Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2129 cluster # 2129       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2129#0 length = 2061 sequences # 2  

consensusID : consensus_2129#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2061
fasta sequence
                              [ACGTCCCGCCCAAAAATTCCCCAACTCCCGCTCACTCCGTCGTTCCCCTTTGTTCCCCGCGTCGCCCTCGCGCCTCAACTAGGTTTCCGACGCCCTCCTCGCGCCGCCGGCCGCCGCCGCCTCGCCGTCATCCGCCGCCATGTCCCAGCCCGTCACGCCTCGCCGCACCACCCGCTCCTCCGCGTCCGCCTCCCCCTCGCCCGCACCCGCCTCGCCAACATCTCCGCCCAAATCCAGGCCCAAACCCTCGCCCAGACGCCAGCTCCTCGCCGCCGCCGCCGCACCCCCGAAGGAGGATGGTTCCTCCGCCGACGCGCTCCTCGCCGAGCTCCCCGGCCGCCGCGCGCAGGCGATGGATATCCTCCGGCTCCTCGCGCCGGCGCCGGCCCTCCCCTTGATGCTCCACGGCGGCGCCGCCACCGGCAAGACGCGCGCCCTCCTCCTGGCGCTGCGGTACCTCCGCCCCAGCCAGCGCCTCGTCTACGCCGCACTCCGTTCCCTCCCTTCCCCTCGCGCCCTCTTCGCTTCTCTCCTCTCCCAGCTCAGCGCAACGCCATTCTCCACTTCCTCTCGCCACCGCGTCCCCGACAAGCCCTCCGACTTCGTCGCCGCACTCCGCGACGCCCTCAATGGTATCGTCTCCCAGGGCGAGGTCGTATACCTAGTGTTCGACAACTTGGAAGTTGTGAGGAGCTGGGATAAGGGTGGTCAGCTTCTCCCTCTCCTTCTCCGCCTCCACGACCTCCTCCAATTACCGCAGGTCGTGCTCGTGTATGTGAGCAGTGCAACGCCTGATGCGTACTACTCCATGACTGGCTCTGTTGAACCAAATTATGTTTACTTTCCGGATTACACAGTGGATGAAGTTCGCGACATTCTGATGCATGACCATCCCAACCCAAAGCTCTACTCATCCTTCCTGAGTGTGGCACTGAAGCCATTATTTCGCGTAACACGAAGAGTGGATGAGCTTTCGGCGGTGCTGGAACCGCTTTTCAGGAGGTACTGTGAGCCACTGGGTGACTTGAAGGCAGTTCCTGATGAAGGCATGAAGAGGAGGTTGTTTGAACATGTTCAGTCACATCTTGCAGTTGCGTTGAATGAGACATTCAATGTCCCCATGAGAGCTTCCATGGATGAAATCAAGGACGGTGGTTCTGCTGGGAAGGGCAGTGCTAAAAGGCAGTTTGCTGGTAAAGATGGACTCTCCAGTGAACTGGAGTTCCATATGTCTGTGTCAGCCAAGTACCTTCTGCTGTCTGCTTTCTTGGCTTCAAGGAACCCTGCTACTCTTGATGCAGCTTTGTTTGATTCAACTGGAGGCTTAGATAACCGCAAGCGCAAGAGAAAGAGCTCCCAGGCTTCAATGCATATGAAGGATACCATAGTTGAAGAGATGCTTATGAAAGGGCCTGGTACATTTCCTCTTGAGAGGCTCTTGGCTATATTTCAGTGCATCACATCCGTGTCAGAAGATATACTTGATGAAATTGATTGCCCTGGCAATATGGCAAGTGAAAGTGGAACAACTGGTTTGATGTCGGATGTTCTACTACAGTTGTCAACATTGTGCAATTCTAATTTCCTCTCGAAAAGCCGGAGCTGCCCATTAGAGGGCTCAGCTAGGTACCGTTCAAACATTGATGAAGATTTAGCTCTCAAGGTCGCCAGGAGTGTGAATTTTCCCCTCTCAAAGTATATGTACAGAAGATAGCCTTTCGATATTTACTATAAGCAGCAAAAACTACTGGTGATGGTTCTCCAGTTACCTTGATTGTAGAGTATTGAGGCAAGTGCTAGATGTCCCCTTTTTCCTTTTAGTTTCTTCTGTTATTTCTCCTTCAAAGATTGAGTACTATAGCCAATTTTGAATTTAATGTTGACTGAGCAAGCTCCAGTTAACTGCCTTGGAAGTTTCAATATGTTGGCCATGTGACTTAACCATCAGTAAATCAAGGTTTCATACTGAAACATTTGGCTAGAATGTAAGCGTATGTTCTTCAAATCTAAATGTAATGGCAACTATCGTTGTTGTGTAATTCAATAGTTATGAGCTATGAC]

