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Oryza sativa
cluster # 2149 cluster # 2149       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2149#0 length = 1656 sequences # 2  

consensusID : consensus_2149#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1656
fasta sequence
                              [CAGGCTAAGCCGTGCCGTAAGGGGGGCATTCTCCACACGGGACGGGGCCAAGGCCTTCATGTATGGGTGACAGATCGGCCATAGGAGTACTCCGGGATATACACCAGGGCAACTAATGTCGAGCATACGATGATGCCGCCCGTTTTCATTTCGTGAAAGTCCCCGGCAGAGGAAAGGGCTGTAGGTGATGGCGCGTTCTGCTTCTTAGGGCGATGAAATCGTTCCTATGGGATCGTGCGTGGCAGCTGGTATAGATGATGATGAAAGGCGGGCCGCTTGAACCGGGACCTATTCTCATAATAGGCAGCAAGCAAAGCAAAATAGGAAAGGGGGCGACTGATGACTGCCTTTTTCGTCATAAATAAAAAAAGGGTGGAATGTGGAGCTAATATGGCTGGCTACAAGTATAGCCAAAGAAAGATGAGACGAGACGGACTGTCAGAGGACGCTGCGGGACTACCAGGGGAAAGCCCGCCCCCGCTAGCTAACATAGATATCTATTCTTGGTGCGCATATTCGAGATTTAGAATCTCTTTCCGACCAGGCCAGGCCGAATCGGGCCACCACTTGGGATGGGAATGGCTCAGCCCACATGCATCATTTGATGAAACCAGTCCAGTCGCCTCCGATCAGTGGCTTGTCAACCACCGGACCGTAGCTCCTCACCGAATGCCCCTGCGTTGGGGCAACACAGCACATGACTAGTTCGCTCAAGGACCACACCCTCTCGAGAGCAGGATGCCGGCCGAGATGGAGCGCCAACCTAGACTTTCCTTGGGCTTGCCTTGCCCCAACATCTAAATAAAGGGCGGGCGCCGAAAAGGAAGCAGTGACGCCTTTTCGACGAAAGCTTAGCTTGGTAGGCGCTGCTTACTCACCCTACTCCCTTAGACAATGCAATGCTGTGAACACGAAAGTTTGCAGTTCAGCCCTCTTCTCCCATGCAGAGTCGCAGGCAGCGCCTCGGATAAAAGCACGGACGAGCCACATGCAGGGAAACTTGCACGTGTGGTTCTGGCCGGGGACCCCGGTATACTGTACTAATATGTGTAGGTTCCTGTAATTTGAGTGAGATTGTCATGGCGCAAAAGCAGATATGGTTCGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTTGTCTAGCAGAAACTAATCGAGCTCCGTCTGATCTCCCAGAAGCGGAAGCTGAATTAGTTGCTGGCTATAATGTGGAATATGCGCGGGATGCGATCCTTAATAGTTCACTGTTGGCGGAAGCCAATGTCTCGGGGACTCATTCTGACTTAAACAAGGGGTGGGTCTTTACCAACTTCCAAATCCAAGATTTAGGGAAAAAAAAGAGGGGCAGGGCACTCTTCATTCTTCATTCGAAACTCATGAATGTCGGGTCGGAGGTTTTTGCCTTGTTATCAAAAAGGGGAGTTGGGTAAAGCAAACTCCCTCCTTGGGCGAGCACGGGGCTTAGTCAAGTAGAACCGGGTTGCGCTGCTTGATGCTCCGATCGAAAACAAATCAGTGGGGCCATGCCGGTACGACAGAATATGCGTTAGAAAGGTCCCCCTTTAAAAATAAAGGAAAAACCGGGCCGAACTTCTAAAACTAAAAAGCAGCCCACCCGCTTCCATAGAACAATATCGCGGCAACGTA]

