cluster # 2121

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Oryza sativa
cluster # 2121 cluster # 2121 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2121#0 length = 1290 sequences # 1

consensus_2121#1 length = 529 sequences # 1

consensusID : consensus_2121#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1290
fasta sequence

                              [CTCGCCGCCGCCCGCCTGTTTTCTCGGTCGCGTGCTAGTCGCCCTGAGAAGAAGACCCGCTACAGTAGGGCTCCAAAATCCAATCCTCCGATGATGGCTCATCTGGCGCCGCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCCGCTCCACGCCGCCGCCACGCCGTCCGCCCACCCGGCCTACCCCAACGAGCCGCCGTCCTGCGCGGCGGCGGTGCCGGTGCCGGAGCGGCGGGAGGCGCATGGCGGGGGGCGCATCCTGGACATAACCCACTACTACCGGGAGGACATGCCGTCGTGGGAGTCGGACGGCGGGGTCGGCCAATTCCTGTGGCTCCCCGCCTCCATGCGCAACGGTTCCCGCGCCAACAACTCCGAGATGCGCCTGCCCACCCACACCGGCACCCACGTAGACGCCCCGGGCCACGTCTTCCAGCACTACTTCGACGCCGGCTTCGACGTCGACTCCCTCGACCTCGAAGTGCTCAATGGTCTGGCATTGTTAGTTGATGTTCCAAGAGATGATAATATTACAGCTAAAATGATGGAATCATTACATATTCCTAAAGGAATTCAACGAGTGCTATTTAGAACACTAAATACTGACAGGCAACTAATGTGGAAGAAAGAATTTGACACTAGTTATGTGGGTTTTATGGAGGATGGCGCACAATGGTTGGTAGACAACACAGATATTAAACTTGTCGGAATAGACTATTTGTCTGTTGCAGCTTTTGATGACTTGATCCCGTCACATTTAGTTCTTCTCAAAAACAGGGATATCATTCTTGTCGAGGGCCTCAAACTGGAAAATATCATGCCTGGGATATACTCCTTGCACTGCCTGCCACTTCGGCTGCGGGGTGCTGAAGGTTCACCAATCAGATGCATCCTTATAAAGTGAAGGGGACTAGGATCAGTGCGTTTGCTAGTATCAATGCAACTTCAGTTGCACTGGATCACTGCATGATGCAGGTCTGCCAAATAAAATTGTGTCATGTCGGTGCTAAGCTCTTGGACTTGGAAGCTGTACAGCATAGTCGTAAAACACACAACTATCGATGAACTGCACAATGGGCACATTCTGCGACTTCTCTTTTGAACAAACTCAATTGAAGTTTAGGGCCCCTTTGATTTGTATGAAAAATGTAGGAATTTTGGAGGATTTCAATTCTATGAAGGCCTTTGAAATAAAGAATTGAATCATATCCAATTCTTTAAAATTCCTATGGAATAGGTAATTCTATGTACATTTTGAAGGAAAGTTAGTAAGAGGTCTAACCTCCAAGTC]

[+] EMBL AK108030             [CTCGCCGCCGCCCGCCTGTTTTCTCGGTCGCGTGCTAGTCGCCCTGAGAAGAAGACCCGCTACAGTAGGGCTCCAAAATCCAATCCTCCGATGATGGCTCATCTGGCGCCGCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCCGCTCCACGCCGCCGCCACGCCGTCCGCCCACCCGGCCTACCCCAACGAGCCGCCGTCCTGCGCGGCGGCGGTGCCGGTGCCGGAGCGGCGGGAGGCGCATGGCGGGGGGCGCATCCTGGACATAACCCACTACTACCGGGAGGACATGCCGTCGTGGGAGTCGGACGGCGGGGTCGGCCAATTCCTGTGGCTCCCCGCCTCCATGCGCAACGGTTCCCGCGCCAACAACTCCGAGATGCGCCTGCCCACCCACACCGGCACCCACGTAGACGCCCCGGGCCACGTCTTCCAGCACTACTTCGACGCCGGCTTCGACGTCGACTCCCTCGACCTCGAAGTGCTCAATGGTCTGGCATTGTTAGTTGATGTTCCAAGAGATGATAATATTACAGCTAAAATGATGGAATCATTACATATTCCTAAAGGAATTCAACGAGTGCTATTTAGAACACTAAATACTGACAGGCAACTAATGTGGAAGAAAGAATTTGACACTAGTTATGTGGGTTTTATGGAGGATGGCGCACAATGGTTGGTAGACAACACAGATATTAAACTTGTCGGAATAGACTATTTGTCTGTTGCAGCTTTTGATGACTTGATCCCGTCACATTTAGTTCTTCTCAAAAACAGGGATATCATTCTTGTCGAGGGCCTCAAACTGGAAAATATCATGCCTGGGATATACTCCTTGCACTGCCTGCCACTTCGGCTGCGGGGTGCTGAAGGTTCACCAATCAGATGCATCCTTATAAAGTGAAGGGGACTAGGATCAGTGCGTTTGCTAGTATCAATGCAACTTCAGTTGCACTGGATCACTGCATGATGCAGGTCTGCCAAATAAAATTGTGTCATGTCGGTGCTAAGCTCTTGGACTTGGAAGCTGTACAGCATAGTCGTAAAACACACAACTATCGATGAACTGCACAATGGGCACATTCTGCGACTTCTCTTTTGAACAAACTCAATTGAAGTTTAGGGCCCCTTTGATTTGTATGAAAAATGTAGGAATTTTGGAGGATTTCAATTCTATGAAGGCCTTTGAAATAAAGAATTGAATCATATCCAATTCTTTAAAATTCCTATGGAATAGGTAATTCTATGTACATTTTGAAGGAAAGTTAGTAAGAGGTCTAACCTCCAAGTC]