[+] EMBL AK063449             [ACGTCCCGCCCAAAAATTCCCCAACTCCCGCTCACTCCGTCGTTCCCCTTTGTTCCCCGCGTCGCCCTCGCGCCTCAACTAGGTTTCCGACGCCCTCCTCGCGCCGCCGGCCGCCGCCGCCTCGCCGTCATCCGCCGCCATGTCCCAGCCCGTCACGCCTCGCCGCACCACCCGCTCCTCCGCGTCCGCCTCCCCCTCGCCCGCACCCGCCTCGCCAACATCTCCGCCCAAATCCAGGCCCAAACCCTCGCCCAGACGCCAGCTCCTCGCCGCCGCCGCCGCACCCCCGAAGGAGGATGGTTCCTCCGCCGACGCGCTCCTCGCCGAGCTCCCCGGCCGCCGCGCGCAGGCGATGGATATCCTCCGGCTCCTCGCGCCGGCGCCGGCCCTCCCCTTGATGCTCCACGGCGGCGCCGCCACCGGCAAGACGCGCGCCCTCCTCCTGGCGCTGCGGTACCTCCGCCCCAGCCAGCGCCTCGTCTACGCCGCACTCCGTTCCCTCCCTTCCCCTCGCGCCCTCTTCGCTTCTCTCCTCTCCCAGCTCAGCGCAACGCCATTCTCCACTTCCTCTCGCCACCGCGTCCCCGACAAGCCCTCCGACTTCGTCGCCGCACTCCGCGACGCCCTCAATGGTATCGTCTCCCAGGGCGAGGTCGTATACCTAGTGTTCGACAACTTGGAAGTTGTGAGGAGCTGGGATAAGGGTGGTCAGCTTCTCCCTCTCCTTCTCCGCCTCCACGACCTCCTCCAATTACCGCAGGTCGTGCTCGTGTATGTGAGCAGTGCAACGCCTGATGCGTACTACTCCATGACTGGCTCTGTTGAACCAAATTATGTTTACTTTCCGGATTACACAGTGGATGAAGTTCGCGACATTCTGATGCATGACCATCCCAACCCAAAGCTCTACTCATCCTTCCTGAGTGTGGCACTGAAGCCATTATTTCGCGTAACACGAAGAGTGGATGAGCTTTCGGCGGTGCTGGAACCGCTTTTCAGGAGGTACTGTGAGCCACTGGGTGACTTGAAGGCAGTTCCTGATGAAGGCATGAAGAGGAGGTTGTTTGAACATGTTCAGTCACATCTTGCAGTTGCGTTGAATGAGACATTCAATGTCCCCATGAGAGCTTCCATGGATGAAATCAAGGACGGTGGTTCTGCTGGGAAGGGCAGTGCTAAAAGGCAGTTTGCTGGTAAAGATGGACTCTCCAGTGAACTGGAGTTCCATATGTCTGTGTCAGCCAAGTACCTTCTGCTGTCTGCTTTCTTGGCTTCAAGGAACCCTGCTACTCTTGATGCAGCTTTGTTTGATTCAACTGGAGGCTTAGATAACCGCAAGCGCAAGAGAAAGAGCTCCCAGGCTTCAATGCATATGAAGGATACCATAGTTGAAGAGATGCTTATGAAAGGGCCTGGTACATTTCCTCTTGAGAGGCTCTTGGCTATATTTCAGTGCATCACATCCGTGTCAGAAGATATACTTGATGAAATTGATTGCCCTGGCAATATGGCAAGTGAAAGTGGAACAACTGGTTTGATGTCGGATGTTCTACTACAGTTGTCAACATTGTGCAATTCTAATTTCCTCTCGAAAAGCCGGAGCTGCCCATTAGAGGGCTCAGCTAGGTACCGTTCAAACATTGATGAAGATTTAGCTCTCAAGGTCGCCAGGAGTGTGAATTTTCCCCTCTCAAAGTATATGTACAGAAGATAGCCTTTCGATATTTACTATAAGCAGCAAAAACTACTGGTGATGGTTCTCCAGTTACCTTGATTGTAGAGTATTGAGGCAAGTGCTAGATGTCCCCTTTTTCCTTTTAGTTTCTTCTGTTATTTCTCCTTCAAAGATTGAGTACTATAGCCAATTTTGAATTTAATGTTGACTGAGCAAGCTCCAGTTAACTGCCTTGGAAGTTTCAATATGTTGGCCATGTGACTTAACCATCAGTAAATCAAGGTTTCATACTGAAACATTTGGCTAGAATGTAAGCGTATGTTCTTCAAATCTAAATGTAATGGCAACTATCGTTGTTGTGTAATTCAATAGTTATGAGCTATGAC]
