAGGCCTCCATTGCGTTCGATTCCTATGTTGAGATGTTGCCTGGCCTCCTCGTC CAAGACACGCTCTACTTCAGATGTGAGCGTGGCAAGAGAATTCTGGGGTATGACATTGGC AGGCATGAGCTCTCGGAGATCGACCCGCCCCCATTGGGGCATGAGGTTGGCATCCTCATG GAATCAGGATATGGTGGGCTGGGATTTGCTACTGTGGAAGATTGCAGCATCCTACTGTGG TCGCGGTATGTGGGTGATGATGGCATTGAGGAATGGAAAAAATCCTGGGTAATTGGGTTG GTCTTTCTGAATCCGGTGGGTAACCCGTCGTTGTCGTGGGAACTGGCCGGTTTCGCCGAA GGCGTGCATACCATTTTCATCTCATCAGAGATTGGTGTGTTCACAATTGAGCTCAAATCA GGCCAAGTGAAGAAGCTGTGTGAGGAGGGCTACTATACCGTCGTCCCCTACATGAGCTTT TACACTTCAGATATTGCTATATGGAGGCCGGAGGAACCAGCTGAAGACTGAAGTGCAGTG ACCCATCCATTAAGCTTCTGGTATCTTACAGAGCTAGTCCTCTTATTATCTTTTAAGATG GGGAGTTGAAGTAAGAAGAGAGTACTATGTGACCGTGCTCAGATAAGATGTTTGATTTCA GTTTGTAATGCAACTGAGAAAGGATGGCTCACACAGTGAACATTTGTTTCTTCTCATTTA ACTGCTTATGATCGTTACCATGCATATATATCTTTGAA



consensusID : consensus_2008#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence
                              [TTCGCAGNNTACCATTTTCATCTCATCANAAATTGGTGTGTTCNCNATNGAGCTCAAATCAAGCCAANTGAAAAACTGTGTNANGAAGGCTACTATACCGTCCTCCCCNACATGAACTTTTACACTTCACATATTGCTATATGGNANGCCGGAAGAACCNNCTGAANACTGAAGTGCAGTGACCCATCCATTAAGCTTCTGGTATCTTACAAAACTANGTCCTCTNATTATCTTTTAANATGGGGAGTTGAANTTNGAANAAAATACTATGTNANGGGGGGNGGGN]

[+] EMBL BE228500             [TTCGCAGNNTACCATTTTCATCTCATCANAAATTGGTGTGTTCNCNATNGAGCTCAAATCAAGCCAANTGAAAAACTGTGTNANGAAGGCTACTATACCGTCCTCCCCNACATGAACTTTTACACTTCACATATTGCTATATGGNANGCCGGAAGAACCNNCTGAANACTGAAGTGCAGTGACCCATCCATTAAGCTTCTGGTATCTTACAAAACTANGTCCTCTNATTATCTTTTAANATGGGGAGTTGAANTTNGAANAAAATACTATGTNANGGGGGGNGGGN]


