These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [GAGTAGAAAAGAACTTTCTTCTGTCTCAACGTGTGATTTGCTCGTTCGTGTTGATCTTTTTTATCCTGAATCTTGTCAGAGATTGTAAACAAACAACTCAATCTCAGGCGACTTTTCGGCCATTGTTCTGAATTCTGAAGAATATCTCTTCTTGGCTTATATTTTCCAGTGCTAGCTCCAACGATCTGGAGGCTGCATGTTACGCAAAGCTTTGTTTCGATATAGGGTTTGTTGAAACGATAGAGGATGGCGGATCACTTCGCGCTGATGGCTGGTCGGCTGCTCACGGAGTCGACGCTGCAGTCACCGTGCAGGAGGCTCTCGCTGTCGCCTCCGTGAAGATAGTTCATGATCAGCCTGATCTTCCCGTTCATGAAGATGTTCAGGATGGAAAGGCGAAGAGCGGTGTCATGGTGGAATGCAGAATCTGCCAGGAGGAAGGTGACGAGTCCTACATGGAGACCCCTTGCTGCTGCAAGGGCAGCCTCAAGGCAAGTACGCACACCACGCATGCATCCAAAGGGTGGGTGTAATGAGAAGGGAGACACAGTATGCGAGATATGCTTACAGCAATTCACGCCAAACTACAC] [+] EMBL CF337784 [GAGTAGAAAAGAACTTTCTTCTGTCTCAACGTGTGATTTGCTCGTTCGTGTTGATCTTTTTTATCCTGAATCTTGTCAGAGATTGTAAACAAACAACTCAATCTCAGGCGACTTTTCGGCCATTGTTCTGAATTCTGAAGAATATCTCTTCTTGGCTTATATTTTCCAGTGCTAGCTCCAACGATCTGGAGGCTGCATGTTACGCAAAGCTTTGTTTCGATATAGGGTTTGTTGAAACGATAGAGGATGGCGGATCACTTCGCGCTGATGGCTGGTCGGCTGCTCACGGAGTCGACGCTGCAGTCACCGTGCAGGAGGCTCTCGCTGTCGCCTCCGTGAAGATAGTTCATGATCAGCCTGATCTTCCCGTTCATGAAGATGTTCAGGATGGAAAGGCGAAGAGCGGTGTCATGGTGGAATGCAGAATCTGCCAGGAGGAAGGTGACGAGTCCTACATGGAGACCCCTTGCTGCTGCAAGGGCAGCCTCAAGGCAAGTACGCACACCACGCATGCATCCAAAGGGTGGGTGTAATGAGAAGGGAGACACAGTATGCGAGATATGCTTACAGCAATTCACGCCAAACTACAC] consensusID : consensus_2111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [CCCGCCTTGCAAGCCTCCTTGGCTTGTCGCTGCTGCTGCGGCTGCTTCTCTGCTCTCTTTTCTTTGCCCCTGCTCCCTTGCCCACGCCGTCGCCTTTGCATCGCATCCTTGCTTCTTTCTTCGTCCGTGGAGAAAAGCCCGGATCTTTTCAGTACACGCGTGCGTGCAAACTAGTACTCCGTATATCTCGATCGCAACCTCATGGCGTGAGAAAAAGCTCGCGGCTTTTCCTTGCATCGGCTAGCTAATTTGCAGGCCGCACGGCGTTCTCCTCCTCCTCATCCTCCTCCCAGTGCTAGCTCCAACGATCTGGAGGCTGCATGTTACGCAAAGCTTTGTTTCGATATAGGGGTTTGTTGAAACGATAGAGGATGGCGGATCACTTCGCGCTGATGGCTGGTCGGCTGCTCACGGAGTCGACGCTGCAGTCAGCCGTGCAGGAGGCTCTCGCTGTCGCCTCCGTGAAGATAGTTCATGATCAGCCTGATCTTCCCGT] [+] EMBL CF310666 [CCCGCCTTGCAAGCCTCCTTGGCTTGTCGCTGCTGCTGCGGCTGCTTCTCTGCTCTCTTTTCTTTGCCCCTGCTCCCTTGCCCACGCCGTCGCCTTTGCATCGCATCCTTGCTTCTTTCTTCGTCCGTGGAGAAAAGCCCGGATCTTTTCAGTACACGCGTGCGTGCAAACTAGTACTCCGTATATCTCGATCGCAACCTCATGGCGTGAGAAAAAGCTCGCGGCTTTTCCTTGCATCGGCTAGCTAATTTGCAGGCCGCACGGCGTTCTCCTCCTCCTCATCCTCCTCCCAGTGCTAGCTCCAACGATCTGGAGGCTGCATGTTACGCAAAGCTTTGTTTCGATATAGGGGTTTGTTGAAACGATAGAGGATGGCGGATCACTTCGCGCTGATGGCTGGTCGGCTGCTCACGGAGTCGACGCTGCAGTCAGCCGTGCAGGAGGCTCTCGCTGTCGCCTCCGTGAAGATAGTTCATGATCAGCCTGATCTTCCCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2111#0 ------------------------------------------------------------ consensus_2111#1 CCCGCCTTGCAAGCCTCCTTGGCTTGTCGCTGCTGCTGCGGCTGCTTCTCTGCTCTCTTT 60 consensus_2111#0 ------------------------------------------------------------ consensus_2111#1 TCTTTGCCCCTGCTCCCTTGCCCACGCCGTCGCCTTTGCATCGCATCCTTGCTTCTTTCT 120 consensus_2111#0 ----GAGTAGAAAAGAACTTTCTTCTGTCTCAACGTGTGATTTGCTCGTTCGTGTTGATC 56 consensus_2111#1 TCGTCCGTGGAGAAAAGCCCGGATCT-TTTCAGTACACG---CGTGCGTGCAAACTAGTA 176 ** ** ** * * *** * *** * * *** * * * consensus_2111#0 TTT--TTTATCCTGAATCTTGTCAGAGATTGTAAACAAACAACTCAATCTCAGGCGACTT 114 consensus_2111#1 CTCCGTATATCTCGATCGCAACCTCATGGCGTGAG-AAAAAGCTCGCGGCTTTTCCTTGC 235 * * **** ** * * ** * *** * *** * consensus_2111#0 TTCGGCCA-TTGTTCTGAATTCTGAAGAATATCTCTTCTTGGCTTATATT--TTCCAGTG 171 consensus_2111#1 ATCGGCTAGCTAATTTGCAGGCCGCACGGCGTTCTCCTCCTCCTCATCCTCCTCCCAGTG 295 ***** * * * ** * * * * * ** ** * * ****** consensus_2111#0 CTAGCTCCAACGATCTGGAGGCTGCATGTTACGCAAAGCTTTGTTTCGATATAGGG-TTT 230 consensus_2111#1 CTAGCTCCAACGATCTGGAGGCTGCATGTTACGCAAAGCTTTGTTTCGATATAGGGGTTT 355 ******************************************************** *** consensus_2111#0 GTTGAAACGATAGAGGATGGCGGATCACTTCGCGCTGATGGCTGGTCGGCTGCTCACGGA 290 consensus_2111#1 GTTGAAACGATAGAGGATGGCGGATCACTTCGCGCTGATGGCTGGTCGGCTGCTCACGGA 415 ************************************************************ consensus_2111#0 GTCGACGCTGCAGTCA-CCGTGCAGGAGGCTCTCGCTGTCGCCTCCGTGAAGATAGTTCA 349 consensus_2111#1 GTCGACGCTGCAGTCAGCCGTGCAGGAGGCTCTCGCTGTCGCCTCCGTGAAGATAGTTCA 475 **************** ******************************************* consensus_2111#0 TGATCAGCCTGATCTTCCCGTTCATGAAGATGTTCAGGATGGAAAGGCGAAGAGCGGTGT 409 consensus_2111#1 TGATCAGCCTGATCTTCCCGT--------------------------------------- 496 ********************* consensus_2111#0 CATGGTGGAATGCAGAATCTGCCAGGAGGAAGGTGACGAGTCCTACATGGAGACCCCTTG 469 consensus_2111#1 ------------------------------------------------------------ consensus_2111#0 CTGCTGCAAGGGCAGCCTCAAGGCAAGTACGCACACCACGCATGCATCCAAAGGGTGGGT 529 consensus_2111#1 ------------------------------------------------------------ consensus_2111#0 GTAATGAGAAGGGAGACACAGTATGCGAGATATGCTTACAGCAATTCACGCCAAACTACA 589 consensus_2111#1 ------------------------------------------------------------ consensus_2111#0 C 590 consensus_2111#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||