cluster # 21

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Oryza sativa
cluster # 21 cluster # 21 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_21#0 length = 1386 sequences # 1

consensus_21#1 length = 497 sequences # 1

consensusID : consensus_21#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1386
fasta sequence

                              [CAAGCGGCGGCGGCGGCAAGCCCCTCGTCACGGCCGTCACCAAGGACGGCGCCACCAAGCTCTACACCATCGCCGTCAAGGACGGCCACCCCCTCGCCCTCGACCTCTCCGGCGAGCTCGTCTGGTCGACCTGCGACGCCTCCCACTCCACCGTCCTCCCCTACGAGCGCGAGTGCGTGGAGGCCAACCACTACACGCCGCCGAGCTGCTGGATGCAGTACGGCGGCGCCGGCGGCGACTACCGCTACGGCAACAAATGCACGGCGCACCCGTACAACGGTGTCACCGGGAGGTGCGCGCCGGGGGACCTGACGCGCACGGCGCTCGCCGCGGACGCCACCAACGGCAGCAACCCGCTCTACCCGGTCACCTTCCCGGCCGTCGCCTCCTGCGCGCCGGGCTCCCTCCTCGCCTCGCTCCCCGCCGGCGCCGTCGGCGTCGCCGGTCTCGGGCGATCCGACCTCGCGCTGCACGCGCAGGTCGCGGCGACGCAGAACGTCGCCAAGAAGTTCGCGCTCTGCCTCCCGAGCGTCGCCGTCTTCGGCGGCGGCCCGTTCGTCCTCATCTTCCCCTACTCGCGGCCGGACATCATGCAGAAGCTGTCCTACACCGCGCTCCGCCGCAGCCCGGAGCTCGCCGGCGGCAATGGCGGCGGGTACTACATCACGGCCAAGAGCATCGAGGTGAACCACCACCAGGTGCCACTACCCAACCACGGGGCGCCACTCGTCGTCCAGCTGAGCTCCATGGTTCCGTACACCGAGCTCCGCCCCGACGTGTACGGCCCGTTCGTCAAGGCGTGGGACGAGATCCTGCAATGGCCGAAGAAGGTGGCGCCGCCGGTGGCGCCGTTCGAGCTGTGCTACGAGAGCCGGACGATCGGCTCGAACCGGCTCGGCTACGCCGTGCCGGACATCAACATCAACCTCGAGGACGGCGCGGCGTGGTACATCTTCGGCGGCAACTCGCTGGTGCAGGTGGACGACGCCACGGCGTGCTTCGCGTTCGTCGAGATGAGGCCGGAGAAGGTCGGGTACGGCCCGGCGGTGGTGATCGGCGGGCACCAGATGGAGCACAACCTGGTGGTGTTCGACGAGGAGAAGCAGCAGCTCGGCTTCAGTGGCCTCCTCTTTGGGCTCCAGACCACCTGCAGCAACTTCAACTTCACTGTCGCTGCCTAATGGTTTACAGTTAGTACATAGTTAGTACTAAAATTGAATAAGAGAACCATGTGTCCACTGTGATCGGCCCTCTAGCAAGAACTTAAGTTATAGAGGTCATAGATTGTTGTGAGCCATTTACTTGAGTTATGGAGGTCGTGCTGGTTTGCATGGATCAAGATTCATTGCGATTTTTCCTATCAGATAAAATTCAATGCGATTTCGT]