>consensus_2121#0
CTCGCCGCCGCCCGCCTGTTTTCTCGGTCGCGTGCTAGTCGCCCTGAGAAGAAGACCCGC
TACAGTAGGGCTCCAAAATCCAATCCTCCGATGATGGCTCATCTGGCGCCGCTCTTCCTC
CTCCTCCTCCTCCTCCTCCTCCCGCTCCACGCCGCCGCCACGCCGTCCGCCCACCCGGCC
TACCCCAACGAGCCGCCGTCCTGCGCGGCGGCGGTGCCGGTGCCGGAGCGGCGGGAGGCG
CATGGCGGGGGGCGCATCCTGGACATAACCCACTACTACCGGGAGGACATGCCGTCGTGG
GAGTCGGACGGCGGGGTCGGCCAATTCCTGTGGCTCCCCGCCTCCATGCGCAACGGTTCC
CGCGCCAACAACTCCGAGATGCGCCTGCCCACCCACACCGGCACCCACGTAGACGCCCCG
GGCCACGTCTTCCAGCACTACTTCGACGCCGGCTTCGACGTCGACTCCCTCGACCTCGAA
GTGCTCAATGGTCTGGCATTGTTAGTTGATGTTCCAAGAGATGATAATATTACAGCTAAA
ATGATGGAATCATTACATATTCCTAAAGGAATTCAACGAGTGCTATTTAGAACACTAAAT
ACTGACAGGCAACTAATGTGGAAGAAAGAATTTGACACTAGTTATGTGGGTTTTATGGAG
GATGGCGCACAATGGTTGGTAGACAACACAGATATTAAACTTGTCGGAATAGACTATTTG
TCTGTTGCAGCTTTTGATGACTTGATCCCGTCACATTTAGTTCTTCTCAAAAACAGGGAT
ATCATTCTTGTCGAGGGCCTCAAACTGGAAAATATCATGCCTGGGATATACTCCTTGCAC
TGCCTGCCACTTCGGCTGCGGGGTGCTGAAGGTTCACCAATCAGATGCATCCTTATAAAG
TGAAGGGGACTAGGATCAGTGCGTTTGCTAGTATCAATGCAACTTCAGTTGCACTGGATC
ACTGCATGATGCAGGTCTGCCAAATAAAATTGTGTCATGTCGGTGCTAAGCTCTTGGACT
TGGAAGCTGTACAGCATAGTCGTAAAACACACAACTATCGATGAACTGCACAATGGGCAC
ATTCTGCGACTTCTCTTTTGAACAAACTCAATTGAAGTTTAGGGCCCCTTTGATTTGTAT
GAAAAATGTAGGAATTTTGGAGGATTTCAATTCTATGAAGGCCTTTGAAATAAAGAATTG
AATCATATCCAATTCTTTAAAATTCCTATGGAATAGGTAATTCTATGTACATTTTGAAGG
AAAGTTAGTAAGAGGTCTAACCTCCAAGTC

consensusID : consensus_2121#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 529
fasta sequence

                              [AGGGCTCCAAAATCCAATCCTCCGATGATGGCTCATCTGGCGCCGCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCCGCTCCACGCCGCCGCCACGCCGTCCCGCCCACCCGGCCTACCCCAACGAGCCGCCGTCCTGCGCGGCGGCGGCGGCGGCGGCGGTGCCGGTGCCGGAGCGGCGGGAGGCGCATGGCGGGGGGCGCATCCTGGACATAACCCACTACTACCGGGAGGACATGCCGTCGTGGGAGTCGGACGGCGGGGTCGGCCAATTCCTGTGGCTCCCCGCCTCCATGCGCAACGGTTCCCGCGCCAACAACTCCGAGATGCGCCTGCCCACCCACACCGGCACCCACGTAGACGCCCCGGGCCACGTCTTTCAGCACTACTTCGACGCCGGCTTCGACGTCGACTCCCTCGACCTCGAAGTGGTCAATGGTCTGGCATTGTTAGTTGATGTNCCCAAGAGATGATAATATTACAGCTAAAATGATGGAATCATTACATATTCCTAAGGGAATTCAACAGTG]

[+] EMBL BE040915             [AGGGCTCCAAAATCCAATCCTCCGATGATGGCTCATCTGGCGCCGCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCCGCTCCACGCCGCCGCCACGCCGTCCCGCCCACCCGGCCTACCCCAACGAGCCGCCGTCCTGCGCGGCGGCGGCGGCGGCGGCGGTGCCGGTGCCGGAGCGGCGGGAGGCGCATGGCGGGGGGCGCATCCTGGACATAACCCACTACTACCGGGAGGACATGCCGTCGTGGGAGTCGGACGGCGGGGTCGGCCAATTCCTGTGGCTCCCCGCCTCCATGCGCAACGGTTCCCGCGCCAACAACTCCGAGATGCGCCTGCCCACCCACACCGGCACCCACGTAGACGCCCCGGGCCACGTCTTTCAGCACTACTTCGACGCCGGCTTCGACGTCGACTCCCTCGACCTCGAAGTGGTCAATGGTCTGGCATTGTTAGTTGATGTNCCCAAGAGATGATAATATTACAGCTAAAATGATGGAATCATTACATATTCCTAAGGGAATTCAACAGTG]




>consensus_2121#1
AGGGCTCCAAAATCCAATCCTCCGATGATGGCTCATCTGGCGCCGCTCTTCCTCCTCCTC
CTCCTCCTCCTCCTCCCGCTCCACGCCGCCGCCACGCCGTCCCGCCCACCCGGCCTACCC
CAACGAGCCGCCGTCCTGCGCGGCGGCGGCGGCGGCGGCGGTGCCGGTGCCGGAGCGGCG
GGAGGCGCATGGCGGGGGGCGCATCCTGGACATAACCCACTACTACCGGGAGGACATGCC
GTCGTGGGAGTCGGACGGCGGGGTCGGCCAATTCCTGTGGCTCCCCGCCTCCATGCGCAA
CGGTTCCCGCGCCAACAACTCCGAGATGCGCCTGCCCACCCACACCGGCACCCACGTAGA
CGCCCCGGGCCACGTCTTTCAGCACTACTTCGACGCCGGCTTCGACGTCGACTCCCTCGA
CCTCGAAGTGGTCAATGGTCTGGCATTGTTAGTTGATGTNCCCAAGAGATGATAATATTA
CAGCTAAAATGATGGAATCATTACATATTCCTAAGGGAATTCAACAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2121#0      CTCGCCGCCGCCCGCCTGTTTTCTCGGTCGCGTGCTAGTCGCCCTGAGAAGAAGACCCGC 60
consensus_2121#1      ------------------------------------------------------------
                                                                                  

consensus_2121#0      TACAGTAGGGCTCCAAAATCCAATCCTCCGATGATGGCTCATCTGGCGCCGCTCTTCCTC 120
consensus_2121#1      ------AGGGCTCCAAAATCCAATCCTCCGATGATGGCTCATCTGGCGCCGCTCTTCCTC 54
                            ******************************************************

consensus_2121#0      CTCCTCCTCCTCCTCCTCCTCCCGCTCCACGCCGCCGCCACGCCGTCC-GCCCACCCGGC 179
consensus_2121#1      CTCCTCCTCCTCCTCCTCCTCCCGCTCCACGCCGCCGCCACGCCGTCCCGCCCACCCGGC 114
                      ************************************************ ***********

consensus_2121#0      CTACCCCAACGAGCCGCCGTCCTGCGCGGCGGCGG------------TGCCGGTGCCGGA 227
consensus_2121#1      CTACCCCAACGAGCCGCCGTCCTGCGCGGCGGCGGCGGCGGCGGCGGTGCCGGTGCCGGA 174
                      ***********************************            *************

consensus_2121#0      GCGGCGGGAGGCGCATGGCGGGGGGCGCATCCTGGACATAACCCACTACTACCGGGAGGA 287
consensus_2121#1      GCGGCGGGAGGCGCATGGCGGGGGGCGCATCCTGGACATAACCCACTACTACCGGGAGGA 234
                      ************************************************************