>consensus_2008#1 TTCGCAGNNTACCATTTTCATCTCATCANAAATTGGTGTGTTCNCNATNGAGCTCAAATC AAGCCAANTGAAAAACTGTGTNANGAAGGCTACTATACCGTCCTCCCCNACATGAACTTT TACACTTCACATATTGCTATATGGNANGCCGGAAGAACCNNCTGAANACTGAAGTGCAGT GACCCATCCATTAAGCTTCTGGTATCTTACAAAACTANGTCCTCTNATTATCTTTTAANA TGGGGAGTTGAANTTNGAANAAAATACTATGTNANGGGGGGNGGGN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2008#0      GCGACGGCGACGGCGACGGCGAGCATGGCGGCGGCGGCGCCGGAGTTGGTGGACGACATG 60
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      ACCTACGAGATCCTCCTCCACATCCCGCCGGACGATCCCGCGTCCCTCGTCCGCGCCTCC 120
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      CTCGTCTGCAAGCGCTGGCGTCAACTCCTCACCGATCCCGCCTTCCTCCGCCGCTACCGC 180
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      GCATTCCACCGAACACCTCCCATGCTCGGCTTCATCCACAACGTTGACCACAGCAGCAAC 240
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      AGCTCCTACATCCCCCGCTTCGTCGCCACCACCTCCCCCTCTCCATTCTACCCCGATTTC 300
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      CCTCCACCGAGCATCGAGTTCCCCACCTACTGGTGGGCGCTCGATTGCCGCCATGGCCGC 360
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      CTCCTCCTCCAACTCTTCAATCCCATCGACCTCATGGTCTGGGACCCGACCACCGGCGAC 420
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      CACCGCATCTTCCCTCAGCCCCCGTACCTGGACTTCTACTGCACTGGGGCCGTGCTGTGC 480
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      GCTACACGCGGCTGCCGCCATGTTGACTGCCATGGAGGCCCCTACCTCGTCGTCTTCGTG 540
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      GGCACAGGAGAGGATGACCACTCATGGGCGTGCGTGTACTCGTCGGAGACTGGAGAGTGG 600
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      AGCTCGCAGGCCTCCATTGCGTTCGATTCCTATGTTGAGATGTTGCCTGGCCTCCTCGTC 660
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      CAAGACACGCTCTACTTCAGATGTGAGCGTGGCAAGAGAATTCTGGGGTATGACATTGGC 720
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      AGGCATGAGCTCTCGGAGATCGACCCGCCCCCATTGGGGCATGAGGTTGGCATCCTCATG 780
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      GAATCAGGATATGGTGGGCTGGGATTTGCTACTGTGGAAGATTGCAGCATCCTACTGTGG 840
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      TCGCGGTATGTGGGTGATGATGGCATTGAGGAATGGAAAAAATCCTGGGTAATTGGGTTG 900
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      GTCTTTCTGAATCCGGTGGGTAACCCGTCGTTGTCGTGGGAACTGGCCGGTTTCGCCGAA 960
consensus_2008#1      ---------------------------------------------------TTCGC---- 5
                                                                         *****    

consensus_2008#0      GGCGTGCATACCATTTTCATCTCATCAGAGATTGGTGTGTTCACAATTGAGCTCAAATCA 1020
consensus_2008#1      ----AGNNTACCATTTTCATCTCATCANAAATTGGTGTGTTCNCNATNGAGCTCAAATCA 61
                           *  ******************* * ************ * ** ************

consensus_2008#0      GGCCAAGTGAAGAAGCTGTGTGAGGAGGGCTACTATACCGTCGTCCCCTACATGAGCTTT 1080
consensus_2008#1      AGCCAANTGAA-AAACTGTGTNANGAAGGCTACTATACCGTCCTCCCCNACATGAACTTT 120
                       ***** **** ** ****** * ** *************** ***** ****** ****

consensus_2008#0      TACACTTCAGATATTGCTATATGGA-GGCCGGAGGAACCAGCTGAAGACTGAAGTGCAGT 1139
consensus_2008#1      TACACTTCACATATTGCTATATGGNANGCCGGAAGAACCNNCTGAANACTGAAGTGCAGT 180
                      ********* **************   ****** *****  ***** *************

consensus_2008#0      GACCCATCCATTAAGCTTCTGGTATCTTACAGAGCTAG-TCCTCTTATTATCTTTTAAGA 1198
consensus_2008#1      GACCCATCCATTAAGCTTCTGGTATCTTACAAAACTANGTCCTCTNATTATCTTTTAANA 240
                      ******************************* * ***  ****** ************ *

consensus_2008#0      TGGGGAGTTGAAGTAAGAAGAGAGTACTATGTGACCGTGCTCAGATAAGATGTTTGATTT 1258
consensus_2008#1      TGGGGAGTTGAANTTNGAANAAAATACTATGTNANGGGGGGNGGGN-------------- 286
                      ************ *  *** * * ******** *  * *    *                

consensus_2008#0      CAGTTTGTAATGCAACTGAGAAAGGATGGCTCACACAGTGAACATTTGTTTCTTCTCATT 1318
consensus_2008#1      ------------------------------------------------------------
                                                                                  

consensus_2008#0      TAACTGCTTATGATCGTTACCATGCATATATATCTTTGAA 1358
consensus_2008#1      ----------------------------------------
                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)