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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1750 fasta sequence
[CAAGGTCATCTCTCAGATCTTTGGTCAGTACAATAGTACAATGTTTTGGGCTTTTCATGCTCCTCTGCATCTAATCTCCTTTCTTGCTTGCTGACATCTCTCATTTTCTACTGACGGTCTTCTTTCTTGCATTCTCTGAATGGTTTTTGCAGTAGTGAAGGAGCATGAGATGCAGATTGGTAGTCCGACAGACGTGAAGCATGTCGCGCACATCGGTTGGGATGGCCTGACAGGGAATGCTTCTCCAAGCTGGGTAAATGTACCTGAATTTCAGTGAAATGATACAATCATCTTCTTGTTTCAAATTGTCTGATTTCTCTCATCTGTTCTTTAGATGAATGACATCAGGGCATCGTCTGAACTTCTGTCTTTGGGCAACTTTGCACCATCTGCAGGGACCTCTTGGGCTTCTCAAGGTATGGCAAGAATTACTTGTTCTTCAGAGTGGAAGATTTTCTGTGTTGGTGCGATTGCTTCATATGATTGTGGCTTCTTTGGGAAAGGCTTTGGTCTGTCTTATGAGTGGCATGTATGGATAAGCATGCAAACTTGGCAAGTTACTCTAGTTTAATCCTAGAATCATGGGCACGTCTGCATGTTCTTGATCTGGGATCCGGAGTTGCAGGGAACACTCCGATAAAACAAATCCACACTTCTGATTTCCTAACTACCAGCAGCATCTTTTGCCAGGCAATGGATTGTGTGTACACATGATTACTGAACCTTTTGAAAGAAAACTTGATGAATGATAAAAACATGTAAGCCTCTGGTAATCCTCTTCAATCATTATGTGATTGATGGTTAGAATCACGAGAATCGAAATTTATTACGAGTTAAGTAAGTGTGAGGAAGTTCAGAGAAAACAATGTTTAACCAAGAACAATACACTGTATCATGCATAGTTTAATACTGCAATACGGAGTGAGCTCGAGACGTGGTCTAGCTAATAAACTAGCAGAAATTTTCTTGTTGAACTCATATGGCAGGACAGGATTCGGATTTGATAAGAACATGATGTCCATTGTCCACTCATGCATAAATAGATCCTTCCCAAGGCACAAACACCGTAGATTAGATTCCCATTGTCACAAACTGCTGTCTGACAGACAACAAACAAGCATGCTAATGGCCACGGAACGACTGAAATTTTGCATGATCACTCAACATATTCAGTTAAACACTGCTGCAACAATGCAGTTCTTGGACAGCATCAGCAATCGGCCATGTCGATCCTAATGTCTTCTTGGCACTCACATGCTGATCTGCTTCCACTGTTGGGACAGATTTCGACCAGCCTCGAGACTCGTCGTCCTTCGCCACGCCGTCAGAGAACACCAGCCTGCAGCAGCAAGAAGCGGCGCCGCCTCCTGACATACCACGCCCGCCGGCGGCGAGGAAGACGAGGCGGAAGCGGAGGTCCACGAGCGACTGCCCGGTGCCTTCTTCTTCTTCTTCGGCGAGACCCAGCTGCGATTCCACCATGGCGCCTGCTTCCGACGCCAATGCGTCGCAAGATCAAAACTGCAACTCTGCAACGTGAAGTGCAGCACTGATCGAATTTCCGGGTGTGCTACTGCTACTTGCGCAGAGAGTGCTGTACATCGTTGTCTGTTCAGTGCTCTCTGCTTTGCGCCAACTGTACATGTAAATGGGTTTGGAGTTTGGAGTGCAGATTAATCGGCGATCGTACGGAGAAATTGGAATGTGATCGCCGTTTGTGTGTTTGATTGTGACTAACCAGAGAAGTTAA]
[+] EMBL AK067855 [CAAGGTCATCTCTCAGATCTTTGGTCAGTACAATAGTACAATGTTTTGGGCTTTTCATGCTCCTCTGCATCTAATCTCCTTTCTTGCTTGCTGACATCTCTCATTTTCTACTGACGGTCTTCTTTCTTGCATTCTCTGAATGGTTTTTGCAGTAGTGAAGGAGCATGAGATGCAGATTGGTAGTCCGACAGACGTGAAGCATGTCGCGCACATCGGTTGGGATGGCCTGACAGGGAATGCTTCTCCAAGCTGGGTAAATGTACCTGAATTTCAGTGAAATGATACAATCATCTTCTTGTTTCAAATTGTCTGATTTCTCTCATCTGTTCTTTAGATGAATGACATCAGGGCATCGTCTGAACTTCTGTCTTTGGGCAACTTTGCACCATCTGCAGGGACCTCTTGGGCTTCTCAAGGTATGGCAAGAATTACTTGTTCTTCAGAGTGGAAGATTTTCTGTGTTGGTGCGATTGCTTCATATGATTGTGGCTTCTTTGGGAAAGGCTTTGGTCTGTCTTATGAGTGGCATGTATGGATAAGCATGCAAACTTGGCAAGTTACTCTAGTTTAATCCTAGAATCATGGGCACGTCTGCATGTTCTTGATCTGGGATCCGGAGTTGCAGGGAACACTCCGATAAAACAAATCCACACTTCTGATTTCCTAACTACCAGCAGCATCTTTTGCCAGGCAATGGATTGTGTGTACACATGATTACTGAACCTTTTGAAAGAAAACTTGATGAATGATAAAAACATGTAAGCCTCTGGTAATCCTCTTCAATCATTATGTGATTGATGGTTAGAATCACGAGAATCGAAATTTATTACGAGTTAAGTAAGTGTGAGGAAGTTCAGAGAAAACAATGTTTAACCAAGAACAATACACTGTATCATGCATAGTTTAATACTGCAATACGGAGTGAGCTCGAGACGTGGTCTAGCTAATAAACTAGCAGAAATTTTCTTGTTGAACTCATATGGCAGGACAGGATTCGGATTTGATAAGAACATGATGTCCATTGTCCACTCATGCATAAATAGATCCTTCCCAAGGCACAAACACCGTAGATTAGATTCCCATTGTCACAAACTGCTGTCTGACAGACAACAAACAAGCATGCTAATGGCCACGGAACGACTGAAATTTTGCATGATCACTCAACATATTCAGTTAAACACTGCTGCAACAATGCAGTTCTTGGACAGCATCAGCAATCGGCCATGTCGATCCTAATGTCTTCTTGGCACTCACATGCTGATCTGCTTCCACTGTTGGGACAGATTTCGACCAGCCTCGAGACTCGTCGTCCTTCGCCACGCCGTCAGAGAACACCAGCCTGCAGCAGCAAGAAGCGGCGCCGCCTCCTGACATACCACGCCCGCCGGCGGCGAGGAAGACGAGGCGGAAGCGGAGGTCCACGAGCGACTGCCCGGTGCCTTCTTCTTCTTCTTCGGCGAGACCCAGCTGCGATTCCACCATGGCGCCTGCTTCCGACGCCAATGCGTCGCAAGATCAAAACTGCAACTCTGCAACGTGAAGTGCAGCACTGATCGAATTTCCGGGTGTGCTACTGCTACTTGCGCAGAGAGTGCTGTACATCGTTGTCTGTTCAGTGCTCTCTGCTTTGCGCCAACTGTACATGTAAATGGGTTTGGAGTTTGGAGTGCAGATTAATCGGCGATCGTACGGAGAAATTGGAATGTGATCGCCGTTTGTGTGTTTGATTGTGACTAACCAGAGAAGTTAA]
consensusID : consensus_2068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[TCTGAAGAGCGTGTTTGTAAGGAACATCCCAATGGCGTACAAGATGAAAGGGATCTTCAAGGGACTCAAGGTCATCTCTCAGATCTTTGTAGTGAAGGAGCATGAGATGCAGATTGGTAGTCCGACAGACGTGAAGCATGTCGCGCACATCGGTTGGGATGGCCTGACAGGGAATGCTTCTCCAAGCTGGATGAATGACATCAGGGCATCGTCTGAACTTCTGTCTTTGGGCAACTTTGCACCATCTGCAGGGACCTCTTGGGCTTCTCAAGATTTCGACCAGCCTCGAGACTCGTCGTCCTTCGCCACGCCGTCAGAGAACACCAGCCTGCAGCAGCAAGAAGCGGCGCCGCCTCCTGACATACCACGCCCGCCGGCGGCGAGGAAGACGAGGCGGAAGCGGAGGTCCACGAGCGACTGCCCGGTGCCTTCTTCTTCTTCTTCGGCGAGACCCAGCTGCGATTCCACCATGGCGCCTGCTTCCGACGCCAATGCGTCGCAAGATCAAAACTGCAACTCTGCAACGTGAAGTGCAGCACTGATCGAATTTCCGGGGTGTGCTACTGCTACTTGCGCAGAGAGTGCTGTACATCGTTGTCTGTTCAGTGCTCTCTGCTTTGCGCCAACTGTAC]
[+] EMBL CF335448 [TCTGAAGAGCGTGTTTGTAAGGAACATCCCAATGGCGTACAAGATGAAAGGGATCTTCAAGGGACTCAAGGTCATCTCTCAGATCTTTGTAGTGAAGGAGCATGAGATGCAGATTGGTAGTCCGACAGACGTGAAGCATGTCGCGCACATCGGTTGGGATGGCCTGACAGGGAATGCTTCTCCAAGCTGGATGAATGACATCAGGGCATCGTCTGAACTTCTGTCTTTGGGCAACTTTGCACCATCTGCAGGGACCTCTTGGGCTTCTCAAGATTTCGACCAGCCTCGAGACTCGTCGTCCTTCGCCACGCCGTCAGAGAACACCAGCCTGCAGCAGCAAGAAGCGGCGCCGCCTCCTGACATACCACGCCCGCCGGCGGCGAGGAAGACGAGGCGGAAGCGGAGGTCCACGAGCGACTGCCCGGTGCCTTCTTCTTCTTCTTCGGCGAGACCCAGCTGCGATTCCACCATGGCGCCTGCTTCCGACGCCAATGCGTCGCAAGATCAAAACTGCAACTCTGCAACGTGAAGTGCAGCACTGATCGAATTTCCGGGGTGTGCTACTGCTACTTGCGCAGAGAGTGCTGTACATCGTTGTCTGTTCAGTGCTCTCTGCTTTGCGCCAACTGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2068#0 CAAGGTCATCTCTCAGATCTTTGGTCAGTACAATAGTACAATGTTTTGGGCTTTTCATGC 60
consensus_2068#1 ------------------------------------------------------------
consensus_2068#0 TCCTCTGCATCTAATCTCCTTTCTTGCTTGCTGACATCTCTCATTTTCTACTGACGGTCT 120
consensus_2068#1 ------------------------------------------------------------
consensus_2068#0 TCTTTCTTGCATTCTCTGAATGGTTTTTGCAGTAGTGAAGGAGCATGAGATGCAGATTGG 180
consensus_2068#1 ------------------------------------------------------------
consensus_2068#0 TAGTCCGACAGACGTGAAGCATGTCGCGCACATCGGTTGGGATGGCCTGACAGGGAATGC 240
consensus_2068#1 ------------------------------------------------------------
consensus_2068#0 TTCTCCAAGCTGGGTAAATGTACCTGAATTTCAGTGAAATGATACAATCATCTTCTTGTT 300
consensus_2068#1 ------------------------------------------------------------
consensus_2068#0 TCAAATTGTCTGATTTCTCTCATCTGTTCTTTAGATGAATGACATCAGGGCATCGTCTGA 360
consensus_2068#1 ------------------------------------------------------------
consensus_2068#0 ACTTCTGTCTTTGGGCAACTTTGCACCATCTGCAGGGACCTCTTGGGCTTCTCAAGGTAT 420
consensus_2068#1 ------------------------------------------------------------
consensus_2068#0 GGCAAGAATTACTTGTTCTTCAGAGTGGAAGATTTTCTGTGTTGGTGCGATTGCTTCATA 480
consensus_2068#1 ------------------------------------------------------------
consensus_2068#0 TGATTGTGGCTTCTTTGGGAAAGGCTTTGGTCTGTCTTATGAGTGGCATGTATGGATAAG 540
consensus_2068#1 ------------------------------------------------------------
consensus_2068#0 CATGCAAACTTGGCAAGTTACTCTAGTTTAATCCTAGAATCATGGGCACGTCTGCATGTT 600
consensus_2068#1 ------------------------------------------------------------
consensus_2068#0 CTTGATCTGGGATCCGGAGTTGCAGGGAACACTCCGATAAAACAAATCCACACTTCTGAT 660
consensus_2068#1 ------------------------------------------------------------
consensus_2068#0 TTCCTAACTACCAGCAGCATCTTTTGCCAGGCAATGGATTGTGTGTACACATGATTACTG 720
consensus_2068#1 ------------------------------------------------------------
consensus_2068#0 AACCTTTTGAAAGAAAACTTGATGAATGATAAAAACATGTAAGCCTCTGGTAATCCTCTT 780
consensus_2068#1 ------------------------------------------------------------
consensus_2068#0 CAATCATTATGTGATTGATGGTTAGAATCACGAGAATCGAAATTTATTACGAGTTAAGTA 840
consensus_2068#1 ------------------------------------------------------------
consensus_2068#0 AGTGTGAGGAAGTTCAGAGAAAACAATGTTTAACCAAGAACAATACACTGTATCATGCAT 900
consensus_2068#1 ------------------------------------------------------------
consensus_2068#0 AGTTTAATACTGCAATACGGAGTGAGCTCGAGACGTGGTCTAGCTAATAAACTAGCAGAA 960
consensus_2068#1 ------------------------------------------------------------
consensus_2068#0 ATTTTCTTGTTGAACTCATATGGCAGGACAGGATTCGGATTTGATAAGAACATGATGTCC 1020
consensus_2068#1 ----------------------TCTGAAGAG----CGTGTTTGTAAGGAACAT----CCC 30
* * * ** ** **** * ****** **
consensus_2068#0 ATTGTCCACTCATGCATAAATAGATCCTTCCCAAGGCACAAACACCGTAGATTAGATTCC 1080
consensus_2068#1 AATGGC-GTACAAG-ATGAAAGGGATCTTCAAGGGACTCAAG-GTCATCTCTCAGATCTT 87
* ** * ** * ** ** * **** * * *** * * * ****
consensus_2068#0 CATTGTCACAAACTGCTGTCTGACAGACAACAAACAAGCATGCTAATGGCCACGGAACGA 1140
consensus_2068#1 TGTAGTGAAGGA-----GCATGAGATGCAG---ATTGGTAGTCCGACAGACGTGAAGC-- 137
* ** * * * *** * ** * * * * * * * * * *
consensus_2068#0 CTGAAATTTTGCATGATCACTCAACATATTCAGTTAAACACTGCTGCAACAATGCAGTTC 1200
consensus_2068#1 ---ATGTCGCGCAC-ATCGGTTGGGATGGCCTGACAGGGAATGCTTCTCCAAGCTGGAT- 192
* * *** *** * ** * * * * **** * *** * *
consensus_2068#0 TTGGACAGCATCAGCAATCGGCCATGTCGATCCTAATGTCTTCTTGGCACTCACATGCTG 1260
consensus_2068#1 --GAATGACATCAG-----GGCATCGTCTGAACTTCTGTCTT-TGGGCAACTTTGCACC- 243
* * ****** *** *** ** ****** * **** *
consensus_2068#0 ATCTGCTTCCACTGTTGGGAC------AGATTTCGACCAGCCTCGAGACTCGTCGTCCTT 1314
consensus_2068#1 ATCTGCAGGGACCTCTTGGGCTTCTCAAGATTTCGACCAGCCTCGAGACTCGTCGTCCTT 303
****** ** * ** * *********************************
consensus_2068#0 CGCCACGCCGTCAGAGAACACCAGCCTGCAGCAGCAAGAAGCGGCGCCGCCTCCTGACAT 1374
consensus_2068#1 CGCCACGCCGTCAGAGAACACCAGCCTGCAGCAGCAAGAAGCGGCGCCGCCTCCTGACAT 363
************************************************************
consensus_2068#0 ACCACGCCCGCCGGCGGCGAGGAAGACGAGGCGGAAGCGGAGGTCCACGAGCGACTGCCC 1434
consensus_2068#1 ACCACGCCCGCCGGCGGCGAGGAAGACGAGGCGGAAGCGGAGGTCCACGAGCGACTGCCC 423
************************************************************
consensus_2068#0 GGTGCCTTCTTCTTCTTCTTCGGCGAGACCCAGCTGCGATTCCACCATGGCGCCTGCTTC 1494
consensus_2068#1 GGTGCCTTCTTCTTCTTCTTCGGCGAGACCCAGCTGCGATTCCACCATGGCGCCTGCTTC 483
************************************************************
consensus_2068#0 CGACGCCAATGCGTCGCAAGATCAAAACTGCAACTCTGCAACGTGAAGTGCAGCACTGAT 1554
consensus_2068#1 CGACGCCAATGCGTCGCAAGATCAAAACTGCAACTCTGCAACGTGAAGTGCAGCACTGAT 543
************************************************************
consensus_2068#0 CGAATTTCCGGG-TGTGCTACTGCTACTTGCGCAGAGAGTGCTGTACATCGTTGTCTGTT 1613
consensus_2068#1 CGAATTTCCGGGGTGTGCTACTGCTACTTGCGCAGAGAGTGCTGTACATCGTTGTCTGTT 603
************ ***********************************************
consensus_2068#0 CAGTGCTCTCTGCTTTGCGCCAACTGTACATGTAAATGGGTTTGGAGTTTGGAGTGCAGA 1673
consensus_2068#1 CAGTGCTCTCTGCTTTGCGCCAACTGTAC------------------------------- 632
*****************************
consensus_2068#0 TTAATCGGCGATCGTACGGAGAAATTGGAATGTGATCGCCGTTTGTGTGTTTGATTGTGA 1733
consensus_2068#1 ------------------------------------------------------------
consensus_2068#0 CTAACCAGAGAAGTTAA 1750
consensus_2068#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||