cluster # 2154

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Oryza sativa
cluster # 2154 cluster # 2154 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2154#0 length = 871 sequences # 1

consensus_2154#1 length = 495 sequences # 1

consensusID : consensus_2154#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 871
fasta sequence

                              [TACCCGGGCCCCCCCCTTTCGAGGTCGACGGTACTCGACTAAGCTTGATCTTNGGTGAGCCGACGAGACAAGGAGGCACGATCTGCTATACATGCGTGTACCTGCATGCATCCTGACGATGCGTGCGATGGGCCAAACCATAAAGATCTGTCTTCACAGATACAATGCACTTAATGCAGGCATTCATGCTATCGATGGACACATGCCTGAATCAGCGATTGCTGGCTGGTGGGTGAAGGCTTCGCACAAGCTGTGTGTTAAGCGAGTGCGACGAACGAAATCTTTGGCAGAGCTTTCACAGACTCTTGCTGATTGTGTGGGGGCAATGGATGAGGATTGACTGTACAAACGATCATCATCTGTAAGCTTTTGTTCGTATTTGGATGACATTGACATATACTTACAAACAATGCCACACACAACATCAACAGTTGCACTGAGTGTTGTTAAATTGAATGCCCTCATTACGCCTTATTTATAAAGAGCTAATTCTGACAGACCATTGATCGAACAGACAGTGCAGACAAAAACGCGAGCATGCGTGGGGATAGCTAGGAATCGATGATGGAAGTCTTTCTTTTGTGGGACTCCAAGCAAAGCACCCAGCTGACACGCTCTCTCATTAACTGAAAGCTATTTTGