cluster # 2041

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Oryza sativa
cluster # 2041 cluster # 2041 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2041#0 length = 343 sequences # 1

consensus_2041#1 length = 84 sequences # 1

consensusID : consensus_2041#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [GAGTAGATGTAACATGTAAGAGCCTAGATCACACAAGGCACACCAGGGCATTAGTTTAGATGTGTAAGTTAAGAGCGTTGGCAATGTGATCTGTATCATTGTAGAATTGTCAGATTACTGAAAGAAATCATTGACAAATAATGGTAATTATCGGAGCGATCTGCTGACTGAAGCAGATCGCGTATCGCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCCTTTCTTTAAAAAGGGGAAATTCCGGGCCCTAAAATT]

[+] EMBL CF332973             [GAGTAGATGTAACATGTAAGAGCCTAGATCACACAAGGCACACCAGGGCATTAGTTTAGATGTGTAAGTTAAGAGCGTTGGCAATGTGATCTGTATCATTGTAGAATTGTCAGATTACTGAAAGAAATCATTGACAAATAATGGTAATTATCGGAGCGATCTGCTGACTGAAGCAGATCGCGTATCGCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCCTTTCTTTAAAAAGGGGAAATTCCGGGCCCTAAAATT]




>consensus_2041#0
GAGTAGATGTAACATGTAAGAGCCTAGATCACACAAGGCACACCAGGGCATTAGTTTAGA
TGTGTAAGTTAAGAGCGTTGGCAATGTGATCTGTATCATTGTAGAATTGTCAGATTACTG
AAAGAAATCATTGACAAATAATGGTAATTATCGGAGCGATCTGCTGACTGAAGCAGATCG
CGTATCGCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTT
TTTCCCCTTTCTTTAAAAAGGGGAAATTCCGGGCCCTAAAATT

consensusID : consensus_2041#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 84
fasta sequence

                              [TTGTAGATTGTCCATTACTGAAAGAAATCATTGAACAAATAATGGTAATTATCGGAGCCGATCTGCTGACTGAAANCAANTCGC]

[+] EMBL BE228764             [TTGTAGATTGTCCATTACTGAAAGAAATCATTGAACAAATAATGGTAATTATCGGAGCCGATCTGCTGACTGAAANCAANTCGC]




>consensus_2041#1
TTGTAGATTGTCCATTACTGAAAGAAATCATTGAACAAATAATGGTAATTATCGGAGCCG
ATCTGCTGACTGAAANCAANTCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2041#0      GAGTAGATGTAACATGTAAGAGCCTAGATCACACAAGGCACACCAGGGCATTAGTTTAGA 60
consensus_2041#1      ------------------------------------------------------------
                                                                                  

consensus_2041#0      TGTGTAAGTTAAGAGCGTTGGCAATGTGATCTGTATCATTGTAGAATTGTCAGATTACTG 120
consensus_2041#1      --------------------------------------TTGTAGA-TTGTCC-ATTACTG 20
                                                            ******* *****  *******

consensus_2041#0      AAAGAAATCATTGA-CAAATAATGGTAATTATCGGAGC-GATCTGCTGACTGAA-GCAGA 177
consensus_2041#1      AAAGAAATCATTGAACAAATAATGGTAATTATCGGAGCCGATCTGCTGACTGAAANCAAN 80
                      ************** *********************** ***************  **  

consensus_2041#0      TCGCGTATCGCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 237
consensus_2041#1      TCGC-------------------------------------------------------- 84
                      ****                                                        

consensus_2041#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCT 297
consensus_2041#1      ------------------------------------------------------------
                                                                                  

consensus_2041#0      TTTTTTCCCCTTTCTTTAAAAAGGGGAAATTCCGGGCCCTAAAATT 343
consensus_2041#1      ----------------------------------------------