These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2080#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 858 fasta sequence [CAGGAAGACGAACTGAAGCTCCGGATGAAGATCGAGGATACCAGGAGGGATTATGGGAAGAAGAGGAGGCAATTCGATGACTGGGCACAAAAGTACATGCACCAAACTGCGGGTATCCTTCCTGAGGACAGGAACCCTGACGGTGCACGCCCCGATCCAATGGCGGAACGGAAGGCTGCCATGGAAAAGTTGGAGCTTTCTATGAAGGAGCTGGAGGAGATGTATGTCAAGCAGTGCAGGGTGGTCAGGGAGAAGTCCCTCAGCCTTCTCAGGACGAATTTGCCGGAGCTGTTCAGAGTTGTGTCGGATTTCTCACTTCAGTCAGCTGGGATGTTCAAGGGCGTGTGGTCGATTGCACACACCAATGACCAACTGGATGAATAATATAAGTTCTTTTGTTGTTGTAATCTTTCTTTCTTTTTGTTTATGTTGATAGGTTGATTAGTTGTTGTATATTGATTTTTGGCTTGTGGTGCCGAGATTAAAAAAAAAAAGAATGATCCTTTTTGAGCTACTGTTGTTAAAATTCGTAGTATAGGTATAGGGAGTTTTACTTTTNACATTACATGGTGTTTGAAAGAGGGAACTGTATNTTTTTGTTTCATATTTGATAAATATTGGTAGGCTTTATCNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNAANNCCTCGGGGGGGGGGCCCCGGACCCCAATTCCCCTTATGGGGAGGTCGATTTACCGCCGCTCCTGGCCCGTGGTTAAAACGTGGGGAACTGGAAAACCCTTGGGGTTCCCAACTTAATTGCTTGAAACACATCCCCTTTGCCACTGGGGAAAAAAACAAAAAGGCCC] [+] EMBL CA758205 [CAGGAAGACGAACTGAAGCTCCGGATGAAGATCGAGGATACCAGGAGGGATTATGGGAAGAAGAGGAGGCAATTCGATGACTGGGCACAAAAGTACATGCACCAAACTGCGGGTATCCTTCCTGAGGACAGGAACCCTGACGGTGCACGCCCCGATCCAATGGCGGAACGGAAGGCTGCCATGGAAAAGTTGGAGCTTTCTATGAAGGAGCTGGAGGAGATGTATGTCAAGCAGTGCAGGGTGGTCAGGGAGAAGTCCCTCAGCCTTCTCAGGACGAATTTGCCGGAGCTGTTCAGAGTTGTGTCGGATTTCTCACTTCAGTCAGCTGGGATGTTCAAGGGCGTGTGGTCGATTGCACACACCAATGACCAACTGGATGAATAATATAAGTTCTTTTGTTGTTGTAATCTTTCTTTCTTTTTGTTTATGTTGATAGGTTGATTAGTTGTTGTATATTGATTTTTGGCTTGTGGTGCCGAGATTAAAAAAAAAAAGAATGATCCTTTTTGAGCTACTGTTGTTAAAATTCGTAGTATAGGTATAGGGAGTTTTACTTTTNACATTACATGGTGTTTGAAAGAGGGAACTGTATNTTTTTGTTTCATATTTGATAAATATTGGTAGGCTTTATCNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNAANNCCTCGGGGGGGGGGCCCCGGACCCCAATTCCCCTTATGGGGAGGTCGATTTACCGCCGCTCCTGGCCCGTGGTTAAAACGTGGGGAACTGGAAAACCCTTGGGGTTCCCAACTTAATTGCTTGAAACACATCCCCTTTGCCACTGGGGAAAAAAACAAAAAGGCCC] consensusID : consensus_2080#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence [AATTCTTTTTCTTTTTCTCTTTNTTTGGCTTTTTATCGTTTTNCACCTATCGGTNTTTTGACTTAGTTTTGTTTTGCTANTATTTGGANTCTTTTTTGCGCTTTGTGGTGCCGAGACTTAAAAAAAAAAAGAATGATCCTTTTTGAGCTACCTGTTGCTTAAAAATTCGTAGTATAGACTAATAGGACGTTTTAACTTTTACCACTTACCACTGGTATTTGAAAGAGGGAACTGTATTTTTTGTTTCATATTTGATAAATATTGTAGGCTTTATCCAAAAAAAAAAA] [+] EMBL BQ908797 [AATTCTTTTTCTTTTTCTCTTTNTTTGGCTTTTTATCGTTTTNCACCTATCGGTNTTTTGACTTAGTTTTGTTTTGCTANTATTTGGANTCTTTTTTGCGCTTTGTGGTGCCGAGACTTAAAAAAAAAAAGAATGATCCTTTTTGAGCTACCTGTTGCTTAAAAATTCGTAGTATAGACTAATAGGACGTTTTAACTTTTACCACTTACCACTGGTATTTGAAAGAGGGAACTGTATTTTTTGTTTCATATTTGATAAATATTGTAGGCTTTATCCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2080#0 CAGGAAGACGAACTGAAGCTCCGGATGAAGATCGAGGATACCAGGAGGGATTATGGGAAG 60 consensus_2080#1 ------------------------------------------------------------ consensus_2080#0 AAGAGGAGGCAATTCGATGACTGGGCACAAAAGTACATGCACCAAACTGCGGGTATCCTT 120 consensus_2080#1 ------------------------------------------------------------ consensus_2080#0 CCTGAGGACAGGAACCCTGACGGTGCACGCCCCGATCCAATGGCGGAACGGAAGGCTGCC 180 consensus_2080#1 ------------------------------------------------------------ consensus_2080#0 ATGGAAAAGTTGGAGCTTTCTATGAAGGAGCTGGAGGAGATGTATGTCAAGCAGTGCAGG 240 consensus_2080#1 ------------------------------------------------------------ consensus_2080#0 GTGGTCAGGGAGAAGTCCCTCAGCCTTCTCAGGACGAATTTGCCGGAGCTGTTCAGAGTT 300 consensus_2080#1 ------------------------------------------------------------ consensus_2080#0 GTGTCGGATTTCTCACTTCAGTCAGCTGGGATGTTCAAGGGCGTGTGGTCGATTGCACAC 360 consensus_2080#1 ------------------------------------------------------------ consensus_2080#0 ACCAATGACCAACTGGATGAATAATATAAGTTCTTTTGTTGTTGTA-ATCTTTCTTTCTT 419 consensus_2080#1 ---AATTCTTTTTCTTTTTCTCTTTNTTTGGCTTTTTATCGTTTTNCACCTATCGGTNTT 57 *** * * * * **** * *** * * ** ** * ** consensus_2080#0 TTTGTTTATGTTGATAGGTTGATTAGTTGTTGTATATTGATTTTTGGCTTGTGGTGCCGA 479 consensus_2080#1 TTGACTTAGTTTTGT---TTTGCTANTATTTGGANTCTTTTTTGCGCTTTGTGGTGCCGA 114 ** *** ** * ** ** * *** * * *** * ************ consensus_2080#0 GA-TTAAAAAAAAAAAGAATGATCCTTTTTGAGCTAC-TGTTGTT--AAAATTCGTAGTA 535 consensus_2080#1 GACTTAAAAAAAAAAAGAATGATCCTTTTTGAGCTACCTGTTGCTTAAAAATTCGTAGTA 174 ** ********************************** ***** * ************* consensus_2080#0 TAGGT--ATAGGGAGTTTTACTTTTNACA--TTACA--TGGTGTTTGAAAGAGGGAACTG 589 consensus_2080#1 TAGACTAATAGGACGTTTTAACTTTTACCACTTACCACTGGTATTTGAAAGAGGGAACTG 234 *** ***** ****** *** ** **** **** ***************** consensus_2080#0 TATNTTTTTGTTTCATATTTGATAAATATTGGTAGGCTTTATCNNNNNNNANNNNNNNNN 649 consensus_2080#1 TATTTTTT-GTTTCATATTTGATAAATATTG-TAGGCTTTATCCAAAAAAAAAAA----- 287 *** **** ********************** *********** * consensus_2080#0 NNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNAANNCCTCGGGGGGGGGGCCC 709 consensus_2080#1 ------------------------------------------------------------ consensus_2080#0 CGGACCCCAATTCCCCTTATGGGGAGGTCGATTTACCGCCGCTCCTGGCCCGTGGTTAAA 769 consensus_2080#1 ------------------------------------------------------------ consensus_2080#0 ACGTGGGGAACTGGAAAACCCTTGGGGTTCCCAACTTAATTGCTTGAAACACATCCCCTT 829 consensus_2080#1 ------------------------------------------------------------ consensus_2080#0 TGCCACTGGGGAAAAAAACAAAAAGGCCC 858 consensus_2080#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||