[+] EMBL AB099524             [                                                                                                                                                                                                                                                                                                                                                                         CTCCGGCTCCTCGCGCCGGCGCCGGCCCTCCCCTTGATGCTCCACGGCGGCGCCGCCACCGGCAAGACGCGCGCCCTCCTCCTGGCGCTGCGGTACCTCCGCCCCAGCCAGCGCCTCGTCTACGCCGCACTCCGTTCCCTCCCTTCCCCTCGCGCCCTCTTCGCTTCTCTCCTCTCCCAGCTCAGCGCAACGCCATTCTCCACTTCCTCTCGCCACCGCGTCCCCGACAAGCCCTCCGACTTCGTCGCCGCACTCCGCGACGCCCTCAATGGTATCGTCTCCCAGGGCGAGGTCGTATACCTAGTGTTCGACAACTTGGAAGTTGTGAGGAGCTGGGATAAGGGTGGTCAGCTTCTCCCTCTCCTTCTCCGCCTCCACGACCTCCTCCAATTACCGCAGTTCGTGCTCGTGTATGTGAGCAGTGCAACGCCTGATGCGTACTACTCCATGACTGGCTCTGTTGAACCAAATTATGTTTACTTTCCGGATTACACAGTGGATGAAGTTCGCGACATTCTGATGCATGACCATCCCAACCCAAAGCTCTACTCATCCTTCCTGAGTGTGGCACTGAAGCCATTATTTCGCGTAACACGAAGAGTGGATGAGCTTTCGGCGGTGCTGGAACCGCTTTTCAGGAGGTACTGTGAGCCACTGGGTGACTTGAAGGCAGTTCCTGATGAAGGCATGAAGAGGAGGTTGTTTGAACATGTTCAGTCACATCTTGCAGTTGCGTTGAATGAGACATTCAATGTCCCCATGAGAGCTTCCATGGATGAAATCAAGGACGGTGGTTCTGCTGGGAAGGGCAGTGCTAAAAGGCAGTTTGCTGGTAAAGATGGACTCTCCAGTGAACTGGAGTTCCATATGTCTGTGTCAGCCAAGTACCTTCTGCTGTCTGCTTTCTTGGCTTCAAGGAACCCTGCTACTCTTGATGCAGCTTTGTTTGATTCAACTGGAGGCTTAGATAACCGCAAGCGCAAGAGAAAGAGCTCCCAGGCTTCAATGCATATGAAGGACACCATAGTTGAAGAGATGCTTATGAAAGGGCCTGGTACATTTCCTCTTGAGAGGCTCTTGGCTATATTTCAGTGCATCACATCCGTGTCAGAAGATATACTTGATGAAATTGATTGCCCTGACAATATGGCAAGTGAAAGTGGAACAACTGGTTTGATGTCGGATGTTCTACTACAGTTGTCAACATTGTGCAATTCTAATTTCCTCTCGAAAAGCCGGAGCTGCCCATTAGAGGGCTCAGCTAGGTACCGTTCAAACATTGATGAAGATTTAGCTCTCAAGGTCGCCAGGAGTGTGAATTTTCCCCTCTCAAAGTATATGTA                                                                                                                                                                                                                                                                                                                                                                     ]