consensus_2121#0      CATGCCGTCGTGGGAGTCGGACGGCGGGGTCGGCCAATTCCTGTGGCTCCCCGCCTCCAT 347
consensus_2121#1      CATGCCGTCGTGGGAGTCGGACGGCGGGGTCGGCCAATTCCTGTGGCTCCCCGCCTCCAT 294
                      ************************************************************

consensus_2121#0      GCGCAACGGTTCCCGCGCCAACAACTCCGAGATGCGCCTGCCCACCCACACCGGCACCCA 407
consensus_2121#1      GCGCAACGGTTCCCGCGCCAACAACTCCGAGATGCGCCTGCCCACCCACACCGGCACCCA 354
                      ************************************************************

consensus_2121#0      CGTAGACGCCCCGGGCCACGTCTTCCAGCACTACTTCGACGCCGGCTTCGACGTCGACTC 467
consensus_2121#1      CGTAGACGCCCCGGGCCACGTCTTTCAGCACTACTTCGACGCCGGCTTCGACGTCGACTC 414
                      ************************ ***********************************

consensus_2121#0      CCTCGACCTCGAAGTGCTCAATGGTCTGGCATTGTTAGTTGATGTTCC-AAGAGATGATA 526
consensus_2121#1      CCTCGACCTCGAAGTGGTCAATGGTCTGGCATTGTTAGTTGATGTNCCCAAGAGATGATA 474
                      **************** **************************** ** ***********

consensus_2121#0      ATATTACAGCTAAAATGATGGAATCATTACATATTCCTAAAGGAATTCAACGAGTGCTAT 586
consensus_2121#1      ATATTACAGCTAAAATGATGGAATCATTACATATTCCTAAGGGAATTCAAC-AGTG---- 529
                      **************************************** ********** ****    

consensus_2121#0      TTAGAACACTAAATACTGACAGGCAACTAATGTGGAAGAAAGAATTTGACACTAGTTATG 646
consensus_2121#1      ------------------------------------------------------------
                                                                                  

consensus_2121#0      TGGGTTTTATGGAGGATGGCGCACAATGGTTGGTAGACAACACAGATATTAAACTTGTCG 706
consensus_2121#1      ------------------------------------------------------------
                                                                                  

consensus_2121#0      GAATAGACTATTTGTCTGTTGCAGCTTTTGATGACTTGATCCCGTCACATTTAGTTCTTC 766
consensus_2121#1      ------------------------------------------------------------
                                                                                  

consensus_2121#0      TCAAAAACAGGGATATCATTCTTGTCGAGGGCCTCAAACTGGAAAATATCATGCCTGGGA 826
consensus_2121#1      ------------------------------------------------------------
                                                                                  

consensus_2121#0      TATACTCCTTGCACTGCCTGCCACTTCGGCTGCGGGGTGCTGAAGGTTCACCAATCAGAT 886
consensus_2121#1      ------------------------------------------------------------
                                                                                  

consensus_2121#0      GCATCCTTATAAAGTGAAGGGGACTAGGATCAGTGCGTTTGCTAGTATCAATGCAACTTC 946
consensus_2121#1      ------------------------------------------------------------
                                                                                  

consensus_2121#0      AGTTGCACTGGATCACTGCATGATGCAGGTCTGCCAAATAAAATTGTGTCATGTCGGTGC 1006
consensus_2121#1      ------------------------------------------------------------
                                                                                  

consensus_2121#0      TAAGCTCTTGGACTTGGAAGCTGTACAGCATAGTCGTAAAACACACAACTATCGATGAAC 1066
consensus_2121#1      ------------------------------------------------------------
                                                                                  

consensus_2121#0      TGCACAATGGGCACATTCTGCGACTTCTCTTTTGAACAAACTCAATTGAAGTTTAGGGCC 1126
consensus_2121#1      ------------------------------------------------------------
                                                                                  

consensus_2121#0      CCTTTGATTTGTATGAAAAATGTAGGAATTTTGGAGGATTTCAATTCTATGAAGGCCTTT 1186
consensus_2121#1      ------------------------------------------------------------
                                                                                  

consensus_2121#0      GAAATAAAGAATTGAATCATATCCAATTCTTTAAAATTCCTATGGAATAGGTAATTCTAT 1246
consensus_2121#1      ------------------------------------------------------------
                                                                                  

consensus_2121#0      GTACATTTTGAAGGAAAGTTAGTAAGAGGTCTAACCTCCAAGTC 1290
consensus_2121#1      --------------------------------------------