These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_21#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1386 fasta sequence [CAAGCGGCGGCGGCGGCAAGCCCCTCGTCACGGCCGTCACCAAGGACGGCGCCACCAAGCTCTACACCATCGCCGTCAAGGACGGCCACCCCCTCGCCCTCGACCTCTCCGGCGAGCTCGTCTGGTCGACCTGCGACGCCTCCCACTCCACCGTCCTCCCCTACGAGCGCGAGTGCGTGGAGGCCAACCACTACACGCCGCCGAGCTGCTGGATGCAGTACGGCGGCGCCGGCGGCGACTACCGCTACGGCAACAAATGCACGGCGCACCCGTACAACGGTGTCACCGGGAGGTGCGCGCCGGGGGACCTGACGCGCACGGCGCTCGCCGCGGACGCCACCAACGGCAGCAACCCGCTCTACCCGGTCACCTTCCCGGCCGTCGCCTCCTGCGCGCCGGGCTCCCTCCTCGCCTCGCTCCCCGCCGGCGCCGTCGGCGTCGCCGGTCTCGGGCGATCCGACCTCGCGCTGCACGCGCAGGTCGCGGCGACGCAGAACGTCGCCAAGAAGTTCGCGCTCTGCCTCCCGAGCGTCGCCGTCTTCGGCGGCGGCCCGTTCGTCCTCATCTTCCCCTACTCGCGGCCGGACATCATGCAGAAGCTGTCCTACACCGCGCTCCGCCGCAGCCCGGAGCTCGCCGGCGGCAATGGCGGCGGGTACTACATCACGGCCAAGAGCATCGAGGTGAACCACCACCAGGTGCCACTACCCAACCACGGGGCGCCACTCGTCGTCCAGCTGAGCTCCATGGTTCCGTACACCGAGCTCCGCCCCGACGTGTACGGCCCGTTCGTCAAGGCGTGGGACGAGATCCTGCAATGGCCGAAGAAGGTGGCGCCGCCGGTGGCGCCGTTCGAGCTGTGCTACGAGAGCCGGACGATCGGCTCGAACCGGCTCGGCTACGCCGTGCCGGACATCAACATCAACCTCGAGGACGGCGCGGCGTGGTACATCTTCGGCGGCAACTCGCTGGTGCAGGTGGACGACGCCACGGCGTGCTTCGCGTTCGTCGAGATGAGGCCGGAGAAGGTCGGGTACGGCCCGGCGGTGGTGATCGGCGGGCACCAGATGGAGCACAACCTGGTGGTGTTCGACGAGGAGAAGCAGCAGCTCGGCTTCAGTGGCCTCCTCTTTGGGCTCCAGACCACCTGCAGCAACTTCAACTTCACTGTCGCTGCCTAATGGTTTACAGTTAGTACATAGTTAGTACTAAAATTGAATAAGAGAACCATGTGTCCACTGTGATCGGCCCTCTAGCAAGAACTTAAGTTATAGAGGTCATAGATTGTTGTGAGCCATTTACTTGAGTTATGGAGGTCGTGCTGGTTTGCATGGATCAAGATTCATTGCGATTTTTCCTATCAGATAAAATTCAATGCGATTTCGT] [+] EMBL AK108620 [CAAGCGGCGGCGGCGGCAAGCCCCTCGTCACGGCCGTCACCAAGGACGGCGCCACCAAGCTCTACACCATCGCCGTCAAGGACGGCCACCCCCTCGCCCTCGACCTCTCCGGCGAGCTCGTCTGGTCGACCTGCGACGCCTCCCACTCCACCGTCCTCCCCTACGAGCGCGAGTGCGTGGAGGCCAACCACTACACGCCGCCGAGCTGCTGGATGCAGTACGGCGGCGCCGGCGGCGACTACCGCTACGGCAACAAATGCACGGCGCACCCGTACAACGGTGTCACCGGGAGGTGCGCGCCGGGGGACCTGACGCGCACGGCGCTCGCCGCGGACGCCACCAACGGCAGCAACCCGCTCTACCCGGTCACCTTCCCGGCCGTCGCCTCCTGCGCGCCGGGCTCCCTCCTCGCCTCGCTCCCCGCCGGCGCCGTCGGCGTCGCCGGTCTCGGGCGATCCGACCTCGCGCTGCACGCGCAGGTCGCGGCGACGCAGAACGTCGCCAAGAAGTTCGCGCTCTGCCTCCCGAGCGTCGCCGTCTTCGGCGGCGGCCCGTTCGTCCTCATCTTCCCCTACTCGCGGCCGGACATCATGCAGAAGCTGTCCTACACCGCGCTCCGCCGCAGCCCGGAGCTCGCCGGCGGCAATGGCGGCGGGTACTACATCACGGCCAAGAGCATCGAGGTGAACCACCACCAGGTGCCACTACCCAACCACGGGGCGCCACTCGTCGTCCAGCTGAGCTCCATGGTTCCGTACACCGAGCTCCGCCCCGACGTGTACGGCCCGTTCGTCAAGGCGTGGGACGAGATCCTGCAATGGCCGAAGAAGGTGGCGCCGCCGGTGGCGCCGTTCGAGCTGTGCTACGAGAGCCGGACGATCGGCTCGAACCGGCTCGGCTACGCCGTGCCGGACATCAACATCAACCTCGAGGACGGCGCGGCGTGGTACATCTTCGGCGGCAACTCGCTGGTGCAGGTGGACGACGCCACGGCGTGCTTCGCGTTCGTCGAGATGAGGCCGGAGAAGGTCGGGTACGGCCCGGCGGTGGTGATCGGCGGGCACCAGATGGAGCACAACCTGGTGGTGTTCGACGAGGAGAAGCAGCAGCTCGGCTTCAGTGGCCTCCTCTTTGGGCTCCAGACCACCTGCAGCAACTTCAACTTCACTGTCGCTGCCTAATGGTTTACAGTTAGTACATAGTTAGTACTAAAATTGAATAAGAGAACCATGTGTCCACTGTGATCGGCCCTCTAGCAAGAACTTAAGTTATAGAGGTCATAGATTGTTGTGAGCCATTTACTTGAGTTATGGAGGTCGTGCTGGTTTGCATGGATCAAGATTCATTGCGATTTTTCCTATCAGATAAAATTCAATGCGATTTCGT] consensusID : consensus_21#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [GCCGCTGCGNCGCCGTTCGAGCTGTGCTACGACTCGCGCGATCTGGGGTCGACGCGGCTGGTACGCCGTGCCGCAGATCGACCTGGTGCTGGAGGGCGGCAAGAACTGGACGGTGTTCGGCGGCAACTCGATGGCGCAGGTGAGCGACAACACGGCGTGCCTCGCGGTGGTGAAGGTGAAGGGGGAGAAGGGCAAGCCNCNCGCCCCGGCGGCGATCATCGGAGGGTTCCAGATGGAGAACAACCTGGTGGTGTTCGACGAGGAGAAGCAGCGGCTCGGATTCAGCGGCCTGCTCTGGGGGAGGCAGACCACCTGCAGCAACTTCAACTTCACTCTCGCCGCCTAGATCGAGTCGATTCCTCGAGCTCATAGCTTGCATTTGCATCGGAGATGTGCATGCATTTTTTTTTGGCATTATTATTATTATGAGTTGTGATTTGTAACAAGTACATTTCGATGAATAATGGAGAATACCACAGATTTGTTACTGAAAAAAA] [+] EMBL C98239 [GCCGCTGCGNCGCCGTTCGAGCTGTGCTACGACTCGCGCGATCTGGGGTCGACGCGGCTGGTACGCCGTGCCGCAGATCGACCTGGTGCTGGAGGGCGGCAAGAACTGGACGGTGTTCGGCGGCAACTCGATGGCGCAGGTGAGCGACAACACGGCGTGCCTCGCGGTGGTGAAGGTGAAGGGGGAGAAGGGCAAGCCNCNCGCCCCGGCGGCGATCATCGGAGGGTTCCAGATGGAGAACAACCTGGTGGTGTTCGACGAGGAGAAGCAGCGGCTCGGATTCAGCGGCCTGCTCTGGGGGAGGCAGACCACCTGCAGCAACTTCAACTTCACTCTCGCCGCCTAGATCGAGTCGATTCCTCGAGCTCATAGCTTGCATTTGCATCGGAGATGTGCATGCATTTTTTTTTGGCATTATTATTATTATGAGTTGTGATTTGTAACAAGTACATTTCGATGAATAATGGAGAATACCACAGATTTGTTACTGAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_21#0 CAAGCGGCGGCGGCGGCAAGCCCCTCGTCACGGCCGTCACCAAGGACGGCGCCACCAAGC 60 consensus_21#1 ------------------------------------------------------------ consensus_21#0 TCTACACCATCGCCGTCAAGGACGGCCACCCCCTCGCCCTCGACCTCTCCGGCGAGCTCG 120 consensus_21#1 ------------------------------------------------------------ consensus_21#0 TCTGGTCGACCTGCGACGCCTCCCACTCCACCGTCCTCCCCTACGAGCGCGAGTGCGTGG 180 consensus_21#1 ------------------------------------------------------------ consensus_21#0 AGGCCAACCACTACACGCCGCCGAGCTGCTGGATGCAGTACGGCGGCGCCGGCGGCGACT 240 consensus_21#1 ------------------------------------------------------------ consensus_21#0 ACCGCTACGGCAACAAATGCACGGCGCACCCGTACAACGGTGTCACCGGGAGGTGCGCGC 300 consensus_21#1 ------------------------------------------------------------ consensus_21#0 CGGGGGACCTGACGCGCACGGCGCTCGCCGCGGACGCCACCAACGGCAGCAACCCGCTCT 360 consensus_21#1 ------------------------------------------------------------ consensus_21#0 ACCCGGTCACCTTCCCGGCCGTCGCCTCCTGCGCGCCGGGCTCCCTCCTCGCCTCGCTCC 420 consensus_21#1 ------------------------------------------------------------ consensus_21#0 CCGCCGGCGCCGTCGGCGTCGCCGGTCTCGGGCGATCCGACCTCGCGCTGCACGCGCAGG 480 consensus_21#1 ------------------------------------------------------------ consensus_21#0 TCGCGGCGACGCAGAACGTCGCCAAGAAGTTCGCGCTCTGCCTCCCGAGCGTCGCCGTCT 540 consensus_21#1 ------------------------------------------------------------ consensus_21#0 TCGGCGGCGGCCCGTTCGTCCTCATCTTCCCCTACTCGCGGCCGGACATCATGCAGAAGC 600 consensus_21#1 ------------------------------------------------------------ consensus_21#0 TGTCCTACACCGCGCTCCGCCGCAGCCCGGAGCTCGCCGGCGGCAATGGCGGCGGGTACT 660 consensus_21#1 ------------------------------------------------------------ consensus_21#0 ACATCACGGCCAAGAGCATCGAGGTGAACCACCACCAGGTGCCACTACCCAACCACGGGG 720 consensus_21#1 ------------------------------------------------------------ consensus_21#0 CGCCACTCGTCGTCCAGCTGAGCTCCATGGTTCCGTACACCGAGCTCCGCCCCGACGTGT 780 consensus_21#1 ------------------------------------------------------------ consensus_21#0 ACGGCCCGTTCGTCAAGGCGTGGGACGAGATCCTGCAATGGCCGAAGAAGGTGGCGCCGC 840 consensus_21#1 -------------------------------------------------------GCCGC 5 ***** consensus_21#0 CGGTGGCGCCGTTCGAGCTGTGCTACGAGAGCCGGACGATCGGCTCGAACCGGCTCGGCT 900 consensus_21#1 TG-CGNCGCCGTTCGAGCTGTGCTACGACTCGCGCGATCTGGGGTCGACGCGGCT--GGT 62 * * ********************** ** * ** **** ***** * * consensus_21#0 ACGCCGTGCCGGACATCAACATCAACCTCGAGGACGGCGCGGCGTGGTACATCTTCGGCG 960 consensus_21#1 ACGCCGTGCCGCAGATCGACCTGGTGCTGGAGGGCGGCAAGAACTGGACGGTGTTCGGCG 122 *********** * *** ** * ** **** **** * *** * ******* consensus_21#0 GCAACTCGCTGGTGCAGGTGGACGACGCCACGGCGTGCTTCGCGTTCGTCGAGATGAGGC 1020 consensus_21#1 GCAACTCGATGGCGCAGGTGAGCGACAACACGGCGTGCCTCGCGGTGGTGAAGGTGAAGG 182 ******** *** ******* **** ********** ***** * ** ** *** * consensus_21#0 CGGAGAAGGTCGGGT---ACGGCCCGGCGGTGGTGATCGGCGGGCACCAGATGGAGCACA 1077 consensus_21#1 GGGAGAAGGGCAAGCCNCNCGCCCCGGCGGCGATCATCGGAGGGTTCCAGATGGAGAACA 242 ******** * * ** ******** * * ***** *** ********** *** consensus_21#0 ACCTGGTGGTGTTCGACGAGGAGAAGCAGCAGCTCGGCTTCAGTGGCCTCCTCTTTGGGC 1137 consensus_21#1 ACCTGGTGGTGTTCGACGAGGAGAAGCAGCGGCTCGGATTCAGCGGCCTGCTCTGGGGGA 302 ****************************** ****** ***** ***** **** *** consensus_21#0 TCCAGACCACCTGCAGCAACTTCAACTTCACTGTCGCTGCCTA-ATGGTTTACAGTTAGT 1196 consensus_21#1 GGCAGACCACCTGCAGCAACTTCAACTTCACTCTCGCCGCCTAGATCGAGTCGATTCCTC 362 ****************************** **** ***** ** * * * * consensus_21#0 ACATAGTTAGTACTAAAATTGAATAAGAGAACCATGTGTCCACTGTGATCGGCCCTCTAG 1256 consensus_21#1 GAGCTCATAGC-TTGCATTTGCATCGGAGA--TGTGCATGCATTTT-------TTTTTGG 412 *** * * *** ** **** ** * ** * * * * * consensus_21#0 CAAGAACTTAAGTTATAGAGGTCATAGATTGTTGTGAGC-CATTTACTTGAGTTATGGAG 1315 consensus_21#1 CATTA---TTATTATTATGAGTTGTGATTTGTAACAAGTACATTTCGATGAATAATGGAG 469 ** * * * * ** ** * **** ** ***** *** * ****** consensus_21#0 GTCGT-GCTGGTTTGC-ATGGATCAAGATTCATTGCGATTTTTCCTATCAGATAAAATTC 1373 consensus_21#1 AATACCACAGATTTGTTACTGAAAAAAA-------------------------------- 497 * * **** * ** ** * consensus_21#0 AATGCGATTTCGT 1386 consensus_21#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||