These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2008#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1358 fasta sequence [GCGACGGCGACGGCGACGGCGAGCATGGCGGCGGCGGCGCCGGAGTTGGTGGACGACATGACCTACGAGATCCTCCTCCACATCCCGCCGGACGATCCCGCGTCCCTCGTCCGCGCCTCCCTCGTCTGCAAGCGCTGGCGTCAACTCCTCACCGATCCCGCCTTCCTCCGCCGCTACCGCGCATTCCACCGAACACCTCCCATGCTCGGCTTCATCCACAACGTTGACCACAGCAGCAACAGCTCCTACATCCCCCGCTTCGTCGCCACCACCTCCCCCTCTCCATTCTACCCCGATTTCCCTCCACCGAGCATCGAGTTCCCCACCTACTGGTGGGCGCTCGATTGCCGCCATGGCCGCCTCCTCCTCCAACTCTTCAATCCCATCGACCTCATGGTCTGGGACCCGACCACCGGCGACCACCGCATCTTCCCTCAGCCCCCGTACCTGGACTTCTACTGCACTGGGGCCGTGCTGTGCGCTACACGCGGCTGCCGCCATGTTGACTGCCATGGAGGCCCCTACCTCGTCGTCTTCGTGGGCACAGGAGAGGATGACCACTCATGGGCGTGCGTGTACTCGTCGGAGACTGGAGAGTGGAGCTCGCAGGCCTCCATTGCGTTCGATTCCTATGTTGAGATGTTGCCTGGCCTCCTCGTCCAAGACACGCTCTACTTCAGATGTGAGCGTGGCAAGAGAATTCTGGGGTATGACATTGGCAGGCATGAGCTCTCGGAGATCGACCCGCCCCCATTGGGGCATGAGGTTGGCATCCTCATGGAATCAGGATATGGTGGGCTGGGATTTGCTACTGTGGAAGATTGCAGCATCCTACTGTGGTCGCGGTATGTGGGTGATGATGGCATTGAGGAATGGAAAAAATCCTGGGTAATTGGGTTGGTCTTTCTGAATCCGGTGGGTAACCCGTCGTTGTCGTGGGAACTGGCCGGTTTCGCCGAAGGCGTGCATACCATTTTCATCTCATCAGAGATTGGTGTGTTCACAATTGAGCTCAAATCAGGCCAAGTGAAGAAGCTGTGTGAGGAGGGCTACTATACCGTCGTCCCCTACATGAGCTTTTACACTTCAGATATTGCTATATGGAGGCCGGAGGAACCAGCTGAAGACTGAAGTGCAGTGACCCATCCATTAAGCTTCTGGTATCTTACAGAGCTAGTCCTCTTATTATCTTTTAAGATGGGGAGTTGAAGTAAGAAGAGAGTACTATGTGACCGTGCTCAGATAAGATGTTTGATTTCAGTTTGTAATGCAACTGAGAAAGGATGGCTCACACAGTGAACATTTGTTTCTTCTCATTTAACTGCTTATGATCGTTACCATGCATATATATCTTTGAA] [+] EMBL AK107254 [GCGACGGCGACGGCGACGGCGAGCATGGCGGCGGCGGCGCCGGAGTTGGTGGACGACATGACCTACGAGATCCTCCTCCACATCCCGCCGGACGATCCCGCGTCCCTCGTCCGCGCCTCCCTCGTCTGCAAGCGCTGGCGTCAACTCCTCACCGATCCCGCCTTCCTCCGCCGCTACCGCGCATTCCACCGAACACCTCCCATGCTCGGCTTCATCCACAACGTTGACCACAGCAGCAACAGCTCCTACATCCCCCGCTTCGTCGCCACCACCTCCCCCTCTCCATTCTACCCCGATTTCCCTCCACCGAGCATCGAGTTCCCCACCTACTGGTGGGCGCTCGATTGCCGCCATGGCCGCCTCCTCCTCCAACTCTTCAATCCCATCGACCTCATGGTCTGGGACCCGACCACCGGCGACCACCGCATCTTCCCTCAGCCCCCGTACCTGGACTTCTACTGCACTGGGGCCGTGCTGTGCGCTACACGCGGCTGCCGCCATGTTGACTGCCATGGAGGCCCCTACCTCGTCGTCTTCGTGGGCACAGGAGAGGATGACCACTCATGGGCGTGCGTGTACTCGTCGGAGACTGGAGAGTGGAGCTCGCAGGCCTCCATTGCGTTCGATTCCTATGTTGAGATGTTGCCTGGCCTCCTCGTCCAAGACACGCTCTACTTCAGATGTGAGCGTGGCAAGAGAATTCTGGGGTATGACATTGGCAGGCATGAGCTCTCGGAGATCGACCCGCCCCCATTGGGGCATGAGGTTGGCATCCTCATGGAATCAGGATATGGTGGGCTGGGATTTGCTACTGTGGAAGATTGCAGCATCCTACTGTGGTCGCGGTATGTGGGTGATGATGGCATTGAGGAATGGAAAAAATCCTGGGTAATTGGGTTGGTCTTTCTGAATCCGGTGGGTAACCCGTCGTTGTCGTGGGAACTGGCCGGTTTCGCCGAAGGCGTGCATACCATTTTCATCTCATCAGAGATTGGTGTGTTCACAATTGAGCTCAAATCAGGCCAAGTGAAGAAGCTGTGTGAGGAGGGCTACTATACCGTCGTCCCCTACATGAGCTTTTACACTTCAGATATTGCTATATGGAGGCCGGAGGAACCAGCTGAAGACTGAAGTGCAGTGACCCATCCATTAAGCTTCTGGTATCTTACAGAGCTAGTCCTCTTATTATCTTTTAAGATGGGGAGTTGAAGTAAGAAGAGAGTACTATGTGACCGTGCTCAGATAAGATGTTTGATTTCAGTTTGTAATGCAACTGAGAAAGGATGGCTCACACAGTGAACATTTGTTTCTTCTCATTTAACTGCTTATGATCGTTACCATGCATATATATCTTTGAA] consensusID : consensus_2008#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [TTCGCAGNNTACCATTTTCATCTCATCANAAATTGGTGTGTTCNCNATNGAGCTCAAATCAAGCCAANTGAAAAACTGTGTNANGAAGGCTACTATACCGTCCTCCCCNACATGAACTTTTACACTTCACATATTGCTATATGGNANGCCGGAAGAACCNNCTGAANACTGAAGTGCAGTGACCCATCCATTAAGCTTCTGGTATCTTACAAAACTANGTCCTCTNATTATCTTTTAANATGGGGAGTTGAANTTNGAANAAAATACTATGTNANGGGGGGNGGGN] [+] EMBL BE228500 [TTCGCAGNNTACCATTTTCATCTCATCANAAATTGGTGTGTTCNCNATNGAGCTCAAATCAAGCCAANTGAAAAACTGTGTNANGAAGGCTACTATACCGTCCTCCCCNACATGAACTTTTACACTTCACATATTGCTATATGGNANGCCGGAAGAACCNNCTGAANACTGAAGTGCAGTGACCCATCCATTAAGCTTCTGGTATCTTACAAAACTANGTCCTCTNATTATCTTTTAANATGGGGAGTTGAANTTNGAANAAAATACTATGTNANGGGGGGNGGGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2008#0 GCGACGGCGACGGCGACGGCGAGCATGGCGGCGGCGGCGCCGGAGTTGGTGGACGACATG 60 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 ACCTACGAGATCCTCCTCCACATCCCGCCGGACGATCCCGCGTCCCTCGTCCGCGCCTCC 120 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 CTCGTCTGCAAGCGCTGGCGTCAACTCCTCACCGATCCCGCCTTCCTCCGCCGCTACCGC 180 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 GCATTCCACCGAACACCTCCCATGCTCGGCTTCATCCACAACGTTGACCACAGCAGCAAC 240 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 AGCTCCTACATCCCCCGCTTCGTCGCCACCACCTCCCCCTCTCCATTCTACCCCGATTTC 300 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 CCTCCACCGAGCATCGAGTTCCCCACCTACTGGTGGGCGCTCGATTGCCGCCATGGCCGC 360 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 CTCCTCCTCCAACTCTTCAATCCCATCGACCTCATGGTCTGGGACCCGACCACCGGCGAC 420 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 CACCGCATCTTCCCTCAGCCCCCGTACCTGGACTTCTACTGCACTGGGGCCGTGCTGTGC 480 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 GCTACACGCGGCTGCCGCCATGTTGACTGCCATGGAGGCCCCTACCTCGTCGTCTTCGTG 