Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2140 cluster # 2140       Sequences # 2       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2140#0 length = 1434 sequences # 2  
consensusID : consensus_2140#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1434
fasta sequence 
                              [AAGAGAGCTAGCTAGAGCTCCATTTACAACCATTACAAGATTGCATCAGAGAAGATATCTTCATAGATAATTGTTGGAGCAAGAACACAAGAAAACACGTAGGTTCAATTATAATCGATCGTGGAGATGGTGACCAGCAAGGAGTTTGCATGGGATCAGGCGGCCATGGATCAGAAGATCAAGAGCGACGTCGGCGAGGTGGTGCTCGCCGGAGACGAGGAAGAAGACGGGGACGTGGTGCTCCCGGGGTTCAGGTTCCACCCGACCGACGAGGAGCTCGTCACGTTCTACCTCCGGCGGAAGGTGGCGAGGAAGTCTCTCAGTATAGAGATCATCAAGGAGATGGACATCTACAAGCACGATCCATGGGATCTCCCCAATGCGAGCACGGTAGGTGGAGAGAAGGAGTGGTACTTCTTCTGCCTGAGAGGGAGGAAGTACAGGAACAGCATCAGGCCCAACAGGGTGACGGGATCCGGGTTCTGGAAGGCGACGGGGATCGACCGGCCGATCTACTCCGCCGCCGTCAACAGCAACTCCGGCGAGTCGATCGGGCTGAAGAAGTCGCTCGTCTACTACCGCGGCAGCGCCGGCAAGGGCACCAAGACCGACTGGATGATGCACGAGTTCCGCCTCCCGCCGGCGATCGCCGCCGCCGACGCCTCCCCGTGCATGCAAGAAGCTGAGGTCTGGACCATCTGCAGAATCTTCAAGAGAAGCATCACCTACAGGAAGCAGCAGCAGCAGCAGGCCTGGAGGCCGCCGGCGACGGTGACCGTCAAGGCCCCACCGCCGGGGGACTCGAGCTCCAACACCGGCAGCTTCGAGTCGGACGGCGGCGGCGACGAGTTCATGAACTGCGGCCTGACTCCGGCCATCTCCCAGCAGCAGCAGCACGGCGGCCGTCATCAGATGATGAGCACGATGAGCTGCAACGGCGGCTACTTCTTCAACGACGGCATCCATCACAGCCACAGCCACCACAAGCTTCATAGTCAATGGGGCTCCCTACAAATGGCGCCGCCGGAGCCGAAGCCGGAGCCGGAGCAGAAGCCTCTGAGCTCGCCGGCGATGACGATCGCCTTCCATCAAAACGACCATGGCTTCCCCGCCGCCGCCGCGGATTTCTACAAGGATGGGTACTTGGAAGAGATTGCGAGGATGATGGAGGTGGCTGATCCAAGTCCAACAGGATTCTATGACTGTAGATATTGATCAGTAGGAACA-GGGTTTCAG--AATAGATGCTAGATATGCAGAATTCGCCGA-----CAAGAA-----CAGTGCCCCCTTTGTGTGAGAGGCTGACATGTAGGGCCCATGCTG-CAGAGGCTGCTATCACTATTAGTCTTGTACTTTTGTTTTCTGATCTAATATATACACTCCAGATGGGATGTGAACTGTCATACAAGATACCTGATTGTTACTCGCCTAAAAAAAAAA]

[+] EMBL AK073539             [AAGAGAGCTAGCTAGAGCTCCATTTACAACCATTACAAGATTGCATCAGAGAAGATATCTTCATAGATAATTGTTGGAGCAAGAACACAAGAAAACACGTAGGTTCAATTATAATCGATCGTGGAGATGGTGACCAGCAAGGAGTTTGCATGGGATCAGGCGGCCATGGATCAGAAGATCAAGAGCGACGTCGGCGAGGTGGTGCTCGCCGGAGACGAGGAAGAAGACGGGGACGTGGTGCTCCCGGGGTTCAGGTTCCACCCGACCGACGAGGAGCTCGTCACGTTCTACCTCCGGCGGAAGGTGGCGAGGAAGTCTCTCAGTATAGAGATCATCAAGGAGATGGACATCTACAAGCACGATCCATGGGATCTCCCCAATGCGAGCACGGTAGGTGGAGAGAAGGAGTGGTACTTCTTCTGCCTGAGAGGGAGGAAGTACAGGAACAGCATCAGGCCCAACAGGGTGACGGGATCCGGGTTCTGGAAGGCGACGGGGATCGACCGGCCGATCTACTCCGCCGCCGTCAACAGCAACTCCGGCGAGTCGATCGGGCTGAAGAAGTCGCTCGTCTACTACCGCGGCAGCGCCGGCAAGGGCACCAAGACCGACTGGATGATGCACGAGTTCCGCCTCCCGCCGGCGATCGCCGCCGCCGACGCCTCCCCGTGCATGCAAGAAGCTGAGGTCTGGACCATCTGCAGAATCTTCAAGAGAAGCATCACCTACAGGAAGCAGCAGCAGCAGCAGGCCTGGAGGCCGCCGGCGACGGTGACCGTCAAGGCCCCACCGCCGGGGGACTCGAGCTCCAACACCGGCAGCTTCGAGTCGGACGGCGGCGGCGACGAGTTCATGAACTGCGGCCTGACTCCGGCCATCTCCCAGCAGCAGCAGCACGGCGGCCGTCATCAGATGATGAGCACGATGAGCTGCAACGGCGGCTACTTCTTCAACGACGGCATCCATCACAGCCACAGCCACCACAAGCTTCATAGTCAATGGGGCTCCCTACAAATGGCGCCGCCGGAGCCGAAGCCGGAGCCGGAGCAGAAGCCTCTGAGCTCGCCGGCGATGACGATCGCCTTCCATCAAAACGACCATGGCTTCCCCGCCGCCGCCGCGGATTTCTACAAGGATGGGTACTTGGAAGAGATTGCGAGGATGATGGAGGTGGCTGATCCAAGTCCAACAGGATTCTATGACTGTAGATATTGATCAGTAGGAACA