[+] EMBL AK108620             [CAAGCGGCGGCGGCGGCAAGCCCCTCGTCACGGCCGTCACCAAGGACGGCGCCACCAAGCTCTACACCATCGCCGTCAAGGACGGCCACCCCCTCGCCCTCGACCTCTCCGGCGAGCTCGTCTGGTCGACCTGCGACGCCTCCCACTCCACCGTCCTCCCCTACGAGCGCGAGTGCGTGGAGGCCAACCACTACACGCCGCCGAGCTGCTGGATGCAGTACGGCGGCGCCGGCGGCGACTACCGCTACGGCAACAAATGCACGGCGCACCCGTACAACGGTGTCACCGGGAGGTGCGCGCCGGGGGACCTGACGCGCACGGCGCTCGCCGCGGACGCCACCAACGGCAGCAACCCGCTCTACCCGGTCACCTTCCCGGCCGTCGCCTCCTGCGCGCCGGGCTCCCTCCTCGCCTCGCTCCCCGCCGGCGCCGTCGGCGTCGCCGGTCTCGGGCGATCCGACCTCGCGCTGCACGCGCAGGTCGCGGCGACGCAGAACGTCGCCAAGAAGTTCGCGCTCTGCCTCCCGAGCGTCGCCGTCTTCGGCGGCGGCCCGTTCGTCCTCATCTTCCCCTACTCGCGGCCGGACATCATGCAGAAGCTGTCCTACACCGCGCTCCGCCGCAGCCCGGAGCTCGCCGGCGGCAATGGCGGCGGGTACTACATCACGGCCAAGAGCATCGAGGTGAACCACCACCAGGTGCCACTACCCAACCACGGGGCGCCACTCGTCGTCCAGCTGAGCTCCATGGTTCCGTACACCGAGCTCCGCCCCGACGTGTACGGCCCGTTCGTCAAGGCGTGGGACGAGATCCTGCAATGGCCGAAGAAGGTGGCGCCGCCGGTGGCGCCGTTCGAGCTGTGCTACGAGAGCCGGACGATCGGCTCGAACCGGCTCGGCTACGCCGTGCCGGACATCAACATCAACCTCGAGGACGGCGCGGCGTGGTACATCTTCGGCGGCAACTCGCTGGTGCAGGTGGACGACGCCACGGCGTGCTTCGCGTTCGTCGAGATGAGGCCGGAGAAGGTCGGGTACGGCCCGGCGGTGGTGATCGGCGGGCACCAGATGGAGCACAACCTGGTGGTGTTCGACGAGGAGAAGCAGCAGCTCGGCTTCAGTGGCCTCCTCTTTGGGCTCCAGACCACCTGCAGCAACTTCAACTTCACTGTCGCTGCCTAATGGTTTACAGTTAGTACATAGTTAGTACTAAAATTGAATAAGAGAACCATGTGTCCACTGTGATCGGCCCTCTAGCAAGAACTTAAGTTATAGAGGTCATAGATTGTTGTGAGCCATTTACTTGAGTTATGGAGGTCGTGCTGGTTTGCATGGATCAAGATTCATTGCGATTTTTCCTATCAGATAAAATTCAATGCGATTTCGT]




