These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1290 fasta sequence [CTCGCCGCCGCCCGCCTGTTTTCTCGGTCGCGTGCTAGTCGCCCTGAGAAGAAGACCCGCTACAGTAGGGCTCCAAAATCCAATCCTCCGATGATGGCTCATCTGGCGCCGCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCCGCTCCACGCCGCCGCCACGCCGTCCGCCCACCCGGCCTACCCCAACGAGCCGCCGTCCTGCGCGGCGGCGGTGCCGGTGCCGGAGCGGCGGGAGGCGCATGGCGGGGGGCGCATCCTGGACATAACCCACTACTACCGGGAGGACATGCCGTCGTGGGAGTCGGACGGCGGGGTCGGCCAATTCCTGTGGCTCCCCGCCTCCATGCGCAACGGTTCCCGCGCCAACAACTCCGAGATGCGCCTGCCCACCCACACCGGCACCCACGTAGACGCCCCGGGCCACGTCTTCCAGCACTACTTCGACGCCGGCTTCGACGTCGACTCCCTCGACCTCGAAGTGCTCAATGGTCTGGCATTGTTAGTTGATGTTCCAAGAGATGATAATATTACAGCTAAAATGATGGAATCATTACATATTCCTAAAGGAATTCAACGAGTGCTATTTAGAACACTAAATACTGACAGGCAACTAATGTGGAAGAAAGAATTTGACACTAGTTATGTGGGTTTTATGGAGGATGGCGCACAATGGTTGGTAGACAACACAGATATTAAACTTGTCGGAATAGACTATTTGTCTGTTGCAGCTTTTGATGACTTGATCCCGTCACATTTAGTTCTTCTCAAAAACAGGGATATCATTCTTGTCGAGGGCCTCAAACTGGAAAATATCATGCCTGGGATATACTCCTTGCACTGCCTGCCACTTCGGCTGCGGGGTGCTGAAGGTTCACCAATCAGATGCATCCTTATAAAGTGAAGGGGACTAGGATCAGTGCGTTTGCTAGTATCAATGCAACTTCAGTTGCACTGGATCACTGCATGATGCAGGTCTGCCAAATAAAATTGTGTCATGTCGGTGCTAAGCTCTTGGACTTGGAAGCTGTACAGCATAGTCGTAAAACACACAACTATCGATGAACTGCACAATGGGCACATTCTGCGACTTCTCTTTTGAACAAACTCAATTGAAGTTTAGGGCCCCTTTGATTTGTATGAAAAATGTAGGAATTTTGGAGGATTTCAATTCTATGAAGGCCTTTGAAATAAAGAATTGAATCATATCCAATTCTTTAAAATTCCTATGGAATAGGTAATTCTATGTACATTTTGAAGGAAAGTTAGTAAGAGGTCTAACCTCCAAGTC] [+] EMBL AK108030 [CTCGCCGCCGCCCGCCTGTTTTCTCGGTCGCGTGCTAGTCGCCCTGAGAAGAAGACCCGCTACAGTAGGGCTCCAAAATCCAATCCTCCGATGATGGCTCATCTGGCGCCGCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCCGCTCCACGCCGCCGCCACGCCGTCCGCCCACCCGGCCTACCCCAACGAGCCGCCGTCCTGCGCGGCGGCGGTGCCGGTGCCGGAGCGGCGGGAGGCGCATGGCGGGGGGCGCATCCTGGACATAACCCACTACTACCGGGAGGACATGCCGTCGTGGGAGTCGGACGGCGGGGTCGGCCAATTCCTGTGGCTCCCCGCCTCCATGCGCAACGGTTCCCGCGCCAACAACTCCGAGATGCGCCTGCCCACCCACACCGGCACCCACGTAGACGCCCCGGGCCACGTCTTCCAGCACTACTTCGACGCCGGCTTCGACGTCGACTCCCTCGACCTCGAAGTGCTCAATGGTCTGGCATTGTTAGTTGATGTTCCAAGAGATGATAATATTACAGCTAAAATGATGGAATCATTACATATTCCTAAAGGAATTCAACGAGTGCTATTTAGAACACTAAATACTGACAGGCAACTAATGTGGAAGAAAGAATTTGACACTAGTTATGTGGGTTTTATGGAGGATGGCGCACAATGGTTGGTAGACAACACAGATATTAAACTTGTCGGAATAGACTATTTGTCTGTTGCAGCTTTTGATGACTTGATCCCGTCACATTTAGTTCTTCTCAAAAACAGGGATATCATTCTTGTCGAGGGCCTCAAACTGGAAAATATCATGCCTGGGATATACTCCTTGCACTGCCTGCCACTTCGGCTGCGGGGTGCTGAAGGTTCACCAATCAGATGCATCCTTATAAAGTGAAGGGGACTAGGATCAGTGCGTTTGCTAGTATCAATGCAACTTCAGTTGCACTGGATCACTGCATGATGCAGGTCTGCCAAATAAAATTGTGTCATGTCGGTGCTAAGCTCTTGGACTTGGAAGCTGTACAGCATAGTCGTAAAACACACAACTATCGATGAACTGCACAATGGGCACATTCTGCGACTTCTCTTTTGAACAAACTCAATTGAAGTTTAGGGCCCCTTTGATTTGTATGAAAAATGTAGGAATTTTGGAGGATTTCAATTCTATGAAGGCCTTTGAAATAAAGAATTGAATCATATCCAATTCTTTAAAATTCCTATGGAATAGGTAATTCTATGTACATTTTGAAGGAAAGTTAGTAAGAGGTCTAACCTCCAAGTC] consensusID : consensus_2121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [AGGGCTCCAAAATCCAATCCTCCGATGATGGCTCATCTGGCGCCGCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCCGCTCCACGCCGCCGCCACGCCGTCCCGCCCACCCGGCCTACCCCAACGAGCCGCCGTCCTGCGCGGCGGCGGCGGCGGCGGCGGTGCCGGTGCCGGAGCGGCGGGAGGCGCATGGCGGGGGGCGCATCCTGGACATAACCCACTACTACCGGGAGGACATGCCGTCGTGGGAGTCGGACGGCGGGGTCGGCCAATTCCTGTGGCTCCCCGCCTCCATGCGCAACGGTTCCCGCGCCAACAACTCCGAGATGCGCCTGCCCACCCACACCGGCACCCACGTAGACGCCCCGGGCCACGTCTTTCAGCACTACTTCGACGCCGGCTTCGACGTCGACTCCCTCGACCTCGAAGTGGTCAATGGTCTGGCATTGTTAGTTGATGTNCCCAAGAGATGATAATATTACAGCTAAAATGATGGAATCATTACATATTCCTAAGGGAATTCAACAGTG] [+] EMBL BE040915 [AGGGCTCCAAAATCCAATCCTCCGATGATGGCTCATCTGGCGCCGCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCCGCTCCACGCCGCCGCCACGCCGTCCCGCCCACCCGGCCTACCCCAACGAGCCGCCGTCCTGCGCGGCGGCGGCGGCGGCGGCGGTGCCGGTGCCGGAGCGGCGGGAGGCGCATGGCGGGGGGCGCATCCTGGACATAACCCACTACTACCGGGAGGACATGCCGTCGTGGGAGTCGGACGGCGGGGTCGGCCAATTCCTGTGGCTCCCCGCCTCCATGCGCAACGGTTCCCGCGCCAACAACTCCGAGATGCGCCTGCCCACCCACACCGGCACCCACGTAGACGCCCCGGGCCACGTCTTTCAGCACTACTTCGACGCCGGCTTCGACGTCGACTCCCTCGACCTCGAAGTGGTCAATGGTCTGGCATTGTTAGTTGATGTNCCCAAGAGATGATAATATTACAGCTAAAATGATGGAATCATTACATATTCCTAAGGGAATTCAACAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2121#0 CTCGCCGCCGCCCGCCTGTTTTCTCGGTCGCGTGCTAGTCGCCCTGAGAAGAAGACCCGC 60 consensus_2121#1 ------------------------------------------------------------ consensus_2121#0 TACAGTAGGGCTCCAAAATCCAATCCTCCGATGATGGCTCATCTGGCGCCGCTCTTCCTC 120 consensus_2121#1 ------AGGGCTCCAAAATCCAATCCTCCGATGATGGCTCATCTGGCGCCGCTCTTCCTC 54 ****************************************************** consensus_2121#0 CTCCTCCTCCTCCTCCTCCTCCCGCTCCACGCCGCCGCCACGCCGTCC-GCCCACCCGGC 179 consensus_2121#1 CTCCTCCTCCTCCTCCTCCTCCCGCTCCACGCCGCCGCCACGCCGTCCCGCCCACCCGGC 114 ************************************************ *********** consensus_2121#0 CTACCCCAACGAGCCGCCGTCCTGCGCGGCGGCGG------------TGCCGGTGCCGGA 227 consensus_2121#1 CTACCCCAACGAGCCGCCGTCCTGCGCGGCGGCGGCGGCGGCGGCGGTGCCGGTGCCGGA 174 *********************************** ************* consensus_2121#0 GCGGCGGGAGGCGCATGGCGGGGGGCGCATCCTGGACATAACCCACTACTACCGGGAGGA 287 consensus_2121#1 GCGGCGGGAGGCGCATGGCGGGGGGCGCATCCTGGACATAACCCACTACTACCGGGAGGA 234 ************************************************************ consensus_2121#0 CATGCCGTCGTGGGAGTCGGACGGCGGGGTCGGCCAATTCCTGTGGCTCCCCGCCTCCAT 347 consensus_2121#1 CATGCCGTCGTGGGAGTCGGACGGCGGGGTCGGCCAATTCCTGTGGCTCCCCGCCTCCAT 294 ************************************************************ consensus_2121#0 GCGCAACGGTTCCCGCGCCAACAACTCCGAGATGCGCCTGCCCACCCACACCGGCACCCA 407 consensus_2121#1 