GGGTTTCAG  AATAGATGCTAGATATGCAGAATTCGCCGA     CAAGAA     CAGTGCCCCCTTTGTGTGAGAGGCTGACATGTAGGGCCCATGCTG CAGAGGCTGCTATCACTATTAGTCTTGTACTTTTGTTTTCTGATCTAATATATACACTCCAGATGGGAT                                                ]
[+] EMBL BI812142             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTTCTTCAACGCCGCCATCCATCACA CCACAGCCACCACAAGCTTCATAGTCAATGGGGCTCCCTACAAATGGCGCCGCCGGAGCCGAAGCCGGAGCCGGAGCAGAAGCCTCTGAGCTCGCCGGCGATGACGATCGCCTTCCATCAAAACGACCATGGCTTCCCCGCCGCCGCCGCGGATTTCTACAAGGATGGGTACTTGGAAGAGATTGCGAGGATGATGGAGGTGGCTGATCCAAGTCCAACAGGATTCTATGACTGTAGATATTGATCAGTAGGAACACGGGTTTCAGAAAATAGATGCTAGATATGCAGAATTCGCCGAACCCCCAAAAAGGCCCCCGTGCCCCCTTTGTGTGAGAGGCTGACATGTAGGGCCCATGCTGCCAGAGGCTGCTATCACTATTAGTCTTGTACTTTTGTTTTCTGATCTAATATATACACTCCAGATGGGATGTGAACTGTCATACAAGATACCTGATTGTTACTCGCCTAAAAAAAAAA]




>consensus_2140#0
AAGAGAGCTAGCTAGAGCTCCATTTACAACCATTACAAGATTGCATCAGAGAAGATATCT
TCATAGATAATTGTTGGAGCAAGAACACAAGAAAACACGTAGGTTCAATTATAATCGATC
GTGGAGATGGTGACCAGCAAGGAGTTTGCATGGGATCAGGCGGCCATGGATCAGAAGATC
AAGAGCGACGTCGGCGAGGTGGTGCTCGCCGGAGACGAGGAAGAAGACGGGGACGTGGTG
CTCCCGGGGTTCAGGTTCCACCCGACCGACGAGGAGCTCGTCACGTTCTACCTCCGGCGG
AAGGTGGCGAGGAAGTCTCTCAGTATAGAGATCATCAAGGAGATGGACATCTACAAGCAC
GATCCATGGGATCTCCCCAATGCGAGCACGGTAGGTGGAGAGAAGGAGTGGTACTTCTTC
TGCCTGAGAGGGAGGAAGTACAGGAACAGCATCAGGCCCAACAGGGTGACGGGATCCGGG
TTCTGGAAGGCGACGGGGATCGACCGGCCGATCTACTCCGCCGCCGTCAACAGCAACTCC
GGCGAGTCGATCGGGCTGAAGAAGTCGCTCGTCTACTACCGCGGCAGCGCCGGCAAGGGC
ACCAAGACCGACTGGATGATGCACGAGTTCCGCCTCCCGCCGGCGATCGCCGCCGCCGAC
GCCTCCCCGTGCATGCAAGAAGCTGAGGTCTGGACCATCTGCAGAATCTTCAAGAGAAGC
ATCACCTACAGGAAGCAGCAGCAGCAGCAGGCCTGGAGGCCGCCGGCGACGGTGACCGTC
AAGGCCCCACCGCCGGGGGACTCGAGCTCCAACACCGGCAGCTTCGAGTCGGACGGCGGC
GGCGACGAGTTCATGAACTGCGGCCTGACTCCGGCCATCTCCCAGCAGCAGCAGCACGGC
GGCCGTCATCAGATGATGAGCACGATGAGCTGCAACGGCGGCTACTTCTTCAACGACGGC
ATCCATCACAGCCACAGCCACCACAAGCTTCATAGTCAATGGGGCTCCCTACAAATGGCG
CCGCCGGAGCCGAAGCCGGAGCCGGAGCAGAAGCCTCTGAGCTCGCCGGCGATGACGATC
GCCTTCCATCAAAACGACCATGGCTTCCCCGCCGCCGCCGCGGATTTCTACAAGGATGGG
TACTTGGAAGAGATTGCGAGGATGATGGAGGTGGCTGATCCAAGTCCAACAGGATTCTAT
GACTGTAGATATTGATCAGTAGGAACAGGGTTTCAGAATAGATGCTAGATATGCAGAATT
CGCCGACAAGAACAGTGCCCCCTTTGTGTGAGAGGCTGACATGTAGGGCCCATGCTGCAG
AGGCTGCTATCACTATTAGTCTTGTACTTTTGTTTTCTGATCTAATATATACACTCCAGA
TGGGATGTGAACTGTCATACAAGATACCTGATTGTTACTCGCCTAAAAAAAAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)