These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2010#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [GTTCCCCCTTGGCGGCCCTCGCCCGAGACTCTGTGCATCAAGCGTCTCGCCGACGGCTACAACCACGGCCCGCTCGGCGACTGGACCAAGGCGCCCCGGCCGCTCCATCTTCGTCGACCCAAGAGAGTTTTAGGAGGATTTTAGCTTTCCGTTTTTCCCTAGGCCTTTAGGGTTTTTTCCCGACCGTCCGATCTCCTCCCGCACATCCGACGGCGGGCAGTCGCTCCCTAGAACCAGCAGCGTCACCCCAAACATGTGTCACTCTTCATCTCGTCGTATTTCCCGTTCCATTGACCATCACTTTTTTTTTTAGCTTTTAGGTGTGAATACAGTAATAGTAGTACCTTTTTCCCAGCTAAAAAAATTCAGAAAAGGGAGCTGCTTAACTGTAACTCGTTTGCTACTGCGTACTTTTGCCTCATTGCCGTTTACAAACATCCTGTGCGCACAGTACTTGCATGTGTATCGAAAGGCATCGACATGGAATAGACCTGAAGAGGATACATGTCTGTTGGCTGTTCCAACGCAACCGGCTTATTACCGGGAAAAA] [+] EMBL BI813531 [GTTCCCCCTTGGCGGCCCTCGCCCGAGACTCTGTGCATCAAGCGTCTCGCCGACGGCTACAACCACGGCCCGCTCGGCGACTGGACCAAGGCGCCCCGGCCGCTCCATCTTCGTCGACCCAAGAGAGTTTTAGGAGGATTTTAGCTTTCCGTTTTTCCCTAGGCCTTTAGGGTTTTTTCCCGACCGTCCGATCTCCTCCCGCACATCCGACGGCGGGCAGTCGCTCCCTAGAACCAGCAGCGTCACCCCAAACATGTGTCACTCTTCATCTCGTCGTATTTCCCGTTCCATTGACCATCACTTTTTTTTTTAGCTTTTAGGTGTGAATACAGTAATAGTAGTACCTTTTTCCCAGCTAAAAAAATTCAGAAAAGGGAGCTGCTTAACTGTAACTCGTTTGCTACTGCGTACTTTTGCCTCATTGCCGTTTACAAACATCCTGTGCGCACAGTACTTGCATGTGTATCGAAAGGCATCGACATGGAATAGACCTGAAGAGGATACATGTCTGTTGGCTGTTCCAACGCAACCGGCTTATTACCGGGAAAAA] consensusID : consensus_2010#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence [CCACGCCCACAACATGCCCGCAAGGCCGTTCGGCGTGTTCCCCACCGAGGTCTCCGCCTGCGAGCCCGTCCGCCCGGCGTCCGCATTGGGCGCGCCTCGGCCCGAGGACCTCTGGTGCATCAAGCGTCTCGCCGACGGCTACAACCACGGCCCGCTCGGCGACTGGACCAAGGCGCCGCCGGCCGCTCCATCTTCGTCGACCCAAGAGAGTTTTAGGAGGATTTTAGCTTTCCGTTTTTCCCTAGGCCTTTAGGGTTTTTTCCCGACCGTCCGATCTCCTCCCGCACATCCGACGGCGGGCAGTCGCTCCCTAGAACCAGCAGCGTCACCCCAAACATGTGTCACTCTTCATCTCGTCGTATTTCCCGTTCCATTACCATCACTTTTTTTTTAGCTTTTAGGTGTGAATACAGTAATAGTAGTACCTTTTTCCCAGCTAAAAAAATTCAGAAAAGGGAGCTGCTTAACTGTAACAAACAAAAAAAAAA] [+] EMBL BI812426 [CCACGCCCACAACATGCCCGCAAGGCCGTTCGGCGTGTTCCCCACCGAGGTCTCCGCCTGCGAGCCCGTCCGCCCGGCGTCCGCATTGGGCGCGCCTCGGCCCGAGGACCTCTGGTGCATCAAGCGTCTCGCCGACGGCTACAACCACGGCCCGCTCGGCGACTGGACCAAGGCGCCGCCGGCCGCTCCATCTTCGTCGACCCAAGAGAGTTTTAGGAGGATTTTAGCTTTCCGTTTTTCCCTAGGCCTTTAGGGTTTTTTCCCGACCGTCCGATCTCCTCCCGCACATCCGACGGCGGGCAGTCGCTCCCTAGAACCAGCAGCGTCACCCCAAACATGTGTCACTCTTCATCTCGTCGTATTTCCCGTTCCATTACCATCACTTTTTTTTTAGCTTTTAGGTGTGAATACAGTAATAGTAGTACCTTTTTCCCAGCTAAAAAAATTCAGAAAAGGGAGCTGCTTAACTGTAACAAACAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2010#0 ------------------------------------------------------------ consensus_2010#1 CCACGCCCACAACATGCCCGCAAGGCCGTTCGGCGTGTTCCCCACCGAGGTCTCCGCCTG 60 consensus_2010#0 ------------------GTTCCCCCTTGGCGGCCCTCG-CCCGAGACTCT---GTGCAT 38 consensus_2010#1 CGAGCCCGTCCGCCCGGCGTCCGCATTGGGCGCGCCTCGGCCCGAGGACCTCTGGTGCAT 120 ** * * * **** ***** ****** ** ****** consensus_2010#0 CAAGCGTCTCGCCGACGGCTACAACCACGGCCCGCTCGGCGACTGGACCAAGGCGCC-CC 97 consensus_2010#1 CAAGCGTCTCGCCGACGGCTACAACCACGGCCCGCTCGGCGACTGGACCAAGGCGCCGCC 180 ********************************************************* ** consensus_2010#0 GGCCGCTCCATCTTCGTCGACCCAAGAGAGTTTTAGGAGGATTTTAGCTTTCCGTTTTTC 157 consensus_2010#1 GGCCGCTCCATCTTCGTCGACCCAAGAGAGTTTTAGGAGGATTTTAGCTTTCCGTTTTTC 240 ************************************************************ consensus_2010#0 CCTAGGCCTTTAGGGTTTTTTCCCGACCGTCCGATCTCCTCCCGCACATCCGACGGCGGG 217 consensus_2010#1 CCTAGGCCTTTAGGGTTTTTTCCCGACCGTCCGATCTCCTCCCGCACATCCGACGGCGGG 300 ************************************************************ consensus_2010#0 CAGTCGCTCCCTAGAACCAGCAGCGTCACCCCAAACATGTGTCACTCTTCATCTCGTCGT 277 consensus_2010#1 CAGTCGCTCCCTAGAACCAGCAGCGTCACCCCAAACATGTGTCACTCTTCATCTCGTCGT 360 ************************************************************ consensus_2010#0 ATTTCCCGTTCCATTGACCATCACTTTTTTTTTTAGCTTTTAGGTGTGAATACAGTAATA 337 consensus_2010#1 ATTTCCCGTTCCATT-ACCATCACTTTTTTTTT-AGCTTTTAGGTGTGAATACAGTAATA 418 *************** ***************** ************************** consensus_2010#0 GTAGTACCTTTTTCCCAGCTAAAAAAATTCAGAAAAGGGAGCTGCTTAACTGTAACTCGT 397 consensus_2010#1 GTAGTACCTTTTTCCCAGCTAAAAAAATTCAGAAAAGGGAGCTGCTTAACTGTAACAAAC 478 ******************************************************** consensus_2010#0 TTGCTACTGCGTACTTTTGCCTCATTGCCGTTTACAAACATCCTGTGCGCACAGTACTTG 457 consensus_2010#1 AAAAAAAAAA-------------------------------------------------- 488 * consensus_2010#0 CATGTGTATCGAAAGGCATCGACATGGAATAGACCTGAAGAGGATACATGTCTGTTGGCT 517 consensus_2010#1 ------------------------------------------------------------ consensus_2010#0 GTTCCAACGCAACCGGCTTATTACCGGGAAAAA 550 consensus_2010#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||