cluster # 2089

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2089 cluster # 2089 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2089#0 length = 347 sequences # 1

consensus_2089#1 length = 253 sequences # 1

consensusID : consensus_2089#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence

                              [CAGNGACGTNTGGGCTCCNTCCTCCTGTGCAGCCATCAAANNCGGGGTCGTACGCAACTNANATGCGAAAAAACGCGAGGAAATCACGCCAAAAACCGTAGCAAATCCCGTCCCCGAAATGGTTCCNTGTGCCGTGAGATTNTCCCACACAAATTCCATACTTCCCCTCCACGGCCGCACCCCCAAATGCCGCGTGTTTATCGTCCTGATCTGGGCGTGCTACGGCCGTGCAACCCTATACTGGCTTNTGGNCTCGTCGCCGGGGAAGTAGGGCGGTGGACGTCGTCGTCGTCGTCGGAGAGGACGACGTNGAAGGAAGCCGGAGGTGGGGTNGATTAAAGCTCAAC]

[+] EMBL AU062464             [CAGNGACGTNTGGGCTCCNTCCTCCTGTGCAGCCATCAAANNCGGGGTCGTACGCAACTNANATGCGAAAAAACGCGAGGAAATCACGCCAAAAACCGTAGCAAATCCCGTCCCCGAAATGGTTCCNTGTGCCGTGAGATTNTCCCACACAAATTCCATACTTCCCCTCCACGGCCGCACCCCCAAATGCCGCGTGTTTATCGTCCTGATCTGGGCGTGCTACGGCCGTGCAACCCTATACTGGCTTNTGGNCTCGTCGCCGGGGAAGTAGGGCGGTGGACGTCGTCGTCGTCGTCGGAGAGGACGACGTNGAAGGAAGCCGGAGGTGGGGTNGATTAAAGCTCAAC]




>consensus_2089#0
CAGNGACGTNTGGGCTCCNTCCTCCTGTGCAGCCATCAAANNCGGGGTCGTACGCAACTN
ANATGCGAAAAAACGCGAGGAAATCACGCCAAAAACCGTAGCAAATCCCGTCCCCGAAAT
GGTTCCNTGTGCCGTGAGATTNTCCCACACAAATTCCATACTTCCCCTCCACGGCCGCAC
CCCCAAATGCCGCGTGTTTATCGTCCTGATCTGGGCGTGCTACGGCCGTGCAACCCTATA
CTGGCTTNTGGNCTCGTCGCCGGGGAAGTAGGGCGGTGGACGTCGTCGTCGTCGTCGGAG
AGGACGACGTNGAAGGAAGCCGGAGGTGGGGTNGATTAAAGCTCAAC

consensusID : consensus_2089#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 253
fasta sequence

                              [GCACGTGCCGTGCCTGCTCCTCCCTCCTCCTGTGCAGCCATCAAACGCGGGGTCGTACGAACTGAGATGCGAAAAAACGCGAGGAAATCACGCCAAAAACCGTAGCAAATCCCGTCCCCGAAATGGATCCGTGTGCCGTGAGATTCTCCCACACAAATTCCATACTTCCCCTCCACGGCCGCACCCCCAAGTCCGTGAGATCTATACCCTGAAATCCCACTGTTTCTNNNNAAAGATCGCGTAATTTTGTTGT]

[+] EMBL CF196344             [GCACGTGCCGTGCCTGCTCCTCCCTCCTCCTGTGCAGCCATCAAACGCGGGGTCGTACGAACTGAGATGCGAAAAAACGCGAGGAAATCACGCCAAAAACCGTAGCAAATCCCGTCCCCGAAATGGATCCGTGTGCCGTGAGATTCTCCCACACAAATTCCATACTTCCCCTCCACGGCCGCACCCCCAAGTCCGTGAGATCTATACCCTGAAATCCCACTGTTTCTNNNNAAAGATCGCGTAATTTTGTTGT]




>consensus_2089#1
GCACGTGCCGTGCCTGCTCCTCCCTCCTCCTGTGCAGCCATCAAACGCGGGGTCGTACGA
ACTGAGATGCGAAAAAACGCGAGGAAATCACGCCAAAAACCGTAGCAAATCCCGTCCCCG
AAATGGATCCGTGTGCCGTGAGATTCTCCCACACAAATTCCATACTTCCCCTCCACGGCC
GCACCCCCAAGTCCGTGAGATCTATACCCTGAAATCCCACTGTTTCTNNNNAAAGATCGC
GTAATTTTGTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2089#0      -CA-GNGACGTNTGGGCTCCN---TCCTCCTGTGCAGCCATCAAANNCGGGGTCGTACGC 55
consensus_2089#1      GCACGTGCCGTGCCTGCTCCTCCCTCCTCCTGTGCAGCCATCAAACGCGGGGTCGTACG- 59
                       ** * * ***    *****    *********************  ************ 

consensus_2089#0      AACTNANATGCGAAAAAACGCGAGGAAATCACGCCAAAAACCGTAGCAAATCCCGTCCCC 115
consensus_2089#1      AACTGAGATGCGAAAAAACGCGAGGAAATCACGCCAAAAACCGTAGCAAATCCCGTCCCC 119
                      **** * *****************************************************

consensus_2089#0      GAAATGGTTCCNTGTGCCGTGAGATTNTCCCACACAAATTCCATACTTCCCCTCCACGGC 175
consensus_2089#1      GAAATGGATCCGTGTGCCGTGAGATTCTCCCACACAAATTCCATACTTCCCCTCCACGGC 179
                      ******* *** ************** *********************************

consensus_2089#0      CGCACCCCCAAATGCCGCGTGTTTATCGTCCTGATCTGGGCGTGCTACGGCCGTGCAACC 235
consensus_2089#1      CGCACCCCCAAGT-CCGTGAGATCTATACCCTGAAATCCCACTGTTTCTNNNNAAAGATC 238
                      *********** * *** * * *      *****  *     ** * *         * *

consensus_2089#0      CTATACTGGCTTNTGGNCTCGTCGCCGGGGAAGTAGGGCGGTGGACGTCGTCGTCGTCGT 295
consensus_2089#1      GCGTAAT--TTTGTTGT------------------------------------------- 253
                         ** *   ** * *                                            

consensus_2089#0      CGGAGAGGACGACGTNGAAGGAAGCCGGAGGTGGGGTNGATTAAAGCTCAAC 347
consensus_2089#1      ----------------------------------------------------