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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1157 fasta sequence
[TGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTACGTCATCTCCCCCACAGGCGGAATTTGTTCGCCGGGCACACGCGAGGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGCTGATCGTCCTAGAATAGTCCTAGCTGGCGACGCTTTTGAAGTGTATCCTCATATCTCATCTCGTAGACCATCAACAGTGCAAGGTGCACTGTTGCGTATGTTCTATCCTGGTGCTATTGGTCTCCCAGAATTCAGGACACCTGCACTTACTTGGAGGGACTACAAGAGGTCTACAAATGAAAGAATAATGTCACCAGCTGACCGAGTTCTTAAAGAATTTTGGTATTGTTTTAAATGTGATCCCACTGACAAAGTGGAAGCTGATAAAGTCTTGGAGCAAAATTTCAAGAAGAAAGTGCCACAAATGTTGTTTGAAGAGAAGAAAAGAGCTACTAATAAGTTATATAAAAAAGGCAAAGTACCAGCAGAGGATGTTGATGAGGATGATAACCATTGGCCTACTGTGCAAGCTTTGGTTTCTGCTAAACCAAAGGATTTTTCAGTTACTGAAGAGGGTTGGCGTTTACTTTGTGAGCACTGGAGTACACCTAAATTTAGGAAGAAATCTTTAAATGGGAAGAGAAACAGGTTAGCTGGAGGTGATACTGGATACCAATGCGGCGGGTCGCGAGGCTTGGTTGCCATGAAGCAGTTCCTGCAACATAAAAAAGGTGGGCAACAAGGACTTGCTGCTGCTTGGCAGCACACACACGAGATGCAACAAGGAAATAATGAACAGCTATGCAACCAGAGGACAGAAGAAGCTTGGAGTGATTTTGATCAAGAGGGAGGAAATGAGATTGATGATGATGAGGGCAATGATTTTGATCTTGAGGAAGGAAATGGGATTCCTGAAGAAGATGGCAATAGAAGACGGACCACCCTTGTAGCTTAGAGATTTTTCCTCTCAATCTATCTTATTTTAAATGTTACAGACTTGTTTCAATTAAAGTCTTTCATGCAAGACATGTCATGTATTACTTAGTTTTGCTATGGTGATGGATGATAAATATTTTAGAACAATTTGGTTATATATCTATGGTTGAACTTCCCGTGGAAAAAAAAAAAAAAAAAAA]
[+] EMBL AF442490 [TGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTACGTCATCTCCCCCACAGGCGGAATTTGTTCGCCGGGCACACGCGAGGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGCTGATCGTCCTAGAATAGTCCTAGCTGGCGACGCTTTTGAAGTGTATCCTCATATCTCATCTCGTAGACCATCAACAGTGCAAGGTGCACTGTTGCGTATGTTCTATCCTGGTGCTATTGGTCTCCCAGAATTCAGGACACCTGCACTTACTTGGAGGGACTACAAGAGGTCTACAAATGAAAGAATAATGTCACCAGCTGACCGAGTTCTTAAAGAATTTTGGTATTGTTTTAAATGTGATCCCACTGACAAAGTGGAAGCTGATAAAGTCTTGGAGCAAAATTTCAAGAAGAAAGTGCCACAAATGTTGTTTGAAGAGAAGAAAAGAGCTACTAATAAGTTATATAAAAAAGGCAAAGTACCAGCAGAGGATGTTGATGAGGATGATAACCATTGGCCTACTGTGCAAGCTTTGGTTTCTGCTAAACCAAAGGATTTTTCAGTTACTGAAGAGGGTTGGCGTTTACTTTGTGAGCACTGGAGTACACCTAAATTTAGGAAGAAATCTTTAAATGGGAAGAGAAACAGGTTAGCTGGAGGTGATACTGGATACCAATGCGGCGGGTCGCGAGGCTTGGTTGCCATGAAGCAGTTCCTGCAACATAAAAAAGGTGGGCAACAAGGACTTGCTGCTGCTTGGCAGCACACACACGAGATGCAACAAGGAAATAATGAACAGCTATGCAACCAGAGGACAGAAGAAGCTTGGAGTGATTTTGATCAAGAGGGAGGAAATGAGATTGATGATGATGAGGGCAATGATTTTGATCTTGAGGAAGGAAATGGGATTCCTGAAGAAGATGGCAATAGAAGACGGACCACCCTTGTAGCTTAGAGATTTTTCCTCTCAATCTATCTTATTTTAAATGTTACAGACTTGTTTCAATTAAAGTCTTTCATGCAAGACATGTCATGTATTACTTAGTTTTGCTATGGTGATGGATGATAAATATTTTAGAACAATTTGGTTATATATCTATGGTTGAACTTCCCGTGGAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_2123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[AATAGTTGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTATGTCATCGCCGGTTCCTCTCCTCTCCCCACCGGCGGAATTTGTTCGCCGGGCACACGCGAGGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGATGATCATCCTAGAATAGTCCCAGCTGGCGACGCTTTTGAAGTGTATCCTCGTATCTCATCTCGTAGACCATCGACAGTGCAAGGTGCACTGTTGCATAGGTTCTATCCTGGTGCTATTGGTCTCCCAGAATGCAGGACACCTGCACTTACTTGGAGGGACTACAAGAAGGTCTACAATGAAAGAATAATGGTCACAGCTGACCGAGTTCTTAAAAATTTGGGTATGGTT]
[+] EMBL BF475207 [AATAGTTGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTATGTCATCGCCGGTTCCTCTCCTCTCCCCACCGGCGGAATTTGTTCGCCGGGCACACGCGAGGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGATGATCATCCTAGAATAGTCCCAGCTGGCGACGCTTTTGAAGTGTATCCTCGTATCTCATCTCGTAGACCATCGACAGTGCAAGGTGCACTGTTGCATAGGTTCTATCCTGGTGCTATTGGTCTCCCAGAATGCAGGACACCTGCACTTACTTGGAGGGACTACAAGAAGGTCTACAATGAAAGAATAATGGTCACAGCTGACCGAGTTCTTAAAAATTTGGGTATGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2123#0 ------TGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTA 54