540 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 GGCACAGGAGAGGATGACCACTCATGGGCGTGCGTGTACTCGTCGGAGACTGGAGAGTGG 600 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 AGCTCGCAGGCCTCCATTGCGTTCGATTCCTATGTTGAGATGTTGCCTGGCCTCCTCGTC 660 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 CAAGACACGCTCTACTTCAGATGTGAGCGTGGCAAGAGAATTCTGGGGTATGACATTGGC 720 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 AGGCATGAGCTCTCGGAGATCGACCCGCCCCCATTGGGGCATGAGGTTGGCATCCTCATG 780 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 GAATCAGGATATGGTGGGCTGGGATTTGCTACTGTGGAAGATTGCAGCATCCTACTGTGG 840 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 TCGCGGTATGTGGGTGATGATGGCATTGAGGAATGGAAAAAATCCTGGGTAATTGGGTTG 900 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 GTCTTTCTGAATCCGGTGGGTAACCCGTCGTTGTCGTGGGAACTGGCCGGTTTCGCCGAA 960 consensus_2008#1 ---------------------------------------------------TTCGC---- 5 ***** consensus_2008#0 GGCGTGCATACCATTTTCATCTCATCAGAGATTGGTGTGTTCACAATTGAGCTCAAATCA 1020 consensus_2008#1 ----AGNNTACCATTTTCATCTCATCANAAATTGGTGTGTTCNCNATNGAGCTCAAATCA 61 * ******************* * ************ * ** ************ consensus_2008#0 GGCCAAGTGAAGAAGCTGTGTGAGGAGGGCTACTATACCGTCGTCCCCTACATGAGCTTT 1080 consensus_2008#1 AGCCAANTGAA-AAACTGTGTNANGAAGGCTACTATACCGTCCTCCCCNACATGAACTTT 120 ***** **** ** ****** * ** *************** ***** ****** **** consensus_2008#0 TACACTTCAGATATTGCTATATGGA-GGCCGGAGGAACCAGCTGAAGACTGAAGTGCAGT 1139 consensus_2008#1 TACACTTCACATATTGCTATATGGNANGCCGGAAGAACCNNCTGAANACTGAAGTGCAGT 180 ********* ************** ****** ***** ***** ************* consensus_2008#0 GACCCATCCATTAAGCTTCTGGTATCTTACAGAGCTAG-TCCTCTTATTATCTTTTAAGA 1198 consensus_2008#1 GACCCATCCATTAAGCTTCTGGTATCTTACAAAACTANGTCCTCTNATTATCTTTTAANA 240 ******************************* * *** ****** ************ * consensus_2008#0 TGGGGAGTTGAAGTAAGAAGAGAGTACTATGTGACCGTGCTCAGATAAGATGTTTGATTT 1258 consensus_2008#1 TGGGGAGTTGAANTTNGAANAAAATACTATGTNANGGGGGGNGGGN-------------- 286 ************ * *** * * ******** * * * * consensus_2008#0 CAGTTTGTAATGCAACTGAGAAAGGATGGCTCACACAGTGAACATTTGTTTCTTCTCATT 1318 consensus_2008#1 ------------------------------------------------------------ consensus_2008#0 TAACTGCTTATGATCGTTACCATGCATATATATCTTTGAA 1358 consensus_2008#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||