These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2025#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence [GCGGAGGCGAAAAGTGGCGCATTATTTTATCCGAGCGAGCGAGTCAGACGCGCACGCGGAGCAGCCGCCTCCGCCGCCGCCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGAGGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGGGTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGAGCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGGGGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGAGGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTCCCTTGAACATAAGGGGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGATGTGCGGAATGATGATGGTCTTCGGAGGGAACTCGCGTCCTGTACAGGTCTTCCCACTGCTCATTAAGAAGTTTTCACATGAAGAGCAAGCTGATTTAGTCTGGCAATTCTTATGCAGCATCCCTGTCAATATGATGGCAGAGTTCCTTCCATGGCTTGCTACTTCTGTTTCATCTGATGAGCACCAAGATATTCTTAACTGCTTACATAAAATAGTTCCCGACGAGAAACTTCTCCAACAGGTTGTATTTGCGTGGATTGGAGGGGAAGCAGTGAAAACAATATCACATG] [+] EMBL CB677228 [GCGGAGGCGAAAAGTGGCGCATTATTTTATCCGAGCGAGCGAGTCAGACGCGCACGCGGAGCAGCCGCCTCCGCCGCCGCCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGAGGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGGGTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGAGCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGGGGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGAGGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTCCCTTGAACATAAGGGGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGATGTGCGGAATGATGATGGTCTTCGGAGGGAACTCGCGTCCTGTACAGGTCTTCCCACTGCTCATTAAGAAGTTTTCACATGAAGAGCAAGCTGATTTAGTCTGGCAATTCTTATGCAGCATCCCTGTCAATATGATGGCAGAGTTCCTTCCATGGCTTGCTACTTCTGTTTCATCTGATGAGCACCAAGATATTCTTAACTGCTTACATAAAATAGTTCCCGACGAGAAACTTCTCCAACAGGTTGTATTTGCGTGGATTGGAGGGGAAGCAGTGAAAACAATATCACATG] consensusID : consensus_2025#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [CCGCCTCCGCCGCCGGCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGAGGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGGGTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGAGCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGGGGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGAGGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTCCCTTGAACATAAGGNGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGATGTGCGGAATGATGATGGTCTTTCGAGGGAACTCGCGTCCTGTACAGGTGCAAATTCAACGTTTATAACCCAACATATGTCCAAGGAAGGAAAGCAGGTCTTCCACTGCTAATAAGAAGTTNTCACATGAAGAGCAGGCCT] [+] EMBL BE040783 [CCGCCTCCGCCGCCGGCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGAGGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGGGTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGAGCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGGGGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGAGGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTCCCTTGAACATAAGGNGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGATGTGCGGAATGATGATGGTCTTTCGAGGGAACTCGCGTCCTGTACAGGTGCAAATTCAACGTTTATAACCCAACATATGTCCAAGGAAGGAAAGCAGGTCTTCCACTGCTAATAAGAAGTTNTCACATGAAGAGCAGGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2025#0 GCGGAGGCGAAAAGTGGCGCATTATTTTATCCGAGCGAGCGAGTCAGACGCGCACGCGGA 60 consensus_2025#1 ------------------------------------------------------------ consensus_2025#0 GCAGCCGCCTCCGCCGCCGCCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGA 120 consensus_2025#1 ----CCGCCTCCGCCGCCGGCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGA 56 *************** **************************************** consensus_2025#0 GGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGG 180 consensus_2025#1 GGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGG 116 ************************************************************ consensus_2025#0 GTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGA 240 consensus_2025#1 GTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGA 176 ************************************************************ consensus_2025#0 GCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGG 300 consensus_2025#1 GCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGG 236 ************************************************************ consensus_2025#0 GGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGA 360 consensus_2025#1 GGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGA 296 ************************************************************ consensus_2025#0 GGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTC 420 consensus_2025#1 GGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTC 356 ************************************************************ consensus_2025#0 CCTTGAACATAAGGGGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGA 480 consensus_2025#1 CCTTGAACATAAGGNGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGA 416 ************** ********************************************* consensus_2025#0 TGTGCGGAATGATGATGGTCTTCGGAGGGAACTCGCGTCCTGTACAGGTCTTCCCACTGC 540 consensus_2025#1 TGTGCGGAATGATGATGGTCTTTCGAGGGAACTCGCGTCCTGTACAGGTG--CAAATTCA 474 ********************** ************************* * * * consensus_2025#0 TCATTAAGAAGTTTTCACATGAA-GAGCAAGCTGATTTAGTCTGGCAATTCTTATGCAGC 599 consensus_2025#1 ACGTTTATAACCCAACATATGTCCAAGGAAGGAAAGCAGGTCTTCCACTGCTAATAAGAA 534 * ** * ** ** *** ** *** * **** ** * ** ** consensus_2025#0 ATCCCTGTCAATATGATGGCAGAGTTCCTTCCATGGCTTGCTACTTCTGTTTCATCTGAT 659 consensus_2025#1 GT---TNTCACATGAAGAGCAGGCCT---------------------------------- 557 * * *** * **** * consensus_2025#0 GAGCACCAAGATATTCTTAACTGCTTACATAAAATAGTTCCCGACGAGAAACTTCTCCAA 719 consensus_2025#1 ------------------------------------------------------------ consensus_2025#0 CAGGTTGTATTTGCGTGGATTGGAGGGGAAGCAGTGAAAACAATATCACATG 771 consensus_2025#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||