>consensus_21#0
CAAGCGGCGGCGGCGGCAAGCCCCTCGTCACGGCCGTCACCAAGGACGGCGCCACCAAGC
TCTACACCATCGCCGTCAAGGACGGCCACCCCCTCGCCCTCGACCTCTCCGGCGAGCTCG
TCTGGTCGACCTGCGACGCCTCCCACTCCACCGTCCTCCCCTACGAGCGCGAGTGCGTGG
AGGCCAACCACTACACGCCGCCGAGCTGCTGGATGCAGTACGGCGGCGCCGGCGGCGACT
ACCGCTACGGCAACAAATGCACGGCGCACCCGTACAACGGTGTCACCGGGAGGTGCGCGC
CGGGGGACCTGACGCGCACGGCGCTCGCCGCGGACGCCACCAACGGCAGCAACCCGCTCT
ACCCGGTCACCTTCCCGGCCGTCGCCTCCTGCGCGCCGGGCTCCCTCCTCGCCTCGCTCC
CCGCCGGCGCCGTCGGCGTCGCCGGTCTCGGGCGATCCGACCTCGCGCTGCACGCGCAGG
TCGCGGCGACGCAGAACGTCGCCAAGAAGTTCGCGCTCTGCCTCCCGAGCGTCGCCGTCT
TCGGCGGCGGCCCGTTCGTCCTCATCTTCCCCTACTCGCGGCCGGACATCATGCAGAAGC
TGTCCTACACCGCGCTCCGCCGCAGCCCGGAGCTCGCCGGCGGCAATGGCGGCGGGTACT
ACATCACGGCCAAGAGCATCGAGGTGAACCACCACCAGGTGCCACTACCCAACCACGGGG
CGCCACTCGTCGTCCAGCTGAGCTCCATGGTTCCGTACACCGAGCTCCGCCCCGACGTGT
ACGGCCCGTTCGTCAAGGCGTGGGACGAGATCCTGCAATGGCCGAAGAAGGTGGCGCCGC
CGGTGGCGCCGTTCGAGCTGTGCTACGAGAGCCGGACGATCGGCTCGAACCGGCTCGGCT
ACGCCGTGCCGGACATCAACATCAACCTCGAGGACGGCGCGGCGTGGTACATCTTCGGCG
GCAACTCGCTGGTGCAGGTGGACGACGCCACGGCGTGCTTCGCGTTCGTCGAGATGAGGC
CGGAGAAGGTCGGGTACGGCCCGGCGGTGGTGATCGGCGGGCACCAGATGGAGCACAACC
TGGTGGTGTTCGACGAGGAGAAGCAGCAGCTCGGCTTCAGTGGCCTCCTCTTTGGGCTCC
AGACCACCTGCAGCAACTTCAACTTCACTGTCGCTGCCTAATGGTTTACAGTTAGTACAT
AGTTAGTACTAAAATTGAATAAGAGAACCATGTGTCCACTGTGATCGGCCCTCTAGCAAG
AACTTAAGTTATAGAGGTCATAGATTGTTGTGAGCCATTTACTTGAGTTATGGAGGTCGT
GCTGGTTTGCATGGATCAAGATTCATTGCGATTTTTCCTATCAGATAAAATTCAATGCGA
TTTCGT

consensusID : consensus_21#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence

                              [GCCGCTGCGNCGCCGTTCGAGCTGTGCTACGACTCGCGCGATCTGGGGTCGACGCGGCTGGTACGCCGTGCCGCAGATCGACCTGGTGCTGGAGGGCGGCAAGAACTGGACGGTGTTCGGCGGCAACTCGATGGCGCAGGTGAGCGACAACACGGCGTGCCTCGCGGTGGTGAAGGTGAAGGGGGAGAAGGGCAAGCCNCNCGCCCCGGCGGCGATCATCGGAGGGTTCCAGATGGAGAACAACCTGGTGGTGTTCGACGAGGAGAAGCAGCGGCTCGGATTCAGCGGCCTGCTCTGGGGGAGGCAGACCACCTGCAGCAACTTCAACTTCACTCTCGCCGCCTAGATCGAGTCGATTCCTCGAGCTCATAGCTTGCATTTGCATCGGAGATGTGCATGCATTTTTTTTTGGCATTATTATTATTATGAGTTGTGATTTGTAACAAGTACATTTCGATGAATAATGGAGAATACCACAGATTTGTTACTGAAAAAAA]

[+] EMBL C98239               [GCCGCTGCGNCGCCGTTCGAGCTGTGCTACGACTCGCGCGATCTGGGGTCGACGCGGCTGGTACGCCGTGCCGCAGATCGACCTGGTGCTGGAGGGCGGCAAGAACTGGACGGTGTTCGGCGGCAACTCGATGGCGCAGGTGAGCGACAACACGGCGTGCCTCGCGGTGGTGAAGGTGAAGGGGGAGAAGGGCAAGCCNCNCGCCCCGGCGGCGATCATCGGAGGGTTCCAGATGGAGAACAACCTGGTGGTGTTCGACGAGGAGAAGCAGCGGCTCGGATTCAGCGGCCTGCTCTGGGGGAGGCAGACCACCTGCAGCAACTTCAACTTCACTCTCGCCGCCTAGATCGAGTCGATTCCTCGAGCTCATAGCTTGCATTTGCATCGGAGATGTGCATGCATTTTTTTTTGGCATTATTATTATTATGAGTTGTGATTTGTAACAAGTACATTTCGATGAATAATGGAGAATACCACAGATTTGTTACTGAAAAAAA]




>consensus_21#1
GCCGCTGCGNCGCCGTTCGAGCTGTGCTACGACTCGCGCGATCTGGGGTCGACGCGGCTG
GTACGCCGTGCCGCAGATCGACCTGGTGCTGGAGGGCGGCAAGAACTGGACGGTGTTCGG
CGGCAACTCGATGGCGCAGGTGAGCGACAACACGGCGTGCCTCGCGGTGGTGAAGGTGAA
GGGGGAGAAGGGCAAGCCNCNCGCCCCGGCGGCGATCATCGGAGGGTTCCAGATGGAGAA
CAACCTGGTGGTGTTCGACGAGGAGAAGCAGCGGCTCGGATTCAGCGGCCTGCTCTGGGG
GAGGCAGACCACCTGCAGCAACTTCAACTTCACTCTCGCCGCCTAGATCGAGTCGATTCC
TCGAGCTCATAGCTTGCATTTGCATCGGAGATGTGCATGCATTTTTTTTTGGCATTATTA
TTATTATGAGTTGTGATTTGTAACAAGTACATTTCGATGAATAATGGAGAATACCACAGA
TTTGTTACTGAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_21#0      CAAGCGGCGGCGGCGGCAAGCCCCTCGTCACGGCCGTCACCAAGGACGGCGCCACCAAGC 60
consensus_21#1      ------------------------------------------------------------
                                                                                

consensus_21#0      TCTACACCATCGCCGTCAAGGACGGCCACCCCCTCGCCCTCGACCTCTCCGGCGAGCTCG 120
consensus_21#1      ------------------------------------------------------------
                                                                                

consensus_21#0      TCTGGTCGACCTGCGACGCCTCCCACTCCACCGTCCTCCCCTACGAGCGCGAGTGCGTGG 180
consensus_21#1      ------------------------------------------------------------
                                                                                

consensus_21#0      AGGCCAACCACTACACGCCGCCGAGCTGCTGGATGCAGTACGGCGGCGCCGGCGGCGACT 240
consensus_21#1      ------------------------------------------------------------
                                                                                

consensus_21#0      ACCGCTACGGCAACAAATGCACGGCGCACCCGTACAACGGTGTCACCGGGAGGTGCGCGC 300
consensus_21#1      ------------------------------------------------------------
                                                                                

consensus_21#0      CGGGGGACCTGACGCGCACGGCGCTCGCCGCGGACGCCACCAACGGCAGCAACCCGCTCT 360
consensus_21#1      ------------------------------------------------------------
                                                                                

consensus_21#0      ACCCGGTCACCTTCCCGGCCGTCGCCTCCTGCGCGCCGGGCTCCCTCCTCGCCTCGCTCC 420
consensus_21#1      ------------------------------------------------------------
                                                                                

consensus_21#0      CCGCCGGCGCCGTCGGCGTCGCCGGTCTCGGGCGATCCGACCTCGCGCTGCACGCGCAGG 480
consensus_21#1      ------------------------------------------------------------
                                                                                

consensus_21#0      TCGCGGCGACGCAGAACGTCGCCAAGAAGTTCGCGCTCTGCCTCCCGAGCGTCGCCGTCT 540
consensus_21#1      ------------------------------------------------------------
                                                                                

consensus_21#0      TCGGCGGCGGCCCGTTCGTCCTCATCTTCCCCTACTCGCGGCCGGACATCATGCAGAAGC 600
consensus_21#1      ------------------------------------------------------------
                                                                                

consensus_21#0      TGTCCTACACCGCGCTCCGCCGCAGCCCGGAGCTCGCCGGCGGCAATGGCGGCGGGTACT 660
consensus_21#1      ------------------------------------------------------------
                                                                                

consensus_21#0      ACATCACGGCCAAGAGCATCGAGGTGAACCACCACCAGGTGCCACTACCCAACCACGGGG 720
consensus_21#1      ------------------------------------------------------------
                                                                                

consensus_21#0      CGCCACTCGTCGTCCAGCTGAGCTCCATGGTTCCGTACACCGAGCTCCGCCCCGACGTGT 780
consensus_21#1      ------------------------------------------------------------
                                                                                

consensus_21#0      ACGGCCCGTTCGTCAAGGCGTGGGACGAGATCCTGCAATGGCCGAAGAAGGTGGCGCCGC 840
consensus_21#1      -------------------------------------------------------GCCGC 5
                                                                           *****

consensus_21#0      CGGTGGCGCCGTTCGAGCTGTGCTACGAGAGCCGGACGATCGGCTCGAACCGGCTCGGCT 900
consensus_21#1      TG-CGNCGCCGTTCGAGCTGTGCTACGACTCGCGCGATCTGGGGTCGACGCGGCT--GGT 62
                     *  * **********************    **     * ** ****  *****  * *

consensus_21#0      ACGCCGTGCCGGACATCAACATCAACCTCGAGGACGGCGCGGCGTGGTACATCTTCGGCG 960
consensus_21#1      ACGCCGTGCCGCAGATCGACCTGGTGCTGGAGGGCGGCAAGAACTGGACGGTGTTCGGCG 122
                    *********** * *** ** *    ** **** ****  *   ***    * *******

consensus_21#0      GCAACTCGCTGGTGCAGGTGGACGACGCCACGGCGTGCTTCGCGTTCGTCGAGATGAGGC 1020
consensus_21#1      GCAACTCGATGGCGCAGGTGAGCGACAACACGGCGTGCCTCGCGGTGGTGAAGGTGAAGG 182
                    ******** *** *******  ****  ********** ***** * **  ** *** * 

consensus_21#0      CGGAGAAGGTCGGGT---ACGGCCCGGCGGTGGTGATCGGCGGGCACCAGATGGAGCACA 1077
consensus_21#1      GGGAGAAGGGCAAGCCNCNCGCCCCGGCGGCGATCATCGGAGGGTTCCAGATGGAGAACA 242
                     ******** *  *     ** ******** * * ***** ***  ********** ***

consensus_21#0      ACCTGGTGGTGTTCGACGAGGAGAAGCAGCAGCTCGGCTTCAGTGGCCTCCTCTTTGGGC 1137
consensus_21#1      ACCTGGTGGTGTTCGACGAGGAGAAGCAGCGGCTCGGATTCAGCGGCCTGCTCTGGGGGA 302
                    ****************************** ****** ***** ***** ****  *** 

consensus_21#0      TCCAGACCACCTGCAGCAACTTCAACTTCACTGTCGCTGCCTA-ATGGTTTACAGTTAGT 1196
consensus_21#1      GGCAGACCACCTGCAGCAACTTCAACTTCACTCTCGCCGCCTAGATCGAGTCGATTCCTC 362
                      ****************************** **** ***** ** *  *  * *    

consensus_21#0      ACATAGTTAGTACTAAAATTGAATAAGAGAACCATGTGTCCACTGTGATCGGCCCTCTAG 1256
consensus_21#1      GAGCTCATAGC-TTGCATTTGCATCGGAGA--TGTGCATGCATTTT-------TTTTTGG 412
                           ***   *  * *** **  ****    **  * ** * *         * * *

consensus_21#0      CAAGAACTTAAGTTATAGAGGTCATAGATTGTTGTGAGC-CATTTACTTGAGTTATGGAG 1315
consensus_21#1      CATTA---TTATTATTATGAGTTGTGATTTGTAACAAGTACATTTCGATGAATAATGGAG 469
                    **  *   * * *  **   **  *   ****    **  *****   *** * ******

consensus_21#0      GTCGT-GCTGGTTTGC-ATGGATCAAGATTCATTGCGATTTTTCCTATCAGATAAAATTC 1373
consensus_21#1      AATACCACAGATTTGTTACTGAAAAAAA-------------------------------- 497
                           * * ****  *  **  ** *                                

consensus_21#0      AATGCGATTTCGT 1386
consensus_21#1      -------------