>consensus_2129#0 ACGTCCCGCCCAAAAATTCCCCAACTCCCGCTCACTCCGTCGTTCCCCTTTGTTCCCCGC GTCGCCCTCGCGCCTCAACTAGGTTTCCGACGCCCTCCTCGCGCCGCCGGCCGCCGCCGC CTCGCCGTCATCCGCCGCCATGTCCCAGCCCGTCACGCCTCGCCGCACCACCCGCTCCTC CGCGTCCGCCTCCCCCTCGCCCGCACCCGCCTCGCCAACATCTCCGCCCAAATCCAGGCC CAAACCCTCGCCCAGACGCCAGCTCCTCGCCGCCGCCGCCGCACCCCCGAAGGAGGATGG TTCCTCCGCCGACGCGCTCCTCGCCGAGCTCCCCGGCCGCCGCGCGCAGGCGATGGATAT CCTCCGGCTCCTCGCGCCGGCGCCGGCCCTCCCCTTGATGCTCCACGGCGGCGCCGCCAC CGGCAAGACGCGCGCCCTCCTCCTGGCGCTGCGGTACCTCCGCCCCAGCCAGCGCCTCGT CTACGCCGCACTCCGTTCCCTCCCTTCCCCTCGCGCCCTCTTCGCTTCTCTCCTCTCCCA GCTCAGCGCAACGCCATTCTCCACTTCCTCTCGCCACCGCGTCCCCGACAAGCCCTCCGA CTTCGTCGCCGCACTCCGCGACGCCCTCAATGGTATCGTCTCCCAGGGCGAGGTCGTATA CCTAGTGTTCGACAACTTGGAAGTTGTGAGGAGCTGGGATAAGGGTGGTCAGCTTCTCCC TCTCCTTCTCCGCCTCCACGACCTCCTCCAATTACCGCAGGTCGTGCTCGTGTATGTGAG CAGTGCAACGCCTGATGCGTACTACTCCATGACTGGCTCTGTTGAACCAAATTATGTTTA CTTTCCGGATTACACAGTGGATGAAGTTCGCGACATTCTGATGCATGACCATCCCAACCC AAAGCTCTACTCATCCTTCCTGAGTGTGGCACTGAAGCCATTATTTCGCGTAACACGAAG AGTGGATGAGCTTTCGGCGGTGCTGGAACCGCTTTTCAGGAGGTACTGTGAGCCACTGGG TGACTTGAAGGCAGTTCCTGATGAAGGCATGAAGAGGAGGTTGTTTGAACATGTTCAGTC ACATCTTGCAGTTGCGTTGAATGAGACATTCAATGTCCCCATGAGAGCTTCCATGGATGA AATCAAGGACGGTGGTTCTGCTGGGAAGGGCAGTGCTAAAAGGCAGTTTGCTGGTAAAGA TGGACTCTCCAGTGAACTGGAGTTCCATATGTCTGTGTCAGCCAAGTACCTTCTGCTGTC TGCTTTCTTGGCTTCAAGGAACCCTGCTACTCTTGATGCAGCTTTGTTTGATTCAACTGG AGGCTTAGATAACCGCAAGCGCAAGAGAAAGAGCTCCCAGGCTTCAATGCATATGAAGGA TACCATAGTTGAAGAGATGCTTATGAAAGGGCCTGGTACATTTCCTCTTGAGAGGCTCTT GGCTATATTTCAGTGCATCACATCCGTGTCAGAAGATATACTTGATGAAATTGATTGCCC TGGCAATATGGCAAGTGAAAGTGGAACAACTGGTTTGATGTCGGATGTTCTACTACAGTT GTCAACATTGTGCAATTCTAATTTCCTCTCGAAAAGCCGGAGCTGCCCATTAGAGGGCTC AGCTAGGTACCGTTCAAACATTGATGAAGATTTAGCTCTCAAGGTCGCCAGGAGTGTGAA TTTTCCCCTCTCAAAGTATATGTACAGAAGATAGCCTTTCGATATTTACTATAAGCAGCA AAAACTACTGGTGATGGTTCTCCAGTTACCTTGATTGTAGAGTATTGAGGCAAGTGCTAG ATGTCCCCTTTTTCCTTTTAGTTTCTTCTGTTATTTCTCCTTCAAAGATTGAGTACTATA GCCAATTTTGAATTTAATGTTGACTGAGCAAGCTCCAGTTAACTGCCTTGGAAGTTTCAA TATGTTGGCCATGTGACTTAACCATCAGTAAATCAAGGTTTCATACTGAAACATTTGGCT AGAATGTAAGCGTATGTTCTTCAAATCTAAATGTAATGGCAACTATCGTTGTTGTGTAAT TCAATAGTTATGAGCTATGAC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)