consensus_2123#1 AATAGTTGGAAGCAAAACTGATTCATTAGATTGAATCTGTGAATTCCCTTCCTCTCCGTA 60
******************************************************
consensus_2123#0 CGTCATCTCC---------------CCCACAGGCGGAATTTGTTCGCCGGGCACACGCGA 99
consensus_2123#1 TGTCATCGCCGGTTCCTCTCCTCTCCCCACCGGCGGAATTTGTTCGCCGGGCACACGCGA 120
****** ** ***** *****************************
consensus_2123#0 GGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGCTGATCGTCCTAGAATAGT 159
consensus_2123#1 GGGCACCACTCCACGTCAAGGCAACCTGCTAATGGAGGAGGATGATCATCCTAGAATAGT 180
***************************************** ***** ************
consensus_2123#0 CCTAGCTGGCGACGCTTTTGAAGTGTATCCTCATATCTCATCTCGTAGACCATCAACAGT 219
consensus_2123#1 CCCAGCTGGCGACGCTTTTGAAGTGTATCCTCGTATCTCATCTCGTAGACCATCGACAGT 240
** ***************************** ********************* *****
consensus_2123#0 GCAAGGTGCACTGTTGCGTATGTTCTATCCTGGTGCTATTGGTCTCCCAGAATTCAGGAC 279
consensus_2123#1 GCAAGGTGCACTGTTGCATAGGTTCTATCCTGGTGCTATTGGTCTCCCAGAATGCAGGAC 300
***************** ** ******************************** ******
consensus_2123#0 ACCTGCACTTACTTGGAGGGACTACAAGA-GGTCTACAAATGAAAGAATAATGTCACCAG 338
consensus_2123#1 ACCTGCACTTACTTGGAGGGACTACAAGAAGGTCTACAA-TGAAAGAATAATGGTCACAG 359
***************************** ********* ************* ***
consensus_2123#0 CTGACCGAGTTCTTAAAGAATTTTGGTATTGTTTTAAATGTGATCCCACTGACAAAGTGG 398
consensus_2123#1 CTGACCGAGTTCTTAAA-AATTTGGGTATGGTT--------------------------- 391
***************** ***** ***** ***
consensus_2123#0 AAGCTGATAAAGTCTTGGAGCAAAATTTCAAGAAGAAAGTGCCACAAATGTTGTTTGAAG 458
consensus_2123#1 ------------------------------------------------------------
consensus_2123#0 AGAAGAAAAGAGCTACTAATAAGTTATATAAAAAAGGCAAAGTACCAGCAGAGGATGTTG 518
consensus_2123#1 ------------------------------------------------------------
consensus_2123#0 ATGAGGATGATAACCATTGGCCTACTGTGCAAGCTTTGGTTTCTGCTAAACCAAAGGATT 578
consensus_2123#1 ------------------------------------------------------------
consensus_2123#0 TTTCAGTTACTGAAGAGGGTTGGCGTTTACTTTGTGAGCACTGGAGTACACCTAAATTTA 638
consensus_2123#1 ------------------------------------------------------------
consensus_2123#0 GGAAGAAATCTTTAAATGGGAAGAGAAACAGGTTAGCTGGAGGTGATACTGGATACCAAT 698
consensus_2123#1 ------------------------------------------------------------
consensus_2123#0 GCGGCGGGTCGCGAGGCTTGGTTGCCATGAAGCAGTTCCTGCAACATAAAAAAGGTGGGC 758
consensus_2123#1 ------------------------------------------------------------
consensus_2123#0 AACAAGGACTTGCTGCTGCTTGGCAGCACACACACGAGATGCAACAAGGAAATAATGAAC 818
consensus_2123#1 ------------------------------------------------------------
consensus_2123#0 AGCTATGCAACCAGAGGACAGAAGAAGCTTGGAGTGATTTTGATCAAGAGGGAGGAAATG 878
consensus_2123#1 ------------------------------------------------------------
consensus_2123#0 AGATTGATGATGATGAGGGCAATGATTTTGATCTTGAGGAAGGAAATGGGATTCCTGAAG 938
consensus_2123#1 ------------------------------------------------------------
consensus_2123#0 AAGATGGCAATAGAAGACGGACCACCCTTGTAGCTTAGAGATTTTTCCTCTCAATCTATC 998
consensus_2123#1 ------------------------------------------------------------
consensus_2123#0 TTATTTTAAATGTTACAGACTTGTTTCAATTAAAGTCTTTCATGCAAGACATGTCATGTA 1058
consensus_2123#1 ------------------------------------------------------------
consensus_2123#0 TTACTTAGTTTTGCTATGGTGATGGATGATAAATATTTTAGAACAATTTGGTTATATATC 1118
consensus_2123#1 ------------------------------------------------------------
consensus_2123#0 TATGGTTGAACTTCCCGTGGAAAAAAAAAAAAAAAAAAA 1157
consensus_2123#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||