These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [TTTGAAGAGCCAAAAGCCAGTAAACCATTTAATGACAATACTAAAGGAAGATGTGTGTTCCAAGAACACGTTCACCATTCTTAAACCAACACAAGGCACCATTCATATCAAGTNTNNCTAANNNTACTGATAAAAGTCACAGCTAATACAAAAAGAGCAAGATTTACATAAATGCTGGCATTTCTGGAAATGNNNATTGNNNNACCNNNNNNTTTNNNNNAATCCAACANNNTCACNNCCTCCAAATATCTTCTTCAATTTCTNNNCACN] [+] EMBL CF196059 [TTTGAAGAGCCAAAAGCCAGTAAACCATTTAATGACAATACTAAAGGAAGATGTGTGTTCCAAGAACACGTTCACCATTCTTAAACCAACACAAGGCACCATTCATATCAAGTNTNNCTAANNNTACTGATAAAAGTCACAGCTAATACAAAAAGAGCAAGATTTACATAAATGCTGGCATTTCTGGAAATGNNNATTGNNNNACCNNNNNNTTTNNNNNAATCCAACANNNTCACNNCCTCCAAATATCTTCTTCAATTTCTNNNCACN] consensusID : consensus_2096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence [TTTTTTTTTTCCAAGAACANGTTCACCATTCTTAAACCAGCANAAGGGACCATTCATATCAAGTTTAGCTAAAGATCACTGGATAAAAGTCACAGCTAATACAAAAAGAGCAAGATTTACATAAAGGCTGTCATTTCTGGGAAANGAGGATTGGAGTAACCCAGAGATTTCAAGAAATCCAACACGATCACGCCCCGGACGCGT] [-] EMBL BQ908272 [TTTTTTTTTTCCAAGAACANGTTCACCATTCTTAAACCAGCANAAGGGACCATTCATATCAAGTTTAGCTAAAGATCACTGGATAAAAGTCACAGCTAATACAAAAAGAGCAAGATTTACATAAAGGCTGTCATTTCTGGGAAANGAGGATTGGAGTAACCCAGAGATTTCAAGAAATCCAACACGATCACGCCCCGGACGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2096#0 TTTGAAGAGCCAAAAGCCAGTAAACCATTTAATGACAATACTAAAGGAAGATGTGTGTTC 60 consensus_2096#1 -------------------------------------------------TTTTTTTTTTC 11 * * * *** consensus_2096#0 CAAGAACACGTTCACCATTCTTAAACCAACACAAGGCACCATTCATATCAAGTNTNNCTA 120 consensus_2096#1 CAAGAACANGTTCACCATTCTTAAACCAGCANAAGGGACCATTCATATCAAGTTTAGCTA 71 ******** ******************* ** **** **************** * *** consensus_2096#0 ANNNT-ACTG-ATAAAAGTCACAGCTAATACAAAAAGAGCAAGATTTACATAAATGCTGG 178 consensus_2096#1 AAGATCACTGGATAAAAGTCACAGCTAATACAAAAAGAGCAAGATTTACATAAAGGCTGT 131 * * **** ******************************************* **** consensus_2096#0 CATTTCTGG-AAATGNNNATTGNNNNA-CCNNNNNNTTTNNNNNAATCCAACANNNTCAC 236 consensus_2096#1 CATTTCTGGGAAANGAGGATTGGAGTAACCCAGAGATTTCAAGAAATCCAACACGATCAC 191 ********* *** * **** * ** *** ********* **** consensus_2096#0 NNCCTCCAAATATCTTCTTCAATTTCTNNNCACN 270 consensus_2096#1 GCCCCGGACGCGT--------------------- 204 ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||