cluster # 2101

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Oryza sativa
cluster # 2101 cluster # 2101 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2101#0 length = 530 sequences # 1

consensus_2101#1 length = 422 sequences # 1

consensusID : consensus_2101#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence

                              [CAGGCATACCTGCTGACTTGGCATGTTGTCGGACGATGATGAGGATGCATCTGGATCACGGTTACGTCGATGATGGCATCTTGTTCTTCGAAACGGCATGTCGACTTCTGAAACCGGATAGCTTCATCCTGAGTGCTGCATTTCATCTCTATGAACATTCAGGCAGGGAGTCTGAAGCTGGGGATGTCCTAGATGCCATCAATATGAGTGGTGCCTCTTTCTTGCGTAATCCTAAAGGTTGGATCCAAGTTGGAGCAAGTGAGAAATGATACACATGCATCTTGAACCAGCTGTGAGTATCATGTCGGATGAAACCGCTGTTAAAACCGCTCGAGGGAGGCAATATAAACCAGTATTAATAACCGAGTCTAGTTTTTTTTTTTTTTGGTTTGCTATTTTACTTGCGACATATTTTTGGGCTAGTATCTTTCACTTTTTCATATGTAGGATCTTGCATCAAGATTCGTATTATTGTATATCGAACTTTTACACTCGATTACAATGCACCAGAATTAAATTTAAAAAAAAAA]

[+] EMBL BQ908100             [CAGGCATACCTGCTGACTTGGCATGTTGTCGGACGATGATGAGGATGCATCTGGATCACGGTTACGTCGATGATGGCATCTTGTTCTTCGAAACGGCATGTCGACTTCTGAAACCGGATAGCTTCATCCTGAGTGCTGCATTTCATCTCTATGAACATTCAGGCAGGGAGTCTGAAGCTGGGGATGTCCTAGATGCCATCAATATGAGTGGTGCCTCTTTCTTGCGTAATCCTAAAGGTTGGATCCAAGTTGGAGCAAGTGAGAAATGATACACATGCATCTTGAACCAGCTGTGAGTATCATGTCGGATGAAACCGCTGTTAAAACCGCTCGAGGGAGGCAATATAAACCAGTATTAATAACCGAGTCTAGTTTTTTTTTTTTTTGGTTTGCTATTTTACTTGCGACATATTTTTGGGCTAGTATCTTTCACTTTTTCATATGTAGGATCTTGCATCAAGATTCGTATTATTGTATATCGAACTTTTACACTCGATTACAATGCACCAGAATTAAATTTAAAAAAAAAA]




>consensus_2101#0
CAGGCATACCTGCTGACTTGGCATGTTGTCGGACGATGATGAGGATGCATCTGGATCACG
GTTACGTCGATGATGGCATCTTGTTCTTCGAAACGGCATGTCGACTTCTGAAACCGGATA
GCTTCATCCTGAGTGCTGCATTTCATCTCTATGAACATTCAGGCAGGGAGTCTGAAGCTG
GGGATGTCCTAGATGCCATCAATATGAGTGGTGCCTCTTTCTTGCGTAATCCTAAAGGTT
GGATCCAAGTTGGAGCAAGTGAGAAATGATACACATGCATCTTGAACCAGCTGTGAGTAT
CATGTCGGATGAAACCGCTGTTAAAACCGCTCGAGGGAGGCAATATAAACCAGTATTAAT
AACCGAGTCTAGTTTTTTTTTTTTTTGGTTTGCTATTTTACTTGCGACATATTTTTGGGC
TAGTATCTTTCACTTTTTCATATGTAGGATCTTGCATCAAGATTCGTATTATTGTATATC
GAACTTTTACACTCGATTACAATGCACCAGAATTAAATTTAAAAAAAAAA

consensusID : consensus_2101#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [ATTATATTCCAAGAAATGCAGAAAAACAATCATGTGCCTGATTCGCACACATATCTTGCTTTGATCAGAGCATACACTGAGGGTAAATGCTACTCCAAAGCTGAGGAAGCCATCCAGATGATGCTGAGAAGCAACATGACCCCTTCATGCACTCATTTCAACCATCTCATTTCCGCCTTTCTGAAGGAAGGTCAGATTGATGAAGCCCAGAGGATGTACAACCAAATGGAGGAGGCAGGCATACCTGCTGACTTGGCATGTTGTCGGACGATGATGAGGATGCATCTGGATCACGGTTACGTCGATGATGGCATCTTGTTCTTCGAAACGGCATGTCGACTTTTGAACCCGCATACCCTATTCGTGAGCCAAGCATTTCACCTTTAATACCATTCAGGCGGGGAATGTTAACAGGGGGACGT]

[-] EMBL CB628190             [ATTATATTCCAAGAAATGCAGAAAAACAATCATGTGCCTGATTCGCACACATATCTTGCTTTGATCAGAGCATACACTGAGGGTAAATGCTACTCCAAAGCTGAGGAAGCCATCCAGATGATGCTGAGAAGCAACATGACCCCTTCATGCACTCATTTCAACCATCTCATTTCCGCCTTTCTGAAGGAAGGTCAGATTGATGAAGCCCAGAGGATGTACAACCAAATGGAGGAGGCAGGCATACCTGCTGACTTGGCATGTTGTCGGACGATGATGAGGATGCATCTGGATCACGGTTACGTCGATGATGGCATCTTGTTCTTCGAAACGGCATGTCGACTTTTGAACCCGCATACCCTATTCGTGAGCCAAGCATTTCACCTTTAATACCATTCAGGCGGGGAATGTTAACAGGGGGACGT]




>consensus_2101#1
ATTATATTCCAAGAAATGCAGAAAAACAATCATGTGCCTGATTCGCACACATATCTTGCT
TTGATCAGAGCATACACTGAGGGTAAATGCTACTCCAAAGCTGAGGAAGCCATCCAGATG
ATGCTGAGAAGCAACATGACCCCTTCATGCACTCATTTCAACCATCTCATTTCCGCCTTT
CTGAAGGAAGGTCAGATTGATGAAGCCCAGAGGATGTACAACCAAATGGAGGAGGCAGGC
ATACCTGCTGACTTGGCATGTTGTCGGACGATGATGAGGATGCATCTGGATCACGGTTAC
GTCGATGATGGCATCTTGTTCTTCGAAACGGCATGTCGACTTTTGAACCCGCATACCCTA
TTCGTGAGCCAAGCATTTCACCTTTAATACCATTCAGGCGGGGAATGTTAACAGGGGGAC
GT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2101#0      CAGGCATACCTGCTGACTTGGCATGTTGTCGGACGATGATGAGGATGCATCTGGATCACG 60
consensus_2101#1      -----------------------------------------ATTATATTCCAAGAAATGC 19
                                                               *  **    *  **     

consensus_2101#0      GTTACGTCGATGATGGCATCTTGTTCTTCGAAACGGCATGTCGACTTCTGAAACCGGATA 120
consensus_2101#1      AGAAAAACAATCATG-TGCCTGATTCGCACACATATCTTG----CTTTGATCAGAGCATA 74
                         *   * ** ***    **  ***    * *   * **    ***     *  * ***

consensus_2101#0      GCTTCATCCTGAGTGCTGCATTTCATCTCTATGAACATTCAGGCAGGGAGTCTGAAGCTG 180
consensus_2101#1      CACTGAGGGTAAATGCTACTCCAAAGCTGAGGAAGCCATCCAGATGATGCTGAGAAGCAA 134
                         * *   * * **** *     * **     * *  **  *  *    *  *****  

consensus_2101#0      GGGATGTCCTAGATGCCATCAATATGAGTGGTGCCTCTTTCTTGCGTAATCCTAAAGGTT 240
consensus_2101#1      CATGACCCCTTCATGCACTCATTTCAAC-----CATCTCATTTCCGCCTTTCTGAAGGAA 189
                             ***  ****  *** *   *      * ***   ** **   * ** ****  

consensus_2101#0      GGATCCAAGTTGGAGCAAGTGAGAAATGATACACATGCATCTTGAACCAGCTGTGAGTAT 300
consensus_2101#1      GG--TCAGATTGATGAAGCCCAGAG--GATGTACAACCAAATGGAGGAGGCAG-GCATAC 244
                      **   **  ***  * *    ***   ***  ***  **  * **    ** * *  ** 

consensus_2101#0      CATGTCGGATGAAACCGCTGTTAAAACCGCTCGAGGGAGGCAATATAAACCAGTATTAAT 360
consensus_2101#1      C-TGCTGACTTGGCATGTTGTCGGA--CGATGATGAGGATGCATCTGGATCACGGTTAC- 300
                      * **  *  *      * ***   *  ** *   * *     ** *  * **   ***  

consensus_2101#0      AACCGAGTCTAGTTTTTTTTTTTTTTGGTTTGCTATTTTACTTGCGACATATTTTTGGGC 420
consensus_2101#1      -GTCGATGATGGCATCTTGTTCTTC-GAAACGGCATGTCG----------ACTTTTGAAC 348
                         ***   * *  * ** ** **  *    *  ** *            * *****  *

consensus_2101#0      TAGTATCTTTCACTTTTTCATATGTAGGATCTTGCATCAAGATTCGTATTATT-GTATAT 479
consensus_2101#1      CCGCATACCCTA----TTCGTGAGCCAAGCATTTCACCT---TTAATACCATTCAGGCGG 401
                        * **     *    *** *  *       ** ** *    **  **  ***       

consensus_2101#0      CGAACTTTTACACTCGATTACAATGCACCAGAATTAAATTTAAAAAAAAAA 530
consensus_2101#1      GGAATGTTAACAGGGGGACGT------------------------------ 422
                       ***  ** ***   *