These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2102#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [CTTTTTTTTTAAACTGTCTTAATGTCTTACCACCGTGCCACCGTTGACAAGTACGTACATGTCTAAGGGCATCAAGCATGACGAGTAGAATTTACATTTTCCAGACTTCACTACAGTTTATGAACAAAGTTCAAGCCCAAAATCTGTATAATACAGCATGGATGCCTCTACCTACATCTCTGGTTTATTATGAATAGCTGAATTCTTTGGTCTTCGCACCGTTCCTTCCAACATCTCTGGTTTTTGCAATTTGCATTGCCCAGATTGCCTACTCCAGTTTGTGAAAGATGTCAGAAGAGGATATCCGGAAATTATGCACACATCGCCTTTCCAAAATTTTGTACATGACACAGTTTTCATTTGTCCAACGATGAAATGCCATATATCAGATAGAGATAGGCCTGCAACTCTCATGCAAATGAATGCTAGCAAATCGTGGCATGCAGGTCTGCTAGTCTGCTACTGCATCGAAGTTGGAACTTGGAACACAAACTCAAGGTCATCCATGCAAGGGCACTTCAAATTCAGACGGACCTCCCACTATTGTGCACTGAAGCCTGAAGCCGGCAACACTGGAAAAATCGGGAGCACTGGCATGTCACTAACAAACCTGCAGTCGGATGATACTATGGGGACAATTTCTTAGCGATATGCTTAAGGACCGCAACACAATGTCCTGACATTAGAAGC] [+] EMBL CB634879 [CTTTTTTTTTAAACTGTCTTAATGTCTTACCACCGTGCCACCGTTGACAAGTACGTACATGTCTAAGGGCATCAAGCATGACGAGTAGAATTTACATTTTCCAGACTTCACTACAGTTTATGAACAAAGTTCAAGCCCAAAATCTGTATAATACAGCATGGATGCCTCTACCTACATCTCTGGTTTATTATGAATAGCTGAATTCTTTGGTCTTCGCACCGTTCCTTCCAACATCTCTGGTTTTTGCAATTTGCATTGCCCAGATTGCCTACTCCAGTTTGTGAAAGATGTCAGAAGAGGATATCCGGAAATTATGCACACATCGCCTTTCCAAAATTTTGTACATGACACAGTTTTCATTTGTCCAACGATGAAATGCCATATATCAGATAGAGATAGGCCTGCAACTCTCATGCAAATGAATGCTAGCAAATCGTGGCATGCAGGTCTGCTAGTCTGCTACTGCATCGAAGTTGGAACTTGGAACACAAACTCAAGGTCATCCATGCAAGGGCACTTCAAATTCAGACGGACCTCCCACTATTGTGCACTGAAGCCTGAAGCCGGCAACACTGGAAAAATCGGGAGCACTGGCATGTCACTAACAAACCTGCAGTCGGATGATACTATGGGGACAATTTCTTAGCGATATGCTTAAGGACCGCAACACAATGTCCTGACATTAGAAGC] consensusID : consensus_2102#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [TGAACTAAATATAAACTGTCTTAATGTCTTACCACCGTGCCACGGTTGACAAGTACGTACATGTCTAAGGGCATCAAGCATGACGAGTAGAATTTACATTTTCCAGACTTCACTACAGTTTATGAACAAAGTTCAAGCCCAAAATCTGTATAATACAGCATGGATGCCTCTACCTACATCTCTGGTTTATTATAAATAGCTGAATTCTTTGGTCTTCGCACCGTTCCTTCCAACATCTCTGGTTTTTGCAATTTGCATTGCCCAGATTGCCTACTCCAGTTTGTGAAGATGTCAGAAGAGGATATCCGGGAAATTATGGCACACATCGNCCTTTTCCAAAATTTGTTACCATGNACACAGGTTTTCCATTTGGTCCAACGNTNGGNAATGGCCCATTATNTNCAGGNTANGGGNNANGGGCTGGNNAANTCNTNATGGCCAAATGGATGGNCTAGCCAATTCGGTGGGCCATTGCNNGGGCTGNNAANGTTNGNGAACNGGCTTCCGAGTTGGGGANCTTGGNAANNNCAAANTNNAGGGGGNCCCANNAAGGGGGCCTTNAAATTTTGGAANGGGGNNCCCCCCCNCNTTTNGGGNCCTTTAANCCTTAAGGGNG] [+] EMBL BE229012 [TGAACTAAATATAAACTGTCTTAATGTCTTACCACCGTGCCACGGTTGACAAGTACGTACATGTCTAAGGGCATCAAGCATGACGAGTAGAATTTACATTTTCCAGACTTCACTACAGTTTATGAACAAAGTTCAAGCCCAAAATCTGTATAATACAGCATGGATGCCTCTACCTACATCTCTGGTTTATTATAAATAGCTGAATTCTTTGGTCTTCGCACCGTTCCTTCCAACATCTCTGGTTTTTGCAATTTGCATTGCCCAGATTGCCTACTCCAGTTTGTGAAGATGTCAGAAGAGGATATCCGGGAAATTATGGCACACATCGNCCTTTTCCAAAATTTGTTACCATGNACACAGGTTTTCCATTTGGTCCAACGNTNGGNAATGGCCCATTATNTNCAGGNTANGGGNNANGGGCTGGNNAANTCNTNATGGCCAAATGGATGGNCTAGCCAATTCGGTGGGCCATTGCNNGGGCTGNNAANGTTNGNGAACNGGCTTCCGAGTTGGGGANCTTGGNAANNNCAAANTNNAGGGGGNCCCANNAAGGGGGCCTTNAAATTTTGGAANGGGGNNCCCCCCCNCNTTTNGGGNCCTTTAANCCTTAAGGGNG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2102#0 --CTTTTTTTTTAAACTGTCTTAATGTCTTACCACCGTGCCACCGTTGACAAGTACGTAC 58 consensus_2102#1 TGAACTAAATATAAACTGTCTTAATGTCTTACCACCGTGCCACGGTTGACAAGTACGTAC 60 * * ******************************** **************** consensus_2102#0 ATGTCTAAGGGCATCAAGCATGACGAGTAGAATTTACATTTTCCAGACTTCACTACAGTT 118 consensus_2102#1 ATGTCTAAGGGCATCAAGCATGACGAGTAGAATTTACATTTTCCAGACTTCACTACAGTT 120 ************************************************************ consensus_2102#0 TATGAACAAAGTTCAAGCCCAAAATCTGTATAATACAGCATGGATGCCTCTACCTACATC 178 consensus_2102#1 TATGAACAAAGTTCAAGCCCAAAATCTGTATAATACAGCATGGATGCCTCTACCTACATC 180 ************************************************************ consensus_2102#0 TCTGGTTTATTATGAATAGCTGAATTCTTTGGTCTTCGCACCGTTCCTTCCAACATCTCT 238 consensus_2102#1 TCTGGTTTATTATAAATAGCTGAATTCTTTGGTCTTCGCACCGTTCCTTCCAACATCTCT 240 ************* ********************************************** consensus_2102#0 GGTTTTTGCAATTTGCATTGCCCAGATTGCCTACTCCAGTTTGTGAAAGATGTCAGAAGA 298 consensus_2102#1 GGTTTTTGCAATTTGCATTGCCCAGATTGCCTACTCCAGTTTGTGAA-GATGTCAGAAGA 299 *********************************************** ************ consensus_2102#0 GGATATCCGG-AAATTATG-CACACATCGCC--TTTCCAAAATTTTGTAC-ATGA-CACA 352 consensus_2102#1 GGATATCCGGGAAATTATGGCACACATCGNCCTTTTCCAAAATTTGTTACCATGNACACA 359 ********** ******** ********* * ************ *** *** **** consensus_2102#0 G--TTTTCATTTG-TCCAACGATGAAATGCCATATATCAGATAGAGATAGGCCTGCAACT 409 consensus_2102#1 GGTTTTCCATTTGGTCCAACGNTNGGNAATGGCCCATTATNTNCAGGNTANGG-GNNANG 418 * *** ****** ******* * ** * * ** * * consensus_2102#0 CTCATGCAAATGAATGCTAGCAAATCGTGGCATGCAGGTCTGCTAGTCTGCTACTGCATC 469 consensus_2102#1 GGCTGGNNAANTCNTNATGGCCAAATGGATGGNCTAGCCAATTCGGTGGGCCATTGCNNG 478 * * ** * * ** ** * ** ** ** * *** consensus_2102#0 GAAGTTGGAACTTGGAACACAAACTCAAGGTCATCCATGCAAGGGCACTTCAAATTCAGA 529 consensus_2102#1 GGCTGNNAANGTTNGNGAACNGGCTTCCGAGTTGGGGANCTTGGNAANNNCAAANTNNAG 538 * * ** * ** ** * * ** * **** * consensus_2102#0 CGGACCTCCCACTATTGTGCACTGAAGCCTGAAGCCGGCAACACTGGAAAAATCGGGAGC 589 consensus_2102#1 GGGGNCCCANNAAGGGGGCCTTNAAATTTTGGAANGGGGNNCCCCCCCNCNTTTNGGGNC 598 ** * * * * ** ** * ** * * * ** * consensus_2102#0 ACTGGCATGTCACTAACAAACCTGCAGTCGGATGATACTATGGGGACAATTTCTTAGCGA 649 consensus_2102#1 CTTTAANCCTTAAGGGNG------------------------------------------ 616 * * * consensus_2102#0 TATGCTTAAGGACCGCAACACAATGTCCTGACATTAGAAGC 690 consensus_2102#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||