[+] EMBL AK064419             [CAGGCTAAGCCGTGCCGTAAGGGGGGCATTCTCCACACGGGACGGGGCCAAGGCCTTCATGTATGGGTGACAGATCGGCCATAGGAGTACTCCGGGATATACACCAGGGCAACTAATGTCGAGCATACGATGATGCCGCCCGTTTTCATTTCGTGAAAGTCCCCGGCAGAGGAAAGGGCTGTAGGTGATGGCGCGTTCTGCTTCTTAGGGCGATGAAATCGTTCCTATGGGATCGTGCGTGGCAGCTGGTATAGATGATGATGAAAGGCGGGCCGCTTGAACCGGGACCTATTCTCATAATAGGCAGCAAGCAAAGCAAAATAGGAAAGGGGGCGACTGATGACTGCCTTTTTCGTCATAAATAAAAAAAGGGTGGAATGTGGAGCTAATATGGCTGGCTACAAGTATAGCCAAAGAAAGATGAGACGAGACGGACTGTCAGAGGACGCTGCGGGACTACCAGGGGAAAGCCCGCCCCCGCTAGCTAACATAGATATCTATTCTTGGTGCGCATATTCGAGATTTAGAATCTCTTTCCGACCAGGCCAGGCCGAATCGGGCCACCACTTGGGATGGGAATGGCTCAGCCCACATGCATCATTTGATGAAACCAGTCCAGTCGCCTCCGATCAGTGGCTTGTCAACCACCGGACCGTAGCTCCTCACCGAATGCCCCTGCGTTGGGGCAACACAGCACATGACTAGTTCGCTCAAGGACCACACCCTCTCGAGAGCAGGATGCCGGCCGAGATGGAGCGCCAACCTAGACTTTCCTTGGGCTTGCCTTGCCCCAACATCTAAATAAAGGGCGGGCGCCGAAAAGGAAGCAGTGACGCCTTTTCGACGAAAGCTTAGCTTGGTAGGCGCTGCTTACTCACCCTACTCCCTTAGACAATGCAATGCTGTGAACACGAAAGTTTGCAGTTCAGCCCTCTTCTCCCATGCAGAGTCGCAGGCAGCGCCTCGGATAAAAGCACGGACGAGCCACATGCAGGGAAACTTGCACGTGTGGTTCTGGCCGGGGACCCCGGTATACTGTACTAATATGTGTAGGTTCCTGTAATTTGAGTGAGATTGTCATGGCGCAAAAGCAGATATGGTTCGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTTGTCTAGCAGAAACTAATCGAGCTCCGTCTGATCTCCCAGAAGCGGAAGCTGAATTAGTTGCTGGCTATAATGTGGAATATGCGCGGGATGCGATCCTTAATAGTTCACTGTTGGCGGAAGCCAATGTCTCGGGGACTCATTCTGACTTAAACAAGGGGTGGGTCTTTACCAACTTCCAAATCCAAGATTTAGGGAAAAAAAAGAGGGGCAGGGCACTCTTCATTCTTCATTCGAAACTCATGAATGTCGGGTCGGAGGTTTTTGCCTTGTTATCAAAAAGGGGAGTTGGGTAAAGCAAACTCCCTCCTTGGGCGAGCACGGGGCTTAGTCAAGTAGAACCGGGTTGCGCTGCTTGATGCTCCGATCGAAAACAAATCAGTGGGGCCATGCCGGTACGACAGAATATGCGTTAGAAAG                                                                                             ]
[+] EMBL CF340461             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCGTCTGATCT CCAGAAGCGGAAGCTGAATCAGTTGCTGGCTATAATGTGGAATATGCGCGGGATGCGATCCTTAATAGTTCACTGTTGGCGGAAGCCAATGTCTCGGGGACTCATTCTGACTTAAACAAGGGGTGGGTCTTTACCAACTTCCAAATCCAAGATTTAGGGAAAAAAAAGAGGGGCAGGGCACTCTTCATTCTTCATTCGAAACTCATGAATGTCGGGTCGGAGGTTTTTGCCTTGTTATCAAAAAGGGGAGTTGGGTAAAGCAAACTCCCTCCTTGGGCGAGCACGGGGCTTAGTCAAGTAGAACCGGGTTGCGCTGCTTGATGCTCCGATCGAAAACAAATCAGTGGGGCCATGCCGGTACGACAGAATATGCGTTAGAAAGGTCCCCCTTTAAAAATAAAGGAAAAACCGGGCCGAACTTCTAAAACTAAAAAGCAGCCCACCCGCTTCCATAGAACAATATCGCGGCAACGTA]


>consensus_2149#0 CAGGCTAAGCCGTGCCGTAAGGGGGGCATTCTCCACACGGGACGGGGCCAAGGCCTTCAT GTATGGGTGACAGATCGGCCATAGGAGTACTCCGGGATATACACCAGGGCAACTAATGTC GAGCATACGATGATGCCGCCCGTTTTCATTTCGTGAAAGTCCCCGGCAGAGGAAAGGGCT GTAGGTGATGGCGCGTTCTGCTTCTTAGGGCGATGAAATCGTTCCTATGGGATCGTGCGT GGCAGCTGGTATAGATGATGATGAAAGGCGGGCCGCTTGAACCGGGACCTATTCTCATAA TAGGCAGCAAGCAAAGCAAAATAGGAAAGGGGGCGACTGATGACTGCCTTTTTCGTCATA AATAAAAAAAGGGTGGAATGTGGAGCTAATATGGCTGGCTACAAGTATAGCCAAAGAAAG ATGAGACGAGACGGACTGTCAGAGGACGCTGCGGGACTACCAGGGGAAAGCCCGCCCCCG CTAGCTAACATAGATATCTATTCTTGGTGCGCATATTCGAGATTTAGAATCTCTTTCCGA CCAGGCCAGGCCGAATCGGGCCACCACTTGGGATGGGAATGGCTCAGCCCACATGCATCA TTTGATGAAACCAGTCCAGTCGCCTCCGATCAGTGGCTTGTCAACCACCGGACCGTAGCT CCTCACCGAATGCCCCTGCGTTGGGGCAACACAGCACATGACTAGTTCGCTCAAGGACCA CACCCTCTCGAGAGCAGGATGCCGGCCGAGATGGAGCGCCAACCTAGACTTTCCTTGGGC TTGCCTTGCCCCAACATCTAAATAAAGGGCGGGCGCCGAAAAGGAAGCAGTGACGCCTTT TCGACGAAAGCTTAGCTTGGTAGGCGCTGCTTACTCACCCTACTCCCTTAGACAATGCAA TGCTGTGAACACGAAAGTTTGCAGTTCAGCCCTCTTCTCCCATGCAGAGTCGCAGGCAGC GCCTCGGATAAAAGCACGGACGAGCCACATGCAGGGAAACTTGCACGTGTGGTTCTGGCC GGGGACCCCGGTATACTGTACTAATATGTGTAGGTTCCTGTAATTTGAGTGAGATTGTCA TGGCGCAAAAGCAGATATGGTTCGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTA TTTCTTGTCTAGCAGAAACTAATCGAGCTCCGTCTGATCTCCCAGAAGCGGAAGCTGAAT TAGTTGCTGGCTATAATGTGGAATATGCGCGGGATGCGATCCTTAATAGTTCACTGTTGG CGGAAGCCAATGTCTCGGGGACTCATTCTGACTTAAACAAGGGGTGGGTCTTTACCAACT TCCAAATCCAAGATTTAGGGAAAAAAAAGAGGGGCAGGGCACTCTTCATTCTTCATTCGA AACTCATGAATGTCGGGTCGGAGGTTTTTGCCTTGTTATCAAAAAGGGGAGTTGGGTAAA GCAAACTCCCTCCTTGGGCGAGCACGGGGCTTAGTCAAGTAGAACCGGGTTGCGCTGCTT GATGCTCCGATCGAAAACAAATCAGTGGGGCCATGCCGGTACGACAGAATATGCGTTAGA AAGGTCCCCCTTTAAAAATAAAGGAAAAACCGGGCCGAACTTCTAAAACTAAAAAGCAGC CCACCCGCTTCCATAGAACAATATCGCGGCAACGTA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)