These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2061#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 800 fasta sequence [TACCTCGTACGCGCCTCCGCGCCTCGCCGCACCACCCTCCGCCGGCGCCTTCCTTCCTCTAGCCCGCCGCCGCCGCCGTCCGCCCCGCGCTATCCGTCGCGCGCTCTCATCTCCCGTGACCACACGAGACCGGCCCGGCGGCGGGGAAGAGGAGAGGAGGGCGAGGATGAGGAAGAAGGTGGACGAGCGCATCCGGACGCTGATCGAGAACGGCGTGCGGGAGCGGCAGCGGTCCATGTTCGTCATCGTCGGCGACAAGTCGCGCGACCAGATCGTCAACCTCAACTACATGCTCGCCAAGTCCCGCGTCAAGTCCCGCCCCTCCGTCCTCTGGTGCTACCGCGACAAGCTCGAGATCAGCAGCCACAAGAAGAAGCGGGCCAAGCAGATCAAGAAGCTCATGCAGAGGGGGCTCATGGACCCCGAGAAGGCCGACCCCTTCTCGCTCTTCTTGGAGACGTCTGACATCACCTACTGCCTCTACAAGGACTCCGAGAGGGTTCTTGGCAACACATTCNGCATGAGCATCCTGCAGGATTTCGAGGCGCTCACGCNCAACCTACTCGCGAGGACCATCGAGACGGTTGAGGGTGCTGGTTTGATCATNCTGCTGCTCCGCTCCCTTTCCTCTCTCACCAGTCTTTATACAATGGTCATGGATGTCCATGAAAGATTCCGGACAGAGTCGCATACCCAGGCTGGTGCTAGGGTCAACGAGAGGTTCTGCTATCCATAGCGTCTTGCAAATATGGTGCGGCATGGATGACGAACTCAACAATTGCCTATATCTCTACATGAAA] [+] EMBL BE040846 [TACCTCGTACGCGCCTCCGCGCCTCGCCGCACCACCCTCCGCCGGCGCCTTCCTTCCTCTAGCCCGCCGCCGCCGCCGTCCGCCCCGCGCTATCCGTCGCGCGCTCTCATCTCCCGTGACCACACGAGACCGGCCCGGCGGCGGGGAAGAGGAGAGGAGGGCGAGGATGAGGAAGAAGGTGGACGAGCGCATCCGGACGCTGATCGAGAACGGCGTGCGGGAGCGGCAGCGGTCCATGTTCGTCATCGTCGGCGACAAGTCGCGCGACCAGATCGTCAACCTCAACTACATGCTCGCCAAGTCCCGCGTCAAGTCCCGCCCCTCCGTCCTCTGGTGCTACCGCGACAAGCTCGAGATCAGCAGCCACAAGAAGAAGCGGGCCAAGCAGATCAAGAAGCTCATGCAGAGGGGGCTCATGGACCCCGAGAAGGCCGACCCCTTCTCGCTCTTCTTGGAGACGTCTGACATCACCTACTGCCTCTACAAGGACTCCGAGAGGGTTCTTGGCAACACATTCNGCATGAGCATCCTGCAGGATTTCGAGGCGCTCACGCNCAACCTACTCGCGAGGACCATCGAGACGGTTGAGGGTGCTGGTTTGATCATNCTGCTGCTCCGCTCCCTTTCCTCTCTCACCAGTCTTTATACAATGGTCATGGATGTCCATGAAAGATTCCGGACAGAGTCGCATACCCAGGCTGGTGCTAGGGTCAACGAGAGGTTCTGCTATCCATAGCGTCTTGCAAATATGGTGCGGCATGGATGACGAACTCAACAATTGCCTATATCTCTACATGAAA] consensusID : consensus_2061#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [AGATTCCGGACAGAGTCGCATACCCAGGCTGCTGCTAGGTTCAACGAGAGGTTCTTGCTATCCATAGCGTCTTGCAAATCATGTGTCGTCATGGATGACGAACTCAACATTTTGCCTATATCCTCTCACATGAAATTTATACAACCAGTTACGAACAATGAGGATTCTGAGGGACTGTCAGAAAGGGAGAGAGAGTTGAAAGATCTAAAAGATCAATTCCGTGAAGACTTTCCAGTTGGTCCTTTAATTGGAAAGTGCTTCACGATGGATCAGGGTAAAGCTGTGATCAATTTCCTTGACTCTATTTTGGACAAGTCCCTGAGGAGCACAGTTGCCTTGCTTGCTGCTCGCGGACGGGGAAAATCAGCTGCCCTTGGTCTTGCTATTTGCTTGGAGCCATTGCTTGCTGGGGTATTCAAACATATTTGTCACAGCCCCAAG] [+] EMBL C26360 [AGATTCCGGACAGAGTCGCATACCCAGGCTGCTGCTAGGTTCAACGAGAGGTTCTTGCTATCCATAGCGTCTTGCAAATCATGTGTCGTCATGGATGACGAACTCAACATTTTGCCTATATCCTCTCACATGAAATTTATACAACCAGTTACGAACAATGAGGATTCTGAGGGACTGTCAGAAAGGGAGAGAGAGTTGAAAGATCTAAAAGATCAATTCCGTGAAGACTTTCCAGTTGGTCCTTTAATTGGAAAGTGCTTCACGATGGATCAGGGTAAAGCTGTGATCAATTTCCTTGACTCTATTTTGGACAAGTCCCTGAGGAGCACAGTTGCCTTGCTTGCTGCTCGCGGACGGGGAAAATCAGCTGCCCTTGGTCTTGCTATTTGCTTGGAGCCATTGCTTGCTGGGGTATTCAAACATATTTGTCACAGCCCCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2061#0 TACCTCGTACGCGCCTCCGCGCCTCGCCGCACCACCCTCCGCCGGCGCCTTCCTTCCTCT 60 consensus_2061#1 ------------------------------------------------------------ consensus_2061#0 AGCCCGCCGCCGCCGCCGTCCGCCCCGCGCTATCCGTCGCGCGCTCTCATCTCCCGTGAC 120 consensus_2061#1 ------------------------------------------------------------ consensus_2061#0 CACACGAGACCGGCCCGGCGGCGGGGAAGAGGAGAGGAGGGCGAGGATGAGGAAGAAGGT 180 consensus_2061#1 ------------------------------------------------------------ consensus_2061#0 GGACGAGCGCATCCGGACGCTGATCGAGAACGGCGTGCGGGAGCGGCAGCGGTCCATGTT 240 consensus_2061#1 -------------------------------AGATTCCGGACAGAGTCGCATACCCAGGC 29 * * *** * ** ** * consensus_2061#0 CGTCATCGTCGGCGACAAGTCGCGCGACCAGATCGTCAACCTCAACTACATGCTCGCCAA 300 consensus_2061#1 TGCTGCTAGGTTCAACGAGAGGTTC-------TTGCTATCCATAGCGTCTTGCAAATCAT 82 * * ** ** * * * * * ** * * * *** ** consensus_2061#0 GTCCCGCGTCAAGTCCCG--CCCCTCCGTCCTCTGGTGCTACCGCG-ACAAGCTCGAGAT 357 consensus_2061#1 GTGTCGTCATGGATGACGAACTCAACATTTTGCCTATATCCTCTCACATGAAATTTATAC 142 ** ** * ** * * * * * * * * * * * * * consensus_2061#0 CAGCAGCCACAAGAAGAAGCGGGCCAAGCAGATCAAGAAGCTCATGCAGAGGGGGCTCAT 417 consensus_2061#1 AACCAGTTACGAACAATGAGGATTCTGAGGGACTGTCAGAA--AGGGAGAGAGAGTTGAA 200 * *** ** * * * * ** * * * **** * * * * consensus_2061#0 GGACCCCGAGAAGGCCGACCCCTTCTCGCTCTTCTTGGAGACGTCTGACATCACCTACTG 477 consensus_2061#1 AGATCT--AAAAGATCAATTCCGTGAAGACTTTCCAGTTGGTCCTTTA-ATTGGAAAGTG 257 ** * * *** * * ** * * *** * * * * ** * ** consensus_2061#0 CCTCTACAAGGACTCCGAGAGGGTTCTTGGCAACACATTCNGCATGAGCATCCTGCAGGA 537 consensus_2061#1 CTTCACGATGGATCAGGGTAAAGCTGTGATCAATTTCCTTGACTC---TATTTTGGACAA 314 * ** * *** * * * * * *** * * ** ** * * consensus_2061#0 TTTCGAGGCGCTCACGCNCAACCTACTCGCGAGGACCATCGAGACGGTTGAGGGTGCTGG 597 consensus_2061#1 GTCCCTGAGGAGCACAGTTGCCTTGCTTGCT---GCTCGCGGACGGGGAAAATCAGCTGC 371 * * * * *** * * ** ** * ** ** * **** consensus_2061#0 T-TTGATCATNCTGCTGCTCCGCTCCCTTTCCTCTCTCACCAGTCTTTATACAATGGTCA 656 consensus_2061#1 CCTTGGTCTTGCTATTTGCTTGGAGCCATTGCTTGCTGGGGTATTCAAACATATTTGTCA 431 *** ** * ** * * ** ** ** ** * * * * * **** consensus_2061#0 TGGATGTCCATGAAAGATTCCGGACAGAGTCGCATACCCAGGCTGGTGCTAGGGTCAACG 716 consensus_2061#1 CAGC--CCCAAG------------------------------------------------ 441 * *** * consensus_2061#0 AGAGGTTCTGCTATCCATAGCGTCTTGCAAATATGGTGCGGCATGGATGACGAACTCAAC 776 consensus_2061#1 ------------------------------------------------------------ consensus_2061#0 AATTGCCTATATCTCTACATGAAA 800 consensus_2061#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||