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Oryza sativa
cluster # 2076 cluster # 2076       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2076#0 length = 2022 sequences # 2  

consensusID : consensus_2076#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2022
fasta sequence
                              [CTCTTGATGATGACTATGATCTTGTTGCGGTGAAGAGATATATTAGCAAAGATTTAAGGAAAGAGTTTATGGAAGAAGTAAGCATCCATAGTCAAATGAGTCACAGAAATGTGGTGGAGCTCATAGGCTATTGCATTGGAGAAAGTACTCTAATGATTGTTACTAAGTATATCTCCAAAGGAAACCTTGATGACATACTCCACAACAGTGACATTTCCATCCCTTTGGATGTAAGGCTGGGTATTGCTATAGGATGTGCGGACGCATTGAGCTACATGCATTCGATGCATTTATCGAATGGCAGTCTTATTTGTCATGGTGATATTAAGCCTGCCAACATACTTCTAGATAGCAATCTGACATCGAAATTGTCAGACTTTGGAGTGTCAAGGCTTCTTTCAGGTGGTGTCACTCAGTACACTGTACATATAAAAGGAAGCGTATCTTACATGGATCCTATATACTTTCATGAGGGTTGTCTTACTCCGAGGAGTGATGTTTATAGTTTCGGAATGGTTCTCTTGGAACTAATAGCTCGAAAAAGGGTAAGAAAAGGTGACATTAACCTCATTGGGGGTGGAGAAATATTTGATGCTGAGATAGCAAACCGGAGCAATATGAAGATTCTAAAAGAAATGAGGAAATTGGCAATTGAATGCCTAACACTGGACATTCATAAACGTCCTCAAATGAATGTTGTGGCAAAACGCCTTCGTACACTTAAAAAAGAATTAAAAGACATGCATGGAAGATACTCAGAACACATTTTGGCATCACACCGCTCATGGCGAAAAAATGACAACCAGGGGCCGAGCTATAATTCTAGGATGCAACTGAAGAAGAGTTTGAGCATTTTCAAGAGAAATCTTAGCAATTCTTCTAAGATCCTATTGGGACTCGGCAATATGAGAATTTTCACACAGGAGGAGCTAAATGAAATCACACAGAATTACTCGTGTCTACTCAGTGGAGGTACTTCGGGTAAGGTTTACAAAGGAACGCTTGAGGACAATACGGTGGTAGCGGTGAGGATATTTTCCGAGGCACTTGAGGGTTTCGAAGAGGCGTTTATCAACGGAGGGATGATCCTATCTCAAATTGTCCACAAGAACATCATCAGACTCTTGGGTTACTGCTTGAATGCTGATTGTCCCGCATTTGTGTACGAGTATGCTGCTAGAGGAACCCTCTCTGACATTCTAGATGGCCGTGAAGATTTCCCACTGCATTTACGCGTGAAGATCGCAGTTGAGACAGCAGAAGCATTAGAGTACCTCCATTCCTCAGCAGCTGGTATGATCAGACATGGCTATGTTGCACCATCCAAGACACTTGTTGATGACAGTTTCACGCCAAAGCTGACGGGATTCTCATGGGCGCAGAGGCTCAACAATGATGACAGCGCAATTCATGATCATGATAAGTACTGTGTGTCACTAAAACTGAAAACCGATGTGTATCAGTTTGGTGTTCTTGTCTTGACGCTCATTAGTAGGAAGAACTTTGCGTTTTATGCGGATCACGAACACCTTGTCTCGCAATTCCTTGCAGCTTACAAGGCAGATAACAGTGGAAGGGCATTTTTCGACGATGATATCACAACTCGTAGCGAAGATGTTGCTCTCCTCGAAGAGATAGGGAAGCTATTGCTCAAGTGTATTTGTTTGGAAATAGATCA-AAGACCAACAATGAAACAAGTGGCACAACACCTTCGGATCATTCGGAGATGTTGGAAGAATAATTGCACAGCCGATGGAGCTTCACTGGTAACTAATTAAATCTCATATATATCACTAGAGCTGATCAAGGAACTGAACTTGACAGTACACTTGGTTCACTCTAAGTGATCGTGTACAAGCATTGTGTGTGAATTGTAATATATTATTTGTTACCAGAACATCTTGCAGTATATGCTGCCATTCGGATGATGTTATCTGAACTTGCATGCAATCTGCTTCTTATGCGGTCGATCCCATGATGTTTATCTGAACTTGGTTCTACTAGTGGATATAGAAAATTCAT]

[+] EMBL AK105108             [CTCTTGATGATGACTATGATCTTGTTGCGGTGAAGAGATATATTAGCAAAGATTTAAGGAAAGAGTTTATGGAAGAAGTAAGCATCCATAGTCAAATGAGTCACAGAAATGTGGTGGAGCTCATAGGCTATTGCATTGGAGAAAGTACTCTAATGATTGTTACTAAGTATATCTCCAAAGGAAACCTTGATGACATACTCCACAACAGTGACATTTCCATCCCTTTGGATGTAAGGCTGGGTATTGCTATAGGATGTGCGGACGCATTGAGCTACATGCATTCGATGCATTTATCGAATGGCAGTCTTATTTGTCATGGTGATATTAAGCCTGCCAACATACTTCTAGATAGCAATCTGACATCGAAATTGTCAGACTTTGGAGTGTCAAGGCTTCTTTCAGGTGGTGTCACTCAGTACACTGTACATATAAAAGGAAGCGTATCTTACATGGATCCTATATACTTTCATGAGGGTTGTCTTACTCCGAGGAGTGATGTTTATAGTTTCGGAATGGTTCTCTTGGAACTAATAGCTCGAAAAAGGGTAAGAAAAGGTGACATTAACCTCATTGGGGGTGGAGAAATATTTGATGCTGAGATAGCAAACCGGAGCAATATGAAGATTCTAAAAGAAATGAGGAAATTGGCAATTGAATGCCTAACACTGGACATTCATAAACGTCCTCAAATGAATGTTGTGGCAAAACGCCTTCGTACACTTAAAAAAGAATTAAAAGACATGCATGGAAGATACTCAGAACACATTTTGGCATCACACCGCTCATGGCGAAAAAATGACAACCAGGGGCCGAGCTATAATTCTAGGATGCAACTGAAGAAGAGTTTGAGCATTTTCAAGAGAAATCTTAGCAATTCTTCTAAGATCCTATTGGGACTCGGCAATATGAGAATTTTCACACAGGAGGAGCTAAATGAAATCACACAGAATTACTCGTGTCTACTCAGTGGAGGTACTTCGGGTAAGGTTTACAAAGGAACGCTTGAGGACAATACGGTGGTAGCGGTGAGGATATTTTCCGAGGCACTTGAGGGTTTCGAAGAGGCGTTTATCAACGGAGGGATGATCCTATCTCAAATTGTCCACAAGAACATCATCAGACTCTTGGGTTACTGCTTGAATGCTGATTGTCCCGCATTTGTGTACGAGTATGCTGCTAGAGGAACCCTCTCTGACATTCTAGATGGCCGTGAAGATTTCCCACTGCATTTACGCGTGAAGATCGCAGTTGAGACAGCAGAAGCATTAGAGTACCTCCATTCCTCAGCAGCTGGTATGATCAGACATGGCTATGTTGCACCATCCAAGACACTTGTTGATGACAGTTTCACGCCAAAGCTGACGGGATTCTCATGGGCGCAGAGGCTCAACAATGATGACAGCGCAATTCATGATCATGATAAGTACTGTGTGTCACTAAAACTGAAAACCGATGTGTATCAGTTTGGTGTTCTTGTCTTGACGCTCATTAGTAGGAAGAACTTTGCGTTTTATGCGGATCACGAACACCTTGTCTCGCAATTCCTTGCAGCTTACAAGGCAGATAACAGTGGAAGGGCATTTTTCGACGATGATATCACAACTCGTAGCGAAGATGTTGCTCTCCTCGAAGAGATAGGGAAGCTATTGCTCAAGTGTATTTGTTTGGAAATAGATCA AAGACCAACAATGAAACAAGTGGCACAACACCTTCGGATCATTCGGAGATGTTGGAAGAATAATTGCACAGCCGATGGAGCTTCACTGGTAACTAATTAAATCTCATATATATCACTAGAGCTGATCAAGGAACTGAACTTGACAGTACACTTGGTTCACTCTAAGTGATCGTGTACAAGCATTGTGTGTGAATTGTAATATATTATTTGTTACCAGAACATCTTGCAGTATATGCTGCCATTCGGATGATGTTATCTGAACTTGCATGCAATCTGCTTCTTATGCGGTCGATCCCATGATGTTTATCTGAACTTGGTTCTACTAGTGGATATAGAAAATTCAT]
[+] EMBL BQ908901             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATCAGTTTGGTGTTCTTGTCTTGACGCTCATTAGTAGGAAGAACTTTGTGTTTTATGCGGATCACGAACACCTTGTCTCGCAATTCCTTGCAGCTTACAAGGCAGATAACAGTGGAAGGGCATTTTTCGACGATGATATCACAACTCGTAGCGAAGATGTTGCTCTCCTCGAAGAGATAGGGAAGCTATTGCTCAAGTGTATTTGTTTGGAAATAGATCACAAGACCAACAATGAAACAAGTGGCACAACACCTTCGGATCATTCGGAGATGTTGGAAGAATAATTGCACATCCGATGGAGCTTCACTGGTAACTAATTAAATCTCATATATATCACTAGAGCTGATCAAGGAACTGAACTTGACAGTACACTTGGTTCACTCTAAGTGATCGTGTACAAGCATTGTGTGTGAATTGTAATATATTATTTGTTACCAGAACATCTTGCAATATATGCTGCCATTCGGATGATGTTATCTGAAaaaaaa                                                                             ]


>consensus_2076#0 CTCTTGATGATGACTATGATCTTGTTGCGGTGAAGAGATATATTAGCAAAGATTTAAGGA AAGAGTTTATGGAAGAAGTAAGCATCCATAGTCAAATGAGTCACAGAAATGTGGTGGAGC TCATAGGCTATTGCATTGGAGAAAGTACTCTAATGATTGTTACTAAGTATATCTCCAAAG GAAACCTTGATGACATACTCCACAACAGTGACATTTCCATCCCTTTGGATGTAAGGCTGG GTATTGCTATAGGATGTGCGGACGCATTGAGCTACATGCATTCGATGCATTTATCGAATG GCAGTCTTATTTGTCATGGTGATATTAAGCCTGCCAACATACTTCTAGATAGCAATCTGA CATCGAAATTGTCAGACTTTGGAGTGTCAAGGCTTCTTTCAGGTGGTGTCACTCAGTACA CTGTACATATAAAAGGAAGCGTATCTTACATGGATCCTATATACTTTCATGAGGGTTGTC TTACTCCGAGGAGTGATGTTTATAGTTTCGGAATGGTTCTCTTGGAACTAATAGCTCGAA AAAGGGTAAGAAAAGGTGACATTAACCTCATTGGGGGTGGAGAAATATTTGATGCTGAGA TAGCAAACCGGAGCAATATGAAGATTCTAAAAGAAATGAGGAAATTGGCAATTGAATGCC TAACACTGGACATTCATAAACGTCCTCAAATGAATGTTGTGGCAAAACGCCTTCGTACAC TTAAAAAAGAATTAAAAGACATGCATGGAAGATACTCAGAACACATTTTGGCATCACACC GCTCATGGCGAAAAAATGACAACCAGGGGCCGAGCTATAATTCTAGGATGCAACTGAAGA AGAGTTTGAGCATTTTCAAGAGAAATCTTAGCAATTCTTCTAAGATCCTATTGGGACTCG GCAATATGAGAATTTTCACACAGGAGGAGCTAAATGAAATCACACAGAATTACTCGTGTC TACTCAGTGGAGGTACTTCGGGTAAGGTTTACAAAGGAACGCTTGAGGACAATACGGTGG TAGCGGTGAGGATATTTTCCGAGGCACTTGAGGGTTTCGAAGAGGCGTTTATCAACGGAG GGATGATCCTATCTCAAATTGTCCACAAGAACATCATCAGACTCTTGGGTTACTGCTTGA ATGCTGATTGTCCCGCATTTGTGTACGAGTATGCTGCTAGAGGAACCCTCTCTGACATTC TAGATGGCCGTGAAGATTTCCCACTGCATTTACGCGTGAAGATCGCAGTTGAGACAGCAG AAGCATTAGAGTACCTCCATTCCTCAGCAGCTGGTATGATCAGACATGGCTATGTTGCAC CATCCAAGACACTTGTTGATGACAGTTTCACGCCAAAGCTGACGGGATTCTCATGGGCGC AGAGGCTCAACAATGATGACAGCGCAATTCATGATCATGATAAGTACTGTGTGTCACTAA AACTGAAAACCGATGTGTATCAGTTTGGTGTTCTTGTCTTGACGCTCATTAGTAGGAAGA ACTTTGCGTTTTATGCGGATCACGAACACCTTGTCTCGCAATTCCTTGCAGCTTACAAGG CAGATAACAGTGGAAGGGCATTTTTCGACGATGATATCACAACTCGTAGCGAAGATGTTG CTCTCCTCGAAGAGATAGGGAAGCTATTGCTCAAGTGTATTTGTTTGGAAATAGATCAAA GACCAACAATGAAACAAGTGGCACAACACCTTCGGATCATTCGGAGATGTTGGAAGAATA ATTGCACAGCCGATGGAGCTTCACTGGTAACTAATTAAATCTCATATATATCACTAGAGC TGATCAAGGAACTGAACTTGACAGTACACTTGGTTCACTCTAAGTGATCGTGTACAAGCA TTGTGTGTGAATTGTAATATATTATTTGTTACCAGAACATCTTGCAGTATATGCTGCCAT TCGGATGATGTTATCTGAACTTGCATGCAATCTGCTTCTTATGCGGTCGATCCCATGATG TTTATCTGAACTTGGTTCTACTAGTGGATATAGAAAATTCAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)