These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2052#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 831 fasta sequence [CTTTTTTTTAGCCCGGGTTTGCAAAACAATGTGATCTTGCTGGCTGTTTCTGCCAGTATTTACAGCCACCTTGGTACAGAGGAACCAAATTGCAGATTTGCAAATATGGAATACTGTACAGTATGTTGGCAGGAGATGTACAACATCGTTCTGAACATATAACAGTTTGATGAAACACAGTTCCCTAGTAGGAGCAGAGGCTGGGGAGTTTCCCTTCCATCATAAAAGAAAAAAAAAAGGAACACATAGTTCATGGCTCACAACAAAACTGAGGCATCTGACAGTACTTTCTGAAGTACAAAATTGCCTCTCCATCAATCGCCCATAGAGGGCAAACAAGTCAAATATATATATATATATATATTTTTTCTCACTCAAGGTATGTCATTCATTCACTGTGTAATCTCCTTTTTCTCGTTGTTGTAACCGGCAGCTCTCCCTGTTCTGCCTGTCAAGACCGAGTCTGGTGCTGGACCCTCGTATTCTCCGGTGAGACCACGGTAGGATCGTGCCTTGAGATAGTCGATCGCAGACTTTGCTCCTCCTTGGTAAAGAACTGCATCATTATTCTGATTTTTTATACTTAGCGCCTTCTCTGTTACCTCAGCAAGTGCAAGCGATGTCTCTGGCTGTTCCTCGTTATCTTCAAGGCAATTATCTTCCACATAGCCACCTTTGATAAAGGAAAATCTTGCTTCTTCAGTTGTGCTTGAAATTTCTGGTTTATCTGTAGTGATCAAATCCTTGAAATCTAGAAGATACTCTCCTGTCCATTCCCTTCCCCTGCTAAAAGCTAATACAGCTTCNAAAGGTGTAATGACTGGAGCTAAA] [+] EMBL CB634959 [CTTTTTTTTAGCCCGGGTTTGCAAAACAATGTGATCTTGCTGGCTGTTTCTGCCAGTATTTACAGCCACCTTGGTACAGAGGAACCAAATTGCAGATTTGCAAATATGGAATACTGTACAGTATGTTGGCAGGAGATGTACAACATCGTTCTGAACATATAACAGTTTGATGAAACACAGTTCCCTAGTAGGAGCAGAGGCTGGGGAGTTTCCCTTCCATCATAAAAGAAAAAAAAAAGGAACACATAGTTCATGGCTCACAACAAAACTGAGGCATCTGACAGTACTTTCTGAAGTACAAAATTGCCTCTCCATCAATCGCCCATAGAGGGCAAACAAGTCAAATATATATATATATATATATTTTTTCTCACTCAAGGTATGTCATTCATTCACTGTGTAATCTCCTTTTTCTCGTTGTTGTAACCGGCAGCTCTCCCTGTTCTGCCTGTCAAGACCGAGTCTGGTGCTGGACCCTCGTATTCTCCGGTGAGACCACGGTAGGATCGTGCCTTGAGATAGTCGATCGCAGACTTTGCTCCTCCTTGGTAAAGAACTGCATCATTATTCTGATTTTTTATACTTAGCGCCTTCTCTGTTACCTCAGCAAGTGCAAGCGATGTCTCTGGCTGTTCCTCGTTATCTTCAAGGCAATTATCTTCCACATAGCCACCTTTGATAAAGGAAAATCTTGCTTCTTCAGTTGTGCTTGAAATTTCTGGTTTATCTGTAGTGATCAAATCCTTGAAATCTAGAAGATACTCTCCTGTCCATTCCCTTCCCCTGCTAAAAGCTAATACAGCTTCNAAAGGTGTAATGACTGGAGCTAAA] consensusID : consensus_2052#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [ATCAGCATATGGAGCATCTAGCCGGCTTTGCAAAACAATGTGATCTTGCTGGCTGTTTCTGCCAGTATTTACAGCCCACCTGTGGTCACCAGCAGGCACACCCAACATTGCCAGCATTTTGCCAACATCATGGCACATCACTGGTCACCAGTCATGTCTGGCCCAGGCAGCATGTTACAACCATCGGTTCTGCACACATCATCAACCAGTTTGCATGCAAAACACAGGTTCCCTCAGTCAGGCAGCAGCAGGCTGGGGCAGTTTCCCTTTCCCCATCATAACACAAGCAACACACAACACACACNGGCACACCACCATTCAGTTCCATGGGCTCCCACACACCACACACACGTAGCAAGGCCTATCTGCACCAGTCCACTATTCTAGCAAAGTCACCAAACACATTGGCCTCTCCCCATCCAAATCGCCCCCATAAGCAGGGGCGCACACACCAAAGTCCAACAATCATCATCATCATCATCA] [+] EMBL BU667077 [ATCAGCATATGGAGCATCTAGCCGGCTTTGCAAAACAATGTGATCTTGCTGGCTGTTTCTGCCAGTATTTACAGCCCACCTGTGGTCACCAGCAGGCACACCCAACATTGCCAGCATTTTGCCAACATCATGGCACATCACTGGTCACCAGTCATGTCTGGCCCAGGCAGCATGTTACAACCATCGGTTCTGCACACATCATCAACCAGTTTGCATGCAAAACACAGGTTCCCTCAGTCAGGCAGCAGCAGGCTGGGGCAGTTTCCCTTTCCCCATCATAACACAAGCAACACACAACACACACNGGCACACCACCATTCAGTTCCATGGGCTCCCACACACCACACACACGTAGCAAGGCCTATCTGCACCAGTCCACTATTCTAGCAAAGTCACCAAACACATTGGCCTCTCCCCATCCAAATCGCCCCCATAAGCAGGGGCGCACACACCAAAGTCCAACAATCATCATCATCATCATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2052#0 ----------CTTTTTTTTAGCCCGGGTTTGCAAAACAATGTGATCTTGCTGGCTGTTTC 50 consensus_2052#1 ATCAGCATATGGAGCATCTAGCC-GGCTTTGCAAAACAATGTGATCTTGCTGGCTGTTTC 59 * ***** ** ********************************* consensus_2052#0 TGCCAGTATTTACAGCC-ACCT-TGGTACAGAGGAACCAAATTGCAGATTTGCAA-ATAT 107 consensus_2052#1 TGCCAGTATTTACAGCCCACCTGTGGTCACCAGCAGGCACACCCAACATTGCCAGCATTT 119 ***************** **** **** ** * ** * * *** ** ** * consensus_2052#0 GGAATACTGTACAGTATGTTGGCAGGAGATGTACAACATCGTTCTG---AACATATAACA 164 consensus_2052#1 TGCCAACATCATGGCACATCACTGGTCACCAGTCATGTCTGGCCCAGGCAGCATGTTACA 179 * ** * * * * * ** * * * *** * *** consensus_2052#0 GT--TTGATGAAACACAGTTCCCTAGTAGGAGCAGAGGCTGGGGAGTTTCCCTTCCATCA 222 consensus_2052#1 ACCATCGGTTCTGCACACATCATCAACCAGTTTGCATGC---AAAACACAGGTTCCCTCA 236 * * * **** ** * * * ** * **** *** consensus_2052#0 TAAAAGAAAAAAAAAAGGAACACATAGTTCATGGCTCACAACAAAACTGAGGCATCTGAC 282 consensus_2052#1 GTCAGGCAGCAGCAGGCTGGGGCAGTTTCCCTTTCCC-CATCATAACACAAGCAACACAC 295 * * * * * ** * * * * * ** ** *** * *** * ** consensus_2052#0 AGTACTTTCTGAAGTACAAAATTGCCTCTCCATCAATCGCCCATAGAGGGCAAACAAGTC 342 consensus_2052#1 AACACACACNGGCACACCACCATTCAGTTCCAT-GGGCTCCCACACACCACACACACGTA 354 * ** * * ** * * * ***** * **** * * ** *** ** consensus_2052#0 AAATATATATATATATATATATTTTTTCTCACTCAAGGTATGTCATTCATTCACTGTGTA 402 consensus_2052#1 GCA---AGGCCTATCTGCACCAGTCCACT-ATTCTAGCAAAGTCAC-CAAACACATTGGC 409 * * *** * * * ** * ** ** * **** ** *** ** consensus_2052#0 ATCTCCTTTTTCTCGTTGTTGTAACCGGCAGCTCTCCCTGTTCTGCCTGTCAAGACCGAG 462 consensus_2052#1 CTCTCCCCATCCAAATCGCCCCCATAAGCAGGGGCGCACACACCAAAGTCCAACAATCAT 469 ***** * * * * * **** * * *** * * consensus_2052#0 TCTGGTGCTGGACCCTCGTATTCTCCGGTGAGACCACGGTAGGATCGTGCCTTGAGATAG 522 consensus_2052#1 CATCATCATCATCA---------------------------------------------- 483 * * * * consensus_2052#0 TCGATCGCAGACTTTGCTCCTCCTTGGTAAAGAACTGCATCATTATTCTGATTTTTTATA 582 consensus_2052#1 ------------------------------------------------------------ consensus_2052#0 CTTAGCGCCTTCTCTGTTACCTCAGCAAGTGCAAGCGATGTCTCTGGCTGTTCCTCGTTA 642 consensus_2052#1 ------------------------------------------------------------ consensus_2052#0 TCTTCAAGGCAATTATCTTCCACATAGCCACCTTTGATAAAGGAAAATCTTGCTTCTTCA 702 consensus_2052#1 ------------------------------------------------------------ consensus_2052#0 GTTGTGCTTGAAATTTCTGGTTTATCTGTAGTGATCAAATCCTTGAAATCTAGAAGATAC 762 consensus_2052#1 ------------------------------------------------------------ consensus_2052#0 TCTCCTGTCCATTCCCTTCCCCTGCTAAAAGCTAATACAGCTTCNAAAGGTGTAATGACT 822 consensus_2052#1 ------------------------------------------------------------ consensus_2052#0 GGAGCTAAA 831 consensus_2052#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||