cluster # 2061

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Oryza sativa
cluster # 2061 cluster # 2061 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2061#0 length = 800 sequences # 1

consensus_2061#1 length = 441 sequences # 1

consensusID : consensus_2061#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 800
fasta sequence

                              [TACCTCGTACGCGCCTCCGCGCCTCGCCGCACCACCCTCCGCCGGCGCCTTCCTTCCTCTAGCCCGCCGCCGCCGCCGTCCGCCCCGCGCTATCCGTCGCGCGCTCTCATCTCCCGTGACCACACGAGACCGGCCCGGCGGCGGGGAAGAGGAGAGGAGGGCGAGGATGAGGAAGAAGGTGGACGAGCGCATCCGGACGCTGATCGAGAACGGCGTGCGGGAGCGGCAGCGGTCCATGTTCGTCATCGTCGGCGACAAGTCGCGCGACCAGATCGTCAACCTCAACTACATGCTCGCCAAGTCCCGCGTCAAGTCCCGCCCCTCCGTCCTCTGGTGCTACCGCGACAAGCTCGAGATCAGCAGCCACAAGAAGAAGCGGGCCAAGCAGATCAAGAAGCTCATGCAGAGGGGGCTCATGGACCCCGAGAAGGCCGACCCCTTCTCGCTCTTCTTGGAGACGTCTGACATCACCTACTGCCTCTACAAGGACTCCGAGAGGGTTCTTGGCAACACATTCNGCATGAGCATCCTGCAGGATTTCGAGGCGCTCACGCNCAACCTACTCGCGAGGACCATCGAGACGGTTGAGGGTGCTGGTTTGATCATNCTGCTGCTCCGCTCCCTTTCCTCTCTCACCAGTCTTTATACAATGGTCATGGATGTCCATGAAAGATTCCGGACAGAGTCGCATACCCAGGCTGGTGCTAGGGTCAACGAGAGGTTCTGCTATCCATAGCGTCTTGCAAATATGGTGCGGCATGGATGACGAACTCAACAATTGCCTATATCTCTACATGAAA]

[+] EMBL BE040846             [TACCTCGTACGCGCCTCCGCGCCTCGCCGCACCACCCTCCGCCGGCGCCTTCCTTCCTCTAGCCCGCCGCCGCCGCCGTCCGCCCCGCGCTATCCGTCGCGCGCTCTCATCTCCCGTGACCACACGAGACCGGCCCGGCGGCGGGGAAGAGGAGAGGAGGGCGAGGATGAGGAAGAAGGTGGACGAGCGCATCCGGACGCTGATCGAGAACGGCGTGCGGGAGCGGCAGCGGTCCATGTTCGTCATCGTCGGCGACAAGTCGCGCGACCAGATCGTCAACCTCAACTACATGCTCGCCAAGTCCCGCGTCAAGTCCCGCCCCTCCGTCCTCTGGTGCTACCGCGACAAGCTCGAGATCAGCAGCCACAAGAAGAAGCGGGCCAAGCAGATCAAGAAGCTCATGCAGAGGGGGCTCATGGACCCCGAGAAGGCCGACCCCTTCTCGCTCTTCTTGGAGACGTCTGACATCACCTACTGCCTCTACAAGGACTCCGAGAGGGTTCTTGGCAACACATTCNGCATGAGCATCCTGCAGGATTTCGAGGCGCTCACGCNCAACCTACTCGCGAGGACCATCGAGACGGTTGAGGGTGCTGGTTTGATCATNCTGCTGCTCCGCTCCCTTTCCTCTCTCACCAGTCTTTATACAATGGTCATGGATGTCCATGAAAGATTCCGGACAGAGTCGCATACCCAGGCTGGTGCTAGGGTCAACGAGAGGTTCTGCTATCCATAGCGTCTTGCAAATATGGTGCGGCATGGATGACGAACTCAACAATTGCCTATATCTCTACATGAAA]




>consensus_2061#0
TACCTCGTACGCGCCTCCGCGCCTCGCCGCACCACCCTCCGCCGGCGCCTTCCTTCCTCT
AGCCCGCCGCCGCCGCCGTCCGCCCCGCGCTATCCGTCGCGCGCTCTCATCTCCCGTGAC
CACACGAGACCGGCCCGGCGGCGGGGAAGAGGAGAGGAGGGCGAGGATGAGGAAGAAGGT
GGACGAGCGCATCCGGACGCTGATCGAGAACGGCGTGCGGGAGCGGCAGCGGTCCATGTT
CGTCATCGTCGGCGACAAGTCGCGCGACCAGATCGTCAACCTCAACTACATGCTCGCCAA
GTCCCGCGTCAAGTCCCGCCCCTCCGTCCTCTGGTGCTACCGCGACAAGCTCGAGATCAG
CAGCCACAAGAAGAAGCGGGCCAAGCAGATCAAGAAGCTCATGCAGAGGGGGCTCATGGA
CCCCGAGAAGGCCGACCCCTTCTCGCTCTTCTTGGAGACGTCTGACATCACCTACTGCCT
CTACAAGGACTCCGAGAGGGTTCTTGGCAACACATTCNGCATGAGCATCCTGCAGGATTT
CGAGGCGCTCACGCNCAACCTACTCGCGAGGACCATCGAGACGGTTGAGGGTGCTGGTTT
GATCATNCTGCTGCTCCGCTCCCTTTCCTCTCTCACCAGTCTTTATACAATGGTCATGGA
TGTCCATGAAAGATTCCGGACAGAGTCGCATACCCAGGCTGGTGCTAGGGTCAACGAGAG
GTTCTGCTATCCATAGCGTCTTGCAAATATGGTGCGGCATGGATGACGAACTCAACAATT
GCCTATATCTCTACATGAAA

consensusID : consensus_2061#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [AGATTCCGGACAGAGTCGCATACCCAGGCTGCTGCTAGGTTCAACGAGAGGTTCTTGCTATCCATAGCGTCTTGCAAATCATGTGTCGTCATGGATGACGAACTCAACATTTTGCCTATATCCTCTCACATGAAATTTATACAACCAGTTACGAACAATGAGGATTCTGAGGGACTGTCAGAAAGGGAGAGAGAGTTGAAAGATCTAAAAGATCAATTCCGTGAAGACTTTCCAGTTGGTCCTTTAATTGGAAAGTGCTTCACGATGGATCAGGGTAAAGCTGTGATCAATTTCCTTGACTCTATTTTGGACAAGTCCCTGAGGAGCACAGTTGCCTTGCTTGCTGCTCGCGGACGGGGAAAATCAGCTGCCCTTGGTCTTGCTATTTGCTTGGAGCCATTGCTTGCTGGGGTATTCAAACATATTTGTCACAGCCCCAAG]

[+] EMBL C26360               [AGATTCCGGACAGAGTCGCATACCCAGGCTGCTGCTAGGTTCAACGAGAGGTTCTTGCTATCCATAGCGTCTTGCAAATCATGTGTCGTCATGGATGACGAACTCAACATTTTGCCTATATCCTCTCACATGAAATTTATACAACCAGTTACGAACAATGAGGATTCTGAGGGACTGTCAGAAAGGGAGAGAGAGTTGAAAGATCTAAAAGATCAATTCCGTGAAGACTTTCCAGTTGGTCCTTTAATTGGAAAGTGCTTCACGATGGATCAGGGTAAAGCTGTGATCAATTTCCTTGACTCTATTTTGGACAAGTCCCTGAGGAGCACAGTTGCCTTGCTTGCTGCTCGCGGACGGGGAAAATCAGCTGCCCTTGGTCTTGCTATTTGCTTGGAGCCATTGCTTGCTGGGGTATTCAAACATATTTGTCACAGCCCCAAG]




>consensus_2061#1
AGATTCCGGACAGAGTCGCATACCCAGGCTGCTGCTAGGTTCAACGAGAGGTTCTTGCTA
TCCATAGCGTCTTGCAAATCATGTGTCGTCATGGATGACGAACTCAACATTTTGCCTATA
TCCTCTCACATGAAATTTATACAACCAGTTACGAACAATGAGGATTCTGAGGGACTGTCA
GAAAGGGAGAGAGAGTTGAAAGATCTAAAAGATCAATTCCGTGAAGACTTTCCAGTTGGT
CCTTTAATTGGAAAGTGCTTCACGATGGATCAGGGTAAAGCTGTGATCAATTTCCTTGAC
TCTATTTTGGACAAGTCCCTGAGGAGCACAGTTGCCTTGCTTGCTGCTCGCGGACGGGGA
AAATCAGCTGCCCTTGGTCTTGCTATTTGCTTGGAGCCATTGCTTGCTGGGGTATTCAAA
CATATTTGTCACAGCCCCAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2061#0      TACCTCGTACGCGCCTCCGCGCCTCGCCGCACCACCCTCCGCCGGCGCCTTCCTTCCTCT 60
consensus_2061#1      ------------------------------------------------------------
                                                                                  

consensus_2061#0      AGCCCGCCGCCGCCGCCGTCCGCCCCGCGCTATCCGTCGCGCGCTCTCATCTCCCGTGAC 120
consensus_2061#1      ------------------------------------------------------------
                                                                                  

consensus_2061#0      CACACGAGACCGGCCCGGCGGCGGGGAAGAGGAGAGGAGGGCGAGGATGAGGAAGAAGGT 180
consensus_2061#1      ------------------------------------------------------------
                                                                                  

consensus_2061#0      GGACGAGCGCATCCGGACGCTGATCGAGAACGGCGTGCGGGAGCGGCAGCGGTCCATGTT 240
consensus_2061#1      -------------------------------AGATTCCGGACAGAGTCGCATACCCAGGC 29
                                                      *  * ***     *  **   **  *  

consensus_2061#0      CGTCATCGTCGGCGACAAGTCGCGCGACCAGATCGTCAACCTCAACTACATGCTCGCCAA 300
consensus_2061#1      TGCTGCTAGGTTCAACGAGAGGTTC-------TTGCTATCCATAGCGTCTTGCAAATCAT 82
                       *          * ** **  *  *       * *  * **  * *  * ***    ** 

consensus_2061#0      GTCCCGCGTCAAGTCCCG--CCCCTCCGTCCTCTGGTGCTACCGCG-ACAAGCTCGAGAT 357
consensus_2061#1      GTGTCGTCATGGATGACGAACTCAACATTTTGCCTATATCCTCTCACATGAAATTTATAC 142
                      **  **       *  **  * *  *  *   *   *     * *  *  *  *  * * 

consensus_2061#0      CAGCAGCCACAAGAAGAAGCGGGCCAAGCAGATCAAGAAGCTCATGCAGAGGGGGCTCAT 417
consensus_2061#1      AACCAGTTACGAACAATGAGGATTCTGAGGGACTGTCAGAA--AGGGAGAGAGAGTTGAA 200
                       * ***  ** *  *     *   *     **     *     * * **** * * * * 

consensus_2061#0      GGACCCCGAGAAGGCCGACCCCTTCTCGCTCTTCTTGGAGACGTCTGACATCACCTACTG 477
consensus_2061#1      AGATCT--AAAAGATCAATTCCGTGAAGACTTTCCAGTTGGTCCTTTA-ATTGGAAAGTG 257
                       ** *   * ***  * *  ** *   *   ***  *  *     * * **     * **

consensus_2061#0      CCTCTACAAGGACTCCGAGAGGGTTCTTGGCAACACATTCNGCATGAGCATCCTGCAGGA 537
consensus_2061#1      CTTCACGATGGATCAGGGTAAAGCTGTGATCAATTTCCTTGACTC---TATTTTGGACAA 314
                      * **   * ***    *  *  * * *   ***     *   *      **  ** *  *

consensus_2061#0      TTTCGAGGCGCTCACGCNCAACCTACTCGCGAGGACCATCGAGACGGTTGAGGGTGCTGG 597
consensus_2061#1      GTCCCTGAGGAGCACAGTTGCCTTGCTTGCT---GCTCGCGGACGGGGAAAATCAGCTGC 371
                       * *  *  *  ***      * * ** **     *   **    **   *    **** 

consensus_2061#0      T-TTGATCATNCTGCTGCTCCGCTCCCTTTCCTCTCTCACCAGTCTTTATACAATGGTCA 656
consensus_2061#1      CCTTGGTCTTGCTATTTGCTTGGAGCCATTGCTTGCTGGGGTATTCAAACATATTTGTCA 431
                        *** ** * **  *     *   ** ** **  **      *    * * * * ****

consensus_2061#0      TGGATGTCCATGAAAGATTCCGGACAGAGTCGCATACCCAGGCTGGTGCTAGGGTCAACG 716
consensus_2061#1      CAGC--CCCAAG------------------------------------------------ 441
                        *    *** *                                                

consensus_2061#0      AGAGGTTCTGCTATCCATAGCGTCTTGCAAATATGGTGCGGCATGGATGACGAACTCAAC 776
consensus_2061#1      ------------------------------------------------------------
                                                                                  

consensus_2061#0      AATTGCCTATATCTCTACATGAAA 800
consensus_2061#1      ------------------------