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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1018 fasta sequence
[CCAAACCTTCAAGTTCACCTTTGCTTAATTGCACCAGCTTAGCCGTCATGGTGAAGCCTGCAGCCGTCCTCCTGCTCCTCTACCTTCCCCTTCTCGCCACCCCGACGAGGATCGGCCTCAGCCGCAACCCCTTCGTCCCTCCTCCCAACTCTGTACCTACCATAGACAGGACGGAGATGGACGTGAGCACGTCGCCGTACCGCGACTTGATCAAGAAATGGCGAGACCTCGTGCTCCTCAACACTCGCCCGGAGGTCATGGTGCCGGAAGACCATCCGGTGCTGGCTCCCCAGTACGACGACACCGTCCCGCCGGAACGGTTGCTGTTGCCGAAGCTGGTGGCCAACGGGGACAAGACGGCCACGCTCGCCCTCCGCGACTCCAACATCTACTTCATAGGTTTCGCCAACAAAGCAGGGCAATGGTTCTCTTTCAAGGACAGGAACGACCTGCCGCCTTCCTTTCGGGCCAGGCCTCTCAGCTTTGGAGTGGACTACGCATCGATCGCCGGCTTCCGGAAAAACCTTCCAAACTACCCTCTCGGTAGGCGTCAAACGGAGTGGGCGGTAAAAGTTCTTTCAGAATACGATCCAAATCGCACTGATGAAGCAACCATAAAACGTGCGGTAGTGATCATCCTTCTTACCTTCTGCGAAGCTCTCAGGTTCTTTCCTATAAGAAATGCGGTTGAAATAGGTTGGGACTCCGTTGCCTACATTACCTCAACCGATGCGGATCGTCTCGTATGTTGGGGACAAATCTCATATATGCTTGAATATAGTTTTATGTCCGGTCATTCATGGGACTCGGAGGAACAACGTACTCGCCTCAAGAATCTAGCACGAGATTGTAAAATCTTTAACGAACCTCAGGCACTTGAAACCGTTGATGTGTTAGAGTACGGAGCTATCTTAGGTGCTAAAAGTACAAATTGGTTGTATTAATGCAAGGTGTAAGCGCCCTCCTAGCTAATATAGGCGCACTTCCACAATTTATGTACTCCAATATTATGCAACTC]
[+] EMBL AK107959 [CCAAACCTTCAAGTTCACCTTTGCTTAATTGCACCAGCTTAGCCGTCATGGTGAAGCCTGCAGCCGTCCTCCTGCTCCTCTACCTTCCCCTTCTCGCCACCCCGACGAGGATCGGCCTCAGCCGCAACCCCTTCGTCCCTCCTCCCAACTCTGTACCTACCATAGACAGGACGGAGATGGACGTGAGCACGTCGCCGTACCGCGACTTGATCAAGAAATGGCGAGACCTCGTGCTCCTCAACACTCGCCCGGAGGTCATGGTGCCGGAAGACCATCCGGTGCTGGCTCCCCAGTACGACGACACCGTCCCGCCGGAACGGTTGCTGTTGCCGAAGCTGGTGGCCAACGGGGACAAGACGGCCACGCTCGCCCTCCGCGACTCCAACATCTACTTCATAGGTTTCGCCAACAAAGCAGGGCAATGGTTCTCTTTCAAGGACAGGAACGACCTGCCGCCTTCCTTTCGGGCCAGGCCTCTCAGCTTTGGAGTGGACTACGCATCGATCGCCGGCTTCCGGAAAAACCTTCCAAACTACCCTCTCGGTAGGCGTCAAACGGAGTGGGCGGTAAAAGTTCTTTCAGAATACGATCCAAATCGCACTGATGAAGCAACCATAAAACGTGCGGTAGTGATCATCCTTCTTACCTTCTGCGAAGCTCTCAGGTTCTTTCCTATAAGAAATGCGGTTGAAATAGGTTGGGACTCCGTTGCCTACATTACCTCAACCGATGCGGATCGTCTCGTATGTTGGGGACAAATCTCATATATGCTTGAATATAGTTTTATGTCCGGTCATTCATGGGACTCGGAGGAACAACGTACTCGCCTCAAGAATCTAGCACGAGATTGTAAAATCTTTAACGAACCTCAGGCACTTGAAACCGTTGATGTGTTAGAGTACGGAGCTATCTTAGGTGCTAAAAGTACAAATTGGTTGTATTAATGCAAGGTGTAAGCGCCCTCCTAGCTAATATAGGCGCACTTCCACAATTTATGTACTCCAATATTATGCAACTC]
consensusID : consensus_2143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 994 fasta sequence
[TCAAGTTCACCTTTGCTTAATTGCACCAGCTTAGCCGTCATGGTGAAGCCTGCAGCCGTCCTCCTGCTCCTCTACCTTCCCCTTCTCGCCACCCCGACGAGGATCGGCCTCAGCCGCAACCCCTTCGTCCCTCCTCCCAACTCTGTACCTACCATAGACAGGACGGAGATGGACGTGAGCACGTCGCCGTACCGCGACTTGATCAAGAAATGGCGAGACCTCGTGCTCCTCAACACTCGCCCGGAGGTCATGGTGCCGGAAGGCCATCCGGTGCTGGCTCCCCAGTACGACGACACCGTCCCGCCGGAACGGTTGCTGTTGCCGAAGCTGGTGGCCAACGGGGACAAGACGGCCACGCTCGCCCTCCGCGACTCCAACATCTACTTCATAGGCTTCGCCAACAAAGCAGGGCAATGGTTCTCTTTCAAGGACAGGAACGACCTGCCGCCTTCCTTTCGGGCCAGGCCTCTCAGCTTTGGAGTGGACTACGCATCGATCGCCGGCTTCCGGAAAAACCTTCCAAACTACCCTCTCGGTAGGCGTCAAACGGAGTGGGCGGTAAAAGTTCTTTCAGAATACGATCCAAATCGCACTGATGAAGCAACCATAAAACGTGCGGTAGTGATCATCCTTCTTACCTTCTGCGAAGCTCTCAGGTTCTTTCCTATAAGAAATGCGGTTGAAATAGGTTGGGACTCCGTTGCCTACATTACCTCAACCGATGCGGATCGTCTCGTATGTTGGGGACAAATCTCATATATGCTTGAATATAGTTTTATGTCCGGTCATTCATGGGACTCGGAGGAACAACGTACTCGCCTCAAGAATCTAGCACGAGATTGTAAAATCTTTAACGAACCTCAGGCACTTGAAACCGTTGATGTGTTAGAGTACGGAGCTATCTTAGGTGCTAAAAGTACAAATTGGTTGTATTAATGCAAGGTGTAAGCCCCCTCCTAGCTAATATAGGCGCACTTCCACAAAAAAAAAAAAA]
[+] EMBL AB053261 [TCAAGTTCACCTTTGCTTAATTGCACCAGCTTAGCCGTCATGGTGAAGCCTGCAGCCGTCCTCCTGCTCCTCTACCTTCCCCTTCTCGCCACCCCGACGAGGATCGGCCTCAGCCGCAACCCCTTCGTCCCTCCTCCCAACTCTGTACCTACCATAGACAGGACGGAGATGGACGTGAGCACGTCGCCGTACCGCGACTTGATCAAGAAATGGCGAGACCTCGTGCTCCTCAACACTCGCCCGGAGGTCATGGTGCCGGAAGGCCATCCGGTGCTGGCTCCCCAGTACGACGACACCGTCCCGCCGGAACGGTTGCTGTTGCCGAAGCTGGTGGCCAACGGGGACAAGACGGCCACGCTCGCCCTCCGCGACTCCAACATCTACTTCATAGGCTTCGCCAACAAAGCAGGGCAATGGTTCTCTTTCAAGGACAGGAACGACCTGCCGCCTTCCTTTCGGGCCAGGCCTCTCAGCTTTGGAGTGGACTACGCATCGATCGCCGGCTTCCGGAAAAACCTTCCAAACTACCCTCTCGGTAGGCGTCAAACGGAGTGGGCGGTAAAAGTTCTTTCAGAATACGATCCAAATCGCACTGATGAAGCAACCATAAAACGTGCGGTAGTGATCATCCTTCTTACCTTCTGCGAAGCTCTCAGGTTCTTTCCTATAAGAAATGCGGTTGAAATAGGTTGGGACTCCGTTGCCTACATTACCTCAACCGATGCGGATCGTCTCGTATGTTGGGGACAAATCTCATATATGCTTGAATATAGTTTTATGTCCGGTCATTCATGGGACTCGGAGGAACAACGTACTCGCCTCAAGAATCTAGCACGAGATTGTAAAATCTTTAACGAACCTCAGGCACTTGAAACCGTTGATGTGTTAGAGTACGGAGCTATCTTAGGTGCTAAAAGTACAAATTGGTTGTATTAATGCAAGGTGTAAGCCCCCTCCTAGCTAATATAGGCGCACTTCCACAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2143#0 CCAAACCTTCAAGTTCACCTTTGCTTAATTGCACCAGCTTAGCCGTCATGGTGAAGCCTG 60
consensus_2143#1 --------TCAAGTTCACCTTTGCTTAATTGCACCAGCTTAGCCGTCATGGTGAAGCCTG 52
****************************************************
consensus_2143#0 CAGCCGTCCTCCTGCTCCTCTACCTTCCCCTTCTCGCCACCCCGACGAGGATCGGCCTCA 120
consensus_2143#1 CAGCCGTCCTCCTGCTCCTCTACCTTCCCCTTCTCGCCACCCCGACGAGGATCGGCCTCA 112
************************************************************
consensus_2143#0 GCCGCAACCCCTTCGTCCCTCCTCCCAACTCTGTACCTACCATAGACAGGACGGAGATGG 180
consensus_2143#1 GCCGCAACCCCTTCGTCCCTCCTCCCAACTCTGTACCTACCATAGACAGGACGGAGATGG 172
************************************************************
consensus_2143#0 ACGTGAGCACGTCGCCGTACCGCGACTTGATCAAGAAATGGCGAGACCTCGTGCTCCTCA 240
consensus_2143#1 ACGTGAGCACGTCGCCGTACCGCGACTTGATCAAGAAATGGCGAGACCTCGTGCTCCTCA 232
************************************************************
consensus_2143#0 ACACTCGCCCGGAGGTCATGGTGCCGGAAGACCATCCGGTGCTGGCTCCCCAGTACGACG 300
consensus_2143#1 ACACTCGCCCGGAGGTCATGGTGCCGGAAGGCCATCCGGTGCTGGCTCCCCAGTACGACG 292
****************************** *****************************
consensus_2143#0 ACACCGTCCCGCCGGAACGGTTGCTGTTGCCGAAGCTGGTGGCCAACGGGGACAAGACGG 360
consensus_2143#1 ACACCGTCCCGCCGGAACGGTTGCTGTTGCCGAAGCTGGTGGCCAACGGGGACAAGACGG 352
************************************************************
consensus_2143#0 CCACGCTCGCCCTCCGCGACTCCAACATCTACTTCATAGGTTTCGCCAACAAAGCAGGGC 420
consensus_2143#1 CCACGCTCGCCCTCCGCGACTCCAACATCTACTTCATAGGCTTCGCCAACAAAGCAGGGC 412
**************************************** *******************
consensus_2143#0 AATGGTTCTCTTTCAAGGACAGGAACGACCTGCCGCCTTCCTTTCGGGCCAGGCCTCTCA 480
consensus_2143#1 AATGGTTCTCTTTCAAGGACAGGAACGACCTGCCGCCTTCCTTTCGGGCCAGGCCTCTCA 472
************************************************************
consensus_2143#0 GCTTTGGAGTGGACTACGCATCGATCGCCGGCTTCCGGAAAAACCTTCCAAACTACCCTC 540
consensus_2143#1 GCTTTGGAGTGGACTACGCATCGATCGCCGGCTTCCGGAAAAACCTTCCAAACTACCCTC 532
************************************************************
consensus_2143#0 TCGGTAGGCGTCAAACGGAGTGGGCGGTAAAAGTTCTTTCAGAATACGATCCAAATCGCA 600
consensus_2143#1 TCGGTAGGCGTCAAACGGAGTGGGCGGTAAAAGTTCTTTCAGAATACGATCCAAATCGCA 592
************************************************************
consensus_2143#0 CTGATGAAGCAACCATAAAACGTGCGGTAGTGATCATCCTTCTTACCTTCTGCGAAGCTC 660
consensus_2143#1 CTGATGAAGCAACCATAAAACGTGCGGTAGTGATCATCCTTCTTACCTTCTGCGAAGCTC 652
************************************************************
consensus_2143#0 TCAGGTTCTTTCCTATAAGAAATGCGGTTGAAATAGGTTGGGACTCCGTTGCCTACATTA 720
consensus_2143#1 TCAGGTTCTTTCCTATAAGAAATGCGGTTGAAATAGGTTGGGACTCCGTTGCCTACATTA 712
************************************************************
consensus_2143#0 CCTCAACCGATGCGGATCGTCTCGTATGTTGGGGACAAATCTCATATATGCTTGAATATA 780
consensus_2143#1 CCTCAACCGATGCGGATCGTCTCGTATGTTGGGGACAAATCTCATATATGCTTGAATATA 772
************************************************************
consensus_2143#0 GTTTTATGTCCGGTCATTCATGGGACTCGGAGGAACAACGTACTCGCCTCAAGAATCTAG 840
consensus_2143#1 GTTTTATGTCCGGTCATTCATGGGACTCGGAGGAACAACGTACTCGCCTCAAGAATCTAG 832
************************************************************
consensus_2143#0 CACGAGATTGTAAAATCTTTAACGAACCTCAGGCACTTGAAACCGTTGATGTGTTAGAGT 900
consensus_2143#1 CACGAGATTGTAAAATCTTTAACGAACCTCAGGCACTTGAAACCGTTGATGTGTTAGAGT 892
************************************************************
consensus_2143#0 ACGGAGCTATCTTAGGTGCTAAAAGTACAAATTGGTTGTATTAATGCAAGGTGTAAGCGC 960
consensus_2143#1 ACGGAGCTATCTTAGGTGCTAAAAGTACAAATTGGTTGTATTAATGCAAGGTGTAAGCCC 952
********************************************************** *
consensus_2143#0 CCTCCTAGCTAATATAGGCGCACTTCCACAATTTATGTACTCCAATATTATGCAACTC 1018
consensus_2143#1 CCTCCTAGCTAATATAGGCGCACTTCCACAAAAAAAAAAAAA---------------- 994
******************************* * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||