These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [TTGGGGTTCACCGAGGTCCGTCGGCAGCGCGCTCTAACACGTGGTTCCGCACCTGGCAATGCTCTTCCCGGGCCGCACCTCTTCGCCGGCGCCAGCCATCACCGTGCTCTGGGCCAGCCGCGGCGGCGCTGTCCCGGCGATGCAGAAGGGGAACGAGACGGCGCGGAGCCTGCACATCGCGCTCAACGCCTATCAACGTGCCTGCCTCTTGCAATGCTGGCAGATGCCCCACCGGCCTCGAGATCGTCGGCAAGGTGCTNTCGAGTTCACCACATGGGCCAATGGAACAAAACAAACACAACACAACTACAAATGCAGTGGCTGCAAATGTGCCATTGCTGCCTGCTTGAATTAAGGGTGTTGTCTTTTTGGACTGCCCATNAGCCGATGCTTGGCGTGGTGGTTGCAAGCTGGCTTGCAACCTTCCACAGTGTTCATTGGTTCGTCCCTGTTCAAAAAATATAGTGAATGAATGACATGAAAGAATTCAGATGTGCAA] [+] EMBL BQ907450 [TTGGGGTTCACCGAGGTCCGTCGGCAGCGCGCTCTAACACGTGGTTCCGCACCTGGCAATGCTCTTCCCGGGCCGCACCTCTTCGCCGGCGCCAGCCATCACCGTGCTCTGGGCCAGCCGCGGCGGCGCTGTCCCGGCGATGCAGAAGGGGAACGAGACGGCGCGGAGCCTGCACATCGCGCTCAACGCCTATCAACGTGCCTGCCTCTTGCAATGCTGGCAGATGCCCCACCGGCCTCGAGATCGTCGGCAAGGTGCTNTCGAGTTCACCACATGGGCCAATGGAACAAAACAAACACAACACAACTACAAATGCAGTGGCTGCAAATGTGCCATTGCTGCCTGCTTGAATTAAGGGTGTTGTCTTTTTGGACTGCCCATNAGCCGATGCTTGGCGTGGTGGTTGCAAGCTGGCTTGCAACCTTCCACAGTGTTCATTGGTTCGTCCCTGTTCAAAAAATATAGTGAATGAATGACATGAAAGAATTCAGATGTGCAA] consensusID : consensus_2118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [TTCGAGTTCACCACATGGCCATGAACAAACAACACAACACAACACAATGCAGTGCTGCAATTCCATTCTCCTCTTAATTAGGTTTTCTTTTGACTCCATAGCCGATCTTGCGTGTGTTCACTGCTTCACCTTCCACAGTGTTCATTGGTTCGTCCCCTGTTCAAAAAATATAGTGAATGAATGACATGAAAGAATTCAGATGTGCAAACGGTTTGAATTCTTAAAAAAAAAA] [+] EMBL BQ908554 [TTCGAGTTCACCACATGGCCATGAACAAACAACACAACACAACACAATGCAGTGCTGCAATTCCATTCTCCTCTTAATTAGGTTTTCTTTTGACTCCATAGCCGATCTTGCGTGTGTTCACTGCTTCACCTTCCACAGTGTTCATTGGTTCGTCCCCTGTTCAAAAAATATAGTGAATGAATGACATGAAAGAATTCAGATGTGCAAACGGTTTGAATTCTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2118#0 TTGGGGTTCACCGAGGTCCGTCGGCAGCGCGCTCTAACACGTGGTTCCGCACCTGGCAAT 60 consensus_2118#1 ------------------------------------------------------------ consensus_2118#0 GCTCTTCCCGGGCCGCACCTCTTCGCCGGCGCCAGCCATCACCGTGCTCTGGGCCAGCCG 120 consensus_2118#1 ------------------------------------------------------------ consensus_2118#0 CGGCGGCGCTGTCCCGGCGATGCAGAAGGGGAACGAGACGGCGCGGAGCCTGCACATCGC 180 consensus_2118#1 ------------------------------------------------------------ consensus_2118#0 GCTCAACGCCTATCAACGTGCCTGCCTCTTGCAATGCTGGCAGATGCCCCACCGGCCTCG 240 consensus_2118#1 ------------------------------------------------------------ consensus_2118#0 AGATCGTCGGCAAGGTGCTNTCGAGTTCACCACATGGGCCAATGGAACAAAACAAACACA 300 consensus_2118#1 -------------------TTCGAGTTCACCACATGG--CCATG-AACAAA--CAACACA 36 ***************** * *** ****** ****** consensus_2118#0 ACACAACTACAAATGCAGTGGCTGCAAATGTGCCATTGCTGCCTGCTTGAATTAAGGGTG 360 consensus_2118#1 ACACAAC-ACAA-TGCAGTG-CTGCAA---TTCCATT----CTCCTCTTAATTAGG---- 82 ******* **** ******* ****** * ***** * * ***** * consensus_2118#0 TTGTCTTTTTGGACTGCCCATNAGCCGATGCTTGGCGTGGTGGTTGCAAGCTGGCTTGCA 420 consensus_2118#1 TTTTCTTTT--GACT--CCATA-GCCGATCTTGCGTGTGTTCACTGCT----------TC 127 ** ****** **** **** ****** * * *** * *** consensus_2118#0 ACCTTCCACAGTGTTCATTGGTTCGTCCC-TGTTCAAAAAATATAGTGAATGAATGACAT 479 consensus_2118#1 ACCTTCCACAGTGTTCATTGGTTCGTCCCCTGTTCAAAAAATATAGTGAATGAATGACAT 187 ***************************** ****************************** consensus_2118#0 GAAAGAATTCAGATGTGCAA------------------------- 499 consensus_2118#1 GAAAGAATTCAGATGTGCAAACGGTTTGAATTCTTAAAAAAAAAA 232 ******************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||