cluster # 2022

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Oryza sativa
cluster # 2022 cluster # 2022 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2022#0 length = 262 sequences # 1

consensus_2022#1 length = 190 sequences # 1

consensusID : consensus_2022#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 262
fasta sequence

                              [ACTCACTGCTTGCTGGCCTGCCTGCGCAACACACCTGGTGGCTGCTGCAGCCCTGGGCTGGCAGCTGGCCTGTCTGTGTGCCAGCATCTATGTGATGTGTCTAGTCAGCGCAACATCATATACAACATTGCAGCACACTATATGCACAGTGCGCTGCACAGCAGTGCAGCACACAGTGTATCCCCATTGGTTGCACACTGTGCGCACGTTTGACCACCATTGGTGGTCACATGCCTGCATACCGTTCCAGTGTGCACTGTGT]

[+] EMBL CB966061             [ACTCACTGCTTGCTGGCCTGCCTGCGCAACACACCTGGTGGCTGCTGCAGCCCTGGGCTGGCAGCTGGCCTGTCTGTGTGCCAGCATCTATGTGATGTGTCTAGTCAGCGCAACATCATATACAACATTGCAGCACACTATATGCACAGTGCGCTGCACAGCAGTGCAGCACACAGTGTATCCCCATTGGTTGCACACTGTGCGCACGTTTGACCACCATTGGTGGTCACATGCCTGCATACCGTTCCAGTGTGCACTGTGT]




>consensus_2022#0
ACTCACTGCTTGCTGGCCTGCCTGCGCAACACACCTGGTGGCTGCTGCAGCCCTGGGCTG
GCAGCTGGCCTGTCTGTGTGCCAGCATCTATGTGATGTGTCTAGTCAGCGCAACATCATA
TACAACATTGCAGCACACTATATGCACAGTGCGCTGCACAGCAGTGCAGCACACAGTGTA
TCCCCATTGGTTGCACACTGTGCGCACGTTTGACCACCATTGGTGGTCACATGCCTGCAT
ACCGTTCCAGTGTGCACTGTGT

consensusID : consensus_2022#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 190
fasta sequence

                              [CAATAAGCTTGCGGTCTTTCCTGCAAACACCTGGTGGCTGCTGCAGCCCTGTTGCTGGCAGCTGTGCTGTCTGTGATGCCAGCATCCTNTGTGATGTGTCAGATCAGCCAACATCATTCCAACATTGCAGCACACATATATGCACAGTGCCCTGCACAGCAGTGCAGCACACAGTGTTCCCCATTGGTTG]

[+] EMBL BU672919             [CAATAAGCTTGCGGTCTTTCCTGCAAACACCTGGTGGCTGCTGCAGCCCTGTTGCTGGCAGCTGTGCTGTCTGTGATGCCAGCATCCTNTGTGATGTGTCAGATCAGCCAACATCATTCCAACATTGCAGCACACATATATGCACAGTGCCCTGCACAGCAGTGCAGCACACAGTGTTCCCCATTGGTTG]




>consensus_2022#1
CAATAAGCTTGCGGTCTTTCCTGCAAACACCTGGTGGCTGCTGCAGCCCTGTTGCTGGCA
GCTGTGCTGTCTGTGATGCCAGCATCCTNTGTGATGTGTCAGATCAGCCAACATCATTCC
AACATTGCAGCACACATATATGCACAGTGCCCTGCACAGCAGTGCAGCACACAGTGTTCC
CCATTGGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2022#0      ACTCACTGCTTGCTGGCCTGCCTGCGCAACACACCTGGTGGCTGCTGCAGCCCTGG-GCT 59
consensus_2022#1      -CAATAAGCTTGCGGTCTTTCCTGC---AAACACCTGGTGGCTGCTGCAGCCCTGTTGCT 56
                       *     ****** * * * *****   * *************************  ***

consensus_2022#0      GGCAGCTGGCCTGTCTGTG-TGCCAGCATC-TATGTGATGTGTCTAGTCAGCGCAACATC 117
consensus_2022#1      GGCAGCTGTGCTGTCTGTGATGCCAGCATCCTNTGTGATGTGTCAGATCAGC-CAACATC 115
                      ********  ********* ********** * ***********   ***** *******

consensus_2022#0      ATATACAACATTGCAGCACAC-TATATGCACAGTGCGCTGCACAGCAGTGCAGCACACAG 176
consensus_2022#1      AT-TCCAACATTGCAGCACACATATATGCACAGTGCCCTGCACAGCAGTGCAGCACACAG 174
                      ** * **************** ************** ***********************

consensus_2022#0      TGTATCCCCATTGGTTGCACACTGTGCGCACGTTTGACCACCATTGGTGGTCACATGCCT 236
consensus_2022#1      TGT-TCCCCATTGGTTG------------------------------------------- 190
                      *** *************                                           

consensus_2022#0      GCATACCGTTCCAGTGTGCACTGTGT 262
consensus_2022#1      --------------------------