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Oryza sativa
cluster # 2025 cluster # 2025       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2025#0 length = 771 sequences # 1  
consensus_2025#1 length = 557 sequences # 1  

consensusID : consensus_2025#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 771
fasta sequence
                              [GCGGAGGCGAAAAGTGGCGCATTATTTTATCCGAGCGAGCGAGTCAGACGCGCACGCGGAGCAGCCGCCTCCGCCGCCGCCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGAGGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGGGTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGAGCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGGGGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGAGGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTCCCTTGAACATAAGGGGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGATGTGCGGAATGATGATGGTCTTCGGAGGGAACTCGCGTCCTGTACAGGTCTTCCCACTGCTCATTAAGAAGTTTTCACATGAAGAGCAAGCTGATTTAGTCTGGCAATTCTTATGCAGCATCCCTGTCAATATGATGGCAGAGTTCCTTCCATGGCTTGCTACTTCTGTTTCATCTGATGAGCACCAAGATATTCTTAACTGCTTACATAAAATAGTTCCCGACGAGAAACTTCTCCAACAGGTTGTATTTGCGTGGATTGGAGGGGAAGCAGTGAAAACAATATCACATG]

[+] EMBL CB677228             [GCGGAGGCGAAAAGTGGCGCATTATTTTATCCGAGCGAGCGAGTCAGACGCGCACGCGGAGCAGCCGCCTCCGCCGCCGCCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGAGGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGGGTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGAGCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGGGGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGAGGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTCCCTTGAACATAAGGGGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGATGTGCGGAATGATGATGGTCTTCGGAGGGAACTCGCGTCCTGTACAGGTCTTCCCACTGCTCATTAAGAAGTTTTCACATGAAGAGCAAGCTGATTTAGTCTGGCAATTCTTATGCAGCATCCCTGTCAATATGATGGCAGAGTTCCTTCCATGGCTTGCTACTTCTGTTTCATCTGATGAGCACCAAGATATTCTTAACTGCTTACATAAAATAGTTCCCGACGAGAAACTTCTCCAACAGGTTGTATTTGCGTGGATTGGAGGGGAAGCAGTGAAAACAATATCACATG]


>consensus_2025#0 GCGGAGGCGAAAAGTGGCGCATTATTTTATCCGAGCGAGCGAGTCAGACGCGCACGCGGA GCAGCCGCCTCCGCCGCCGCCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGA GGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGG GTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGA GCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGG GGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGA GGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTC CCTTGAACATAAGGGGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGA TGTGCGGAATGATGATGGTCTTCGGAGGGAACTCGCGTCCTGTACAGGTCTTCCCACTGC TCATTAAGAAGTTTTCACATGAAGAGCAAGCTGATTTAGTCTGGCAATTCTTATGCAGCA TCCCTGTCAATATGATGGCAGAGTTCCTTCCATGGCTTGCTACTTCTGTTTCATCTGATG AGCACCAAGATATTCTTAACTGCTTACATAAAATAGTTCCCGACGAGAAACTTCTCCAAC AGGTTGTATTTGCGTGGATTGGAGGGGAAGCAGTGAAAACAATATCACATG



consensusID : consensus_2025#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence
                              [CCGCCTCCGCCGCCGGCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGAGGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGGGTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGAGCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGGGGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGAGGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTCCCTTGAACATAAGGNGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGATGTGCGGAATGATGATGGTCTTTCGAGGGAACTCGCGTCCTGTACAGGTGCAAATTCAACGTTTATAACCCAACATATGTCCAAGGAAGGAAAGCAGGTCTTCCACTGCTAATAAGAAGTTNTCACATGAAGAGCAGGCCT]

[+] EMBL BE040783             [CCGCCTCCGCCGCCGGCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGAGGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGGGTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGAGCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGGGGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGAGGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTCCCTTGAACATAAGGNGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGATGTGCGGAATGATGATGGTCTTTCGAGGGAACTCGCGTCCTGTACAGGTGCAAATTCAACGTTTATAACCCAACATATGTCCAAGGAAGGAAAGCAGGTCTTCCACTGCTAATAAGAAGTTNTCACATGAAGAGCAGGCCT]


>consensus_2025#1 CCGCCTCCGCCGCCGGCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGAGGGC TCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGGGTCG GCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGAGCTG GAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGGGGAG CTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGAGGAC GCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTCCCTT GAACATAAGGNGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGATGTG CGGAATGATGATGGTCTTTCGAGGGAACTCGCGTCCTGTACAGGTGCAAATTCAACGTTT ATAACCCAACATATGTCCAAGGAAGGAAAGCAGGTCTTCCACTGCTAATAAGAAGTTNTC ACATGAAGAGCAGGCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2025#0      GCGGAGGCGAAAAGTGGCGCATTATTTTATCCGAGCGAGCGAGTCAGACGCGCACGCGGA 60
consensus_2025#1      ------------------------------------------------------------
                                                                                  

consensus_2025#0      GCAGCCGCCTCCGCCGCCGCCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGA 120
consensus_2025#1      ----CCGCCTCCGCCGCCGGCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGA 56
                          *************** ****************************************

consensus_2025#0      GGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGG 180
consensus_2025#1      GGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGG 116
                      ************************************************************

consensus_2025#0      GTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGA 240
consensus_2025#1      GTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGA 176
                      ************************************************************

consensus_2025#0      GCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGG 300
consensus_2025#1      GCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGG 236
                      ************************************************************

consensus_2025#0      GGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGA 360
consensus_2025#1      GGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGA 296
                      ************************************************************

consensus_2025#0      GGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTC 420
consensus_2025#1      GGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTC 356
                      ************************************************************

consensus_2025#0      CCTTGAACATAAGGGGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGA 480
consensus_2025#1      CCTTGAACATAAGGNGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGA 416
                      ************** *********************************************

consensus_2025#0      TGTGCGGAATGATGATGGTCTTCGGAGGGAACTCGCGTCCTGTACAGGTCTTCCCACTGC 540
consensus_2025#1      TGTGCGGAATGATGATGGTCTTTCGAGGGAACTCGCGTCCTGTACAGGTG--CAAATTCA 474
                      **********************  *************************   *  * *  

consensus_2025#0      TCATTAAGAAGTTTTCACATGAA-GAGCAAGCTGATTTAGTCTGGCAATTCTTATGCAGC 599
consensus_2025#1      ACGTTTATAACCCAACATATGTCCAAGGAAGGAAAGCAGGTCTTCCACTGCTAATAAGAA 534
                       * ** * **     ** ***    ** ***   *    ****  ** * ** **     

consensus_2025#0      ATCCCTGTCAATATGATGGCAGAGTTCCTTCCATGGCTTGCTACTTCTGTTTCATCTGAT 659
consensus_2025#1      GT---TNTCACATGAAGAGCAGGCCT---------------------------------- 557
                       *   * ***     *  ****   *                                  

consensus_2025#0      GAGCACCAAGATATTCTTAACTGCTTACATAAAATAGTTCCCGACGAGAAACTTCTCCAA 719
consensus_2025#1      ------------------------------------------------------------
                                                                                  

consensus_2025#0      CAGGTTGTATTTGCGTGGATTGGAGGGGAAGCAGTGAAAACAATATCACATG 771
consensus_2025#1      ----------------------------------------------------
                                                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)