GCGCAACGGTTCCCGCGCCAACAACTCCGAGATGCGCCTGCCCACCCACACCGGCACCCA 354 ************************************************************ consensus_2121#0 CGTAGACGCCCCGGGCCACGTCTTCCAGCACTACTTCGACGCCGGCTTCGACGTCGACTC 467 consensus_2121#1 CGTAGACGCCCCGGGCCACGTCTTTCAGCACTACTTCGACGCCGGCTTCGACGTCGACTC 414 ************************ *********************************** consensus_2121#0 CCTCGACCTCGAAGTGCTCAATGGTCTGGCATTGTTAGTTGATGTTCC-AAGAGATGATA 526 consensus_2121#1 CCTCGACCTCGAAGTGGTCAATGGTCTGGCATTGTTAGTTGATGTNCCCAAGAGATGATA 474 **************** **************************** ** *********** consensus_2121#0 ATATTACAGCTAAAATGATGGAATCATTACATATTCCTAAAGGAATTCAACGAGTGCTAT 586 consensus_2121#1 ATATTACAGCTAAAATGATGGAATCATTACATATTCCTAAGGGAATTCAAC-AGTG---- 529 **************************************** ********** **** consensus_2121#0 TTAGAACACTAAATACTGACAGGCAACTAATGTGGAAGAAAGAATTTGACACTAGTTATG 646 consensus_2121#1 ------------------------------------------------------------ consensus_2121#0 TGGGTTTTATGGAGGATGGCGCACAATGGTTGGTAGACAACACAGATATTAAACTTGTCG 706 consensus_2121#1 ------------------------------------------------------------ consensus_2121#0 GAATAGACTATTTGTCTGTTGCAGCTTTTGATGACTTGATCCCGTCACATTTAGTTCTTC 766 consensus_2121#1 ------------------------------------------------------------ consensus_2121#0 TCAAAAACAGGGATATCATTCTTGTCGAGGGCCTCAAACTGGAAAATATCATGCCTGGGA 826 consensus_2121#1 ------------------------------------------------------------ consensus_2121#0 TATACTCCTTGCACTGCCTGCCACTTCGGCTGCGGGGTGCTGAAGGTTCACCAATCAGAT 886 consensus_2121#1 ------------------------------------------------------------ consensus_2121#0 GCATCCTTATAAAGTGAAGGGGACTAGGATCAGTGCGTTTGCTAGTATCAATGCAACTTC 946 consensus_2121#1 ------------------------------------------------------------ consensus_2121#0 AGTTGCACTGGATCACTGCATGATGCAGGTCTGCCAAATAAAATTGTGTCATGTCGGTGC 1006 consensus_2121#1 ------------------------------------------------------------ consensus_2121#0 TAAGCTCTTGGACTTGGAAGCTGTACAGCATAGTCGTAAAACACACAACTATCGATGAAC 1066 consensus_2121#1 ------------------------------------------------------------ consensus_2121#0 TGCACAATGGGCACATTCTGCGACTTCTCTTTTGAACAAACTCAATTGAAGTTTAGGGCC 1126 consensus_2121#1 ------------------------------------------------------------ consensus_2121#0 CCTTTGATTTGTATGAAAAATGTAGGAATTTTGGAGGATTTCAATTCTATGAAGGCCTTT 1186 consensus_2121#1 ------------------------------------------------------------ consensus_2121#0 GAAATAAAGAATTGAATCATATCCAATTCTTTAAAATTCCTATGGAATAGGTAATTCTAT 1246 consensus_2121#1 ------------------------------------------------------------ consensus_2121#0 GTACATTTTGAAGGAAAGTTAGTAAGAGGTCTAACCTCCAAGTC 1290 consensus_2121#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||