cluster # 2067

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Oryza sativa
cluster # 2067 cluster # 2067 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2067#0 length = 507 sequences # 1

consensus_2067#1 length = 490 sequences # 1

consensusID : consensus_2067#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence

                              [GCTCGTCTGCTGCTGACTAGTGCCCTCGCCTCTACATCTGGTTTATACAGCTATCACTACTGATGAACATCATCGTCTTCCGTCGCCGACTGGTTATGCTGTCGCCGACTAGTGCTTTTATTTTCACAACTGCGCGTCTTCACTACCAGTTTGCTTCTGTTGCCGACGACTCGTGTTCACTTCATCACGGCAATGCAACTTTGTCATCATGGTAGAGCGACTTCATCTTTATTATCTTCGGCACTGGCAAACTCTATTGCTGCTACTTCGCAAGTTTTGCTACTTCACCAACCACGACGTCTTTGTGAGCCTCGACATCTCGGCATGCGATGCCATGTNATTTTACTACAACAAGAGGCTCTCCAACATTCATGATTTCTACTTGGACATCTNCAACACATATCTTCAATCAAGCAATAACTATNCGACGACAAGAGGCTACAGTNCTCGACTCTATGTNCAGTTGTTTNCCAACTAATCAAAGAGTCNGGGGCTACACAAATACNA]

[+] EMBL BU099174             [GCTCGTCTGCTGCTGACTAGTGCCCTCGCCTCTACATCTGGTTTATACAGCTATCACTACTGATGAACATCATCGTCTTCCGTCGCCGACTGGTTATGCTGTCGCCGACTAGTGCTTTTATTTTCACAACTGCGCGTCTTCACTACCAGTTTGCTTCTGTTGCCGACGACTCGTGTTCACTTCATCACGGCAATGCAACTTTGTCATCATGGTAGAGCGACTTCATCTTTATTATCTTCGGCACTGGCAAACTCTATTGCTGCTACTTCGCAAGTTTTGCTACTTCACCAACCACGACGTCTTTGTGAGCCTCGACATCTCGGCATGCGATGCCATGTNATTTTACTACAACAAGAGGCTCTCCAACATTCATGATTTCTACTTGGACATCTNCAACACATATCTTCAATCAAGCAATAACTATNCGACGACAAGAGGCTACAGTNCTCGACTCTATGTNCAGTTGTTTNCCAACTAATCAAAGAGTCNGGGGCTACACAAATACNA]




>consensus_2067#0
GCTCGTCTGCTGCTGACTAGTGCCCTCGCCTCTACATCTGGTTTATACAGCTATCACTAC
TGATGAACATCATCGTCTTCCGTCGCCGACTGGTTATGCTGTCGCCGACTAGTGCTTTTA
TTTTCACAACTGCGCGTCTTCACTACCAGTTTGCTTCTGTTGCCGACGACTCGTGTTCAC
TTCATCACGGCAATGCAACTTTGTCATCATGGTAGAGCGACTTCATCTTTATTATCTTCG
GCACTGGCAAACTCTATTGCTGCTACTTCGCAAGTTTTGCTACTTCACCAACCACGACGT
CTTTGTGAGCCTCGACATCTCGGCATGCGATGCCATGTNATTTTACTACAACAAGAGGCT
CTCCAACATTCATGATTTCTACTTGGACATCTNCAACACATATCTTCAATCAAGCAATAA
CTATNCGACGACAAGAGGCTACAGTNCTCGACTCTATGTNCAGTTGTTTNCCAACTAATC
AAAGAGTCNGGGGCTACACAAATACNA

consensusID : consensus_2067#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence

                              [CCCCNGACTGGTGTTTCTGCCTGCACGGCTGGCCTATTATGCCGCGGTTGTTGGGCGTTTACGTCTTCACCGACCGGCCGCCTCGCCACCGCCGACTGGTGTTTCTGCCTGCACAAGCTGGCCTGTTATGACGCCGACTGATGCTATCTTCTTCACGGGCTGGTACGTCGCCGTCACTGCTAATAGGCGTCATCATCTTCAACGCAAGCTATCTACGTCTGCCGCCGACTGGTGCTTTTATCTTCACCGACCGGTTTGCTTCTATTGCCGCCGACTTGTGTTCACTTCATCATGGCAATGCAACTTTGTTATCATGGTAGAGTGACTTCATCTTTATTATTTTCGGCACCGGCAAACTCTATTGCTGCTACTTCGCAAGTTTTGCTACTTCACCAACCACGACGTCTTTGTGAACCTCGACATCTCGGCATGCGATGCCATGTTATTTTACTACAACAAGTGGCTCTCCCATATTCAGGATTTCTATTTG]

[-] EMBL CA752592             [CCCCNGACTGGTGTTTCTGCCTGCACGGCTGGCCTATTATGCCGCGGTTGTTGGGCGTTTACGTCTTCACCGACCGGCCGCCTCGCCACCGCCGACTGGTGTTTCTGCCTGCACAAGCTGGCCTGTTATGACGCCGACTGATGCTATCTTCTTCACGGGCTGGTACGTCGCCGTCACTGCTAATAGGCGTCATCATCTTCAACGCAAGCTATCTACGTCTGCCGCCGACTGGTGCTTTTATCTTCACCGACCGGTTTGCTTCTATTGCCGCCGACTTGTGTTCACTTCATCATGGCAATGCAACTTTGTTATCATGGTAGAGTGACTTCATCTTTATTATTTTCGGCACCGGCAAACTCTATTGCTGCTACTTCGCAAGTTTTGCTACTTCACCAACCACGACGTCTTTGTGAACCTCGACATCTCGGCATGCGATGCCATGTTATTTTACTACAACAAGTGGCTCTCCCATATTCAGGATTTCTATTTG]




>consensus_2067#1
CCCCNGACTGGTGTTTCTGCCTGCACGGCTGGCCTATTATGCCGCGGTTGTTGGGCGTTT
ACGTCTTCACCGACCGGCCGCCTCGCCACCGCCGACTGGTGTTTCTGCCTGCACAAGCTG
GCCTGTTATGACGCCGACTGATGCTATCTTCTTCACGGGCTGGTACGTCGCCGTCACTGC
TAATAGGCGTCATCATCTTCAACGCAAGCTATCTACGTCTGCCGCCGACTGGTGCTTTTA
TCTTCACCGACCGGTTTGCTTCTATTGCCGCCGACTTGTGTTCACTTCATCATGGCAATG
CAACTTTGTTATCATGGTAGAGTGACTTCATCTTTATTATTTTCGGCACCGGCAAACTCT
ATTGCTGCTACTTCGCAAGTTTTGCTACTTCACCAACCACGACGTCTTTGTGAACCTCGA
CATCTCGGCATGCGATGCCATGTTATTTTACTACAACAAGTGGCTCTCCCATATTCAGGA
TTTCTATTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2067#0      ------------------------------------------------------------
consensus_2067#1      CCCCNGACTGGTGTTTCTGCCTGCACGGCTGGCCTATTATGCCGCGGTTGTTGGGCGTTT 60
                                                                                  

consensus_2067#0      ------------------------------------------------------------
consensus_2067#1      ACGTCTTCACCGACCGGCCGCCTCGCCACCGCCGACTGGTGTTTCTGCCTGCACAAGCTG 120
                                                                                  

consensus_2067#0      GCTCGTC-TGCTGCTGACTAGTGCCCTCGCCTCTACAT-CTGGTTTATACAGCTATCACT 58
consensus_2067#1      GCCTGTTATGACGCCGACTGATGCTATCTTCTTCACGGGCTGG--TACGTCGCCGTCACT 178
                      **  **  **  ** ****  ***  **  **  **   ****  **    **  *****

consensus_2067#0      ACTGATGAACATCATCGTCTTCCGTCGCCGACTGGTTATG-CTGTCGCCGACTAGTGCTT 117
consensus_2067#1      GCTAATAGGCGTCATCATCTTCAA-CGCAAGCTATCTACGTCTGCCGCCGACTGGTGCTT 237
                       ** **   * ***** *****   ***   **   ** * *** ******** ******

consensus_2067#0      TTATTTTCACAACTGCGCGTCTTCACTACCAGTTTGCTTCTGTTGCCGACGACTCGTGTT 177
consensus_2067#1      TTATCTTCAC---------------CGACCGGTTTGCTTCTATTGCCGCCGACTTGTGTT 282
                      **** *****               * *** ********** ****** ***** *****

consensus_2067#0      CACTTCATCACGGCAATGCAACTTTGTCATCATGGTAGAGCGACTTCATCTTTATTATCT 237
consensus_2067#1      CACTTCATCATGGCAATGCAACTTTGTTATCATGGTAGAGTGACTTCATCTTTATTATTT 342
                      ********** **************** ************ ***************** *

consensus_2067#0      TCGGCACTGGCAAACTCTATTGCTGCTACTTCGCAAGTTTTGCTACTTCACCAACCACGA 297
consensus_2067#1      TCGGCACCGGCAAACTCTATTGCTGCTACTTCGCAAGTTTTGCTACTTCACCAACCACGA 402
                      ******* ****************************************************

consensus_2067#0      CGTCTTTGTGAGCCTCGACATCTCGGCATGCGATGCCATGTNATTTTACTACAACAAGAG 357
consensus_2067#1      CGTCTTTGTGAACCTCGACATCTCGGCATGCGATGCCATGTTATTTTACTACAACAAGTG 462
                      *********** ***************************** **************** *

consensus_2067#0      GCTCTCCAACATTCATGATTTCTACTTGGACATCTNCAACACATATCTTCAATCAAGCAA 417
consensus_2067#1      GCTCTCCCATATTCAGGATTTCTATTTG-------------------------------- 490
                      ******* * ***** ******** ***                                

consensus_2067#0      TAACTATNCGACGACAAGAGGCTACAGTNCTCGACTCTATGTNCAGTTGTTTNCCAACTA 477
consensus_2067#1      ------------------------------------------------------------
                                                                                  

consensus_2067#0      ATCAAAGAGTCNGGGGCTACACAAATACNA 507
consensus_2067#1      ------------------------------