These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2089#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [CAGNGACGTNTGGGCTCCNTCCTCCTGTGCAGCCATCAAANNCGGGGTCGTACGCAACTNANATGCGAAAAAACGCGAGGAAATCACGCCAAAAACCGTAGCAAATCCCGTCCCCGAAATGGTTCCNTGTGCCGTGAGATTNTCCCACACAAATTCCATACTTCCCCTCCACGGCCGCACCCCCAAATGCCGCGTGTTTATCGTCCTGATCTGGGCGTGCTACGGCCGTGCAACCCTATACTGGCTTNTGGNCTCGTCGCCGGGGAAGTAGGGCGGTGGACGTCGTCGTCGTCGTCGGAGAGGACGACGTNGAAGGAAGCCGGAGGTGGGGTNGATTAAAGCTCAAC] [+] EMBL AU062464 [CAGNGACGTNTGGGCTCCNTCCTCCTGTGCAGCCATCAAANNCGGGGTCGTACGCAACTNANATGCGAAAAAACGCGAGGAAATCACGCCAAAAACCGTAGCAAATCCCGTCCCCGAAATGGTTCCNTGTGCCGTGAGATTNTCCCACACAAATTCCATACTTCCCCTCCACGGCCGCACCCCCAAATGCCGCGTGTTTATCGTCCTGATCTGGGCGTGCTACGGCCGTGCAACCCTATACTGGCTTNTGGNCTCGTCGCCGGGGAAGTAGGGCGGTGGACGTCGTCGTCGTCGTCGGAGAGGACGACGTNGAAGGAAGCCGGAGGTGGGGTNGATTAAAGCTCAAC] consensusID : consensus_2089#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence [GCACGTGCCGTGCCTGCTCCTCCCTCCTCCTGTGCAGCCATCAAACGCGGGGTCGTACGAACTGAGATGCGAAAAAACGCGAGGAAATCACGCCAAAAACCGTAGCAAATCCCGTCCCCGAAATGGATCCGTGTGCCGTGAGATTCTCCCACACAAATTCCATACTTCCCCTCCACGGCCGCACCCCCAAGTCCGTGAGATCTATACCCTGAAATCCCACTGTTTCTNNNNAAAGATCGCGTAATTTTGTTGT] [+] EMBL CF196344 [GCACGTGCCGTGCCTGCTCCTCCCTCCTCCTGTGCAGCCATCAAACGCGGGGTCGTACGAACTGAGATGCGAAAAAACGCGAGGAAATCACGCCAAAAACCGTAGCAAATCCCGTCCCCGAAATGGATCCGTGTGCCGTGAGATTCTCCCACACAAATTCCATACTTCCCCTCCACGGCCGCACCCCCAAGTCCGTGAGATCTATACCCTGAAATCCCACTGTTTCTNNNNAAAGATCGCGTAATTTTGTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2089#0 -CA-GNGACGTNTGGGCTCCN---TCCTCCTGTGCAGCCATCAAANNCGGGGTCGTACGC 55 consensus_2089#1 GCACGTGCCGTGCCTGCTCCTCCCTCCTCCTGTGCAGCCATCAAACGCGGGGTCGTACG- 59 ** * * *** ***** ********************* ************ consensus_2089#0 AACTNANATGCGAAAAAACGCGAGGAAATCACGCCAAAAACCGTAGCAAATCCCGTCCCC 115 consensus_2089#1 AACTGAGATGCGAAAAAACGCGAGGAAATCACGCCAAAAACCGTAGCAAATCCCGTCCCC 119 **** * ***************************************************** consensus_2089#0 GAAATGGTTCCNTGTGCCGTGAGATTNTCCCACACAAATTCCATACTTCCCCTCCACGGC 175 consensus_2089#1 GAAATGGATCCGTGTGCCGTGAGATTCTCCCACACAAATTCCATACTTCCCCTCCACGGC 179 ******* *** ************** ********************************* consensus_2089#0 CGCACCCCCAAATGCCGCGTGTTTATCGTCCTGATCTGGGCGTGCTACGGCCGTGCAACC 235 consensus_2089#1 CGCACCCCCAAGT-CCGTGAGATCTATACCCTGAAATCCCACTGTTTCTNNNNAAAGATC 238 *********** * *** * * * ***** * ** * * * * consensus_2089#0 CTATACTGGCTTNTGGNCTCGTCGCCGGGGAAGTAGGGCGGTGGACGTCGTCGTCGTCGT 295 consensus_2089#1 GCGTAAT--TTTGTTGT------------------------------------------- 253 ** * ** * * consensus_2089#0 CGGAGAGGACGACGTNGAAGGAAGCCGGAGGTGGGGTNGATTAAAGCTCAAC 347 consensus_2089#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||