These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [CTTCGAAACAGTTCATCGATGTCATACATGAAAACTGGAAAAAAAGATGGCAGCAGGCAACGCCGATGTATACAACAGAAGAGCTAGATCGTCTTCAACTTCAAGTGAAAATATGTATAGAAATGGCGTTACAGTGTGTGGAGCCTGAGCCACTGAAAAGGCCTACCATGCTGGAGGTTGTCAGCAGACTAGATGATATGTTCCAGAACAGGTCATCACCGCCGTTGTTCTCAACTTCTTCAACGATCGATCCAGCGTCACGCCGATCTCAGGTTTCCGCTGTTGACTCTGTCCAATGCCGATTTGGCGCCGATATTTCGCGGCCGTGGCTTCAAACTTTCAGTAGCAGAGGTGATTTACCTCTTGCCGATTGCCGTGACTTTTGTCAACGGTGCCTTCCGCACGACAGCGGCAATTGTTTACCTTGGCGGTCGTCTCTCTGCTTGCCTCCTTTTTCTAGTGAACGGGCACGGAATACGTACATGACCGCAGGTCGCTCTCTCCAGTCACTTCAGTCTTTTAGCAATTTTATTGGAAGCACCTGCAAATCGGACATCCGAATTTTGTTGTAAAAATCGAGTGTTGTTTCAGTACTTGTAAAAAGAATGTTTCATCACTAGCTTACACATGTTTCAGACTATCACTACTAGGAAAATG] [+] EMBL CA767462 [CTTCGAAACAGTTCATCGATGTCATACATGAAAACTGGAAAAAAAGATGGCAGCAGGCAACGCCGATGTATACAACAGAAGAGCTAGATCGTCTTCAACTTCAAGTGAAAATATGTATAGAAATGGCGTTACAGTGTGTGGAGCCTGAGCCACTGAAAAGGCCTACCATGCTGGAGGTTGTCAGCAGACTAGATGATATGTTCCAGAACAGGTCATCACCGCCGTTGTTCTCAACTTCTTCAACGATCGATCCAGCGTCACGCCGATCTCAGGTTTCCGCTGTTGACTCTGTCCAATGCCGATTTGGCGCCGATATTTCGCGGCCGTGGCTTCAAACTTTCAGTAGCAGAGGTGATTTACCTCTTGCCGATTGCCGTGACTTTTGTCAACGGTGCCTTCCGCACGACAGCGGCAATTGTTTACCTTGGCGGTCGTCTCTCTGCTTGCCTCCTTTTTCTAGTGAACGGGCACGGAATACGTACATGACCGCAGGTCGCTCTCTCCAGTCACTTCAGTCTTTTAGCAATTTTATTGGAAGCACCTGCAAATCGGACATCCGAATTTTGTTGTAAAAATCGAGTGTTGTTTCAGTACTTGTAAAAAGAATGTTTCATCACTAGCTTACACATGTTTCAGACTATCACTACTAGGAAAATG] consensusID : consensus_2026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [CAACTATTTCTAAGGTTTATTTCTATATAGACTCTGATCTTTTTTCTCCGATTAATGTGAGAATTTCTAGACCTGAAACCAACTGGAGGCTTTTTTTCTATTCCTTTAATAAGTTAATAGATGTTTAATCGTCATAGTAATAATAAATTATAATGCTAATAATAAAAAGATCCATTTTCAAAAAAAGATCAAAGACAGACTGACACAGATAGATAGTACTACTCCAGATTGAATTGTCCTTTCTTTCTTTCTTCCACTTTTTTGTTTATTGGATTGATCCTTCATACACGTTTTAACTGTTTAATACATACATGCAGGTCGCTCTCTCCAGTCACTTCAATCTTTTAGCCATTTTATTGGAAGCACCTGCAATCGGACATCCGAATTTTGTTGTAAAAATCGAGTGTTGTTTCAGTACTTGTAAAAAGAATGTTTCATCACTAGCTTACACATATTTCAGACTATCACTACTAGGAAAACGGTTTTTTAAGCCAAAAAAAAAA] [+] EMBL BI812305 [CAACTATTTCTAAGGTTTATTTCTATATAGACTCTGATCTTTTTTCTCCGATTAATGTGAGAATTTCTAGACCTGAAACCAACTGGAGGCTTTTTTTCTATTCCTTTAATAAGTTAATAGATGTTTAATCGTCATAGTAATAATAAATTATAATGCTAATAATAAAAAGATCCATTTTCAAAAAAAGATCAAAGACAGACTGACACAGATAGATAGTACTACTCCAGATTGAATTGTCCTTTCTTTCTTTCTTCCACTTTTTTGTTTATTGGATTGATCCTTCATACACGTTTTAACTGTTTAATACATACATGCAGGTCGCTCTCTCCAGTCACTTCAATCTTTTAGCCATTTTATTGGAAGCACCTGCAATCGGACATCCGAATTTTGTTGTAAAAATCGAGTGTTGTTTCAGTACTTGTAAAAAGAATGTTTCATCACTAGCTTACACATATTTCAGACTATCACTACTAGGAAAACGGTTTTTTAAGCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2026#0 CTTCGAAACAGTTCATCGATGTCATACATGAAAACTGGAAAAAAAGATGGCAGCAGGCAA 60 consensus_2026#1 ------------------------------------------------------------ consensus_2026#0 CGCCGATGTATACAACAGAAGAGCTAGATCGTCTTCAACTTCAAGTGAAAATATGTATAG 120 consensus_2026#1 ------------------------------------------------------------ consensus_2026#0 AAATGGCGTTACAGTGTGTGGAGCCTGAGCCACTGAAAAGGCCTACCATGCTGGAGGTTG 180 consensus_2026#1 ------------------------------------------------------------ consensus_2026#0 TCAGCAGACTAGATGATATGTTCCAGAACAGGTCATCACCGCCGTTGTTCTCAACTTCTT 240 consensus_2026#1 -CAACTATTTCTAAGGTTTATTTCTATATAGACTCTGATCTT--TTTTCTCCGATTAATG 57 ** * * * * * * ** * * ** * * * ** * * * * * consensus_2026#0 CAACGATCGATCCAG-CGTCACGCCGATCTCAGGTTTCCGCTGTTGACTCTGTCCAATGC 299 consensus_2026#1 TGAGAATT--TCTAGACCTGAAACCAACTGGAGGCTTTT--TTTCTATTCCTTTAATAAG 113 * ** ** ** * * * ** * *** ** * * * ** * * consensus_2026#0 CGATTTGGCGCCGATATTTCGCGGCCGTGGCT--TCAAACTTTCAGTAGCAGAGGTGATT 357 consensus_2026#1 TTAATAGATGTTTAATCGTCATAGTAATAATAAATTATAATGCTAATAATAAAAA-GATC 172 * * * * * ** * * * * * * * ** * * *** consensus_2026#0 TACCTCTTGCCGATTGCCG---------TGACTTTTGTCAACGGTGCC-TTCCGCACGAC 407 consensus_2026#1 CATTTTCAAAAAAAGATCAAAGACAGACTGACACAGATAGATAGTACTACTCCAGATTGA 232 * * * * **** * * ** * *** * consensus_2026#0 AGCGGCAATTGTTTACCT-TGGCGGTCGTCTCTCTGCTTGCCTCCTTTTTCTAGTGAACG 466 consensus_2026#1 ATTGTCCTTTCTTTCTTTCTTCCACTTTTTTGTTTATTGGATTGATCCTTCATACACGTT 292 * * * ** *** * * * * * * * * * * * * *** consensus_2026#0 GGCACGGAATACGTACATGACCGCAGGTCGCTCTCTCCAGTCACTTCAGTCTTTTAGCAA 526 consensus_2026#1 TTAACTGTTTA-ATACATACATGCAGGTCGCTCTCTCCAGTCACTTCAATCTTTTAGCCA 351 ** * ** ***** ************************** ********* * consensus_2026#0 TTTTATTGGAAGCACCTGCAAATCGGACATCCGAATTTTGTTGTAAAAATCGAGTGTTGT 586 consensus_2026#1 TTTTATTGGAAGCACCTGCAA-TCGGACATCCGAATTTTGTTGTAAAAATCGAGTGTTGT 410 ********************* ************************************** consensus_2026#0 TTCAGTACTTGTAAAAAGAATGTTTCATCACTAGCTTACACATGTTTCAGACTATCACTA 646 consensus_2026#1 TTCAGTACTTGTAAAAAGAATGTTTCATCACTAGCTTACACATATTTCAGACTATCACTA 470 ******************************************* **************** consensus_2026#0 CTAGGAAAATG---------------------- 657 consensus_2026#1 CTAGGAAAACGGTTTTTTAAGCCAAAAAAAAAA 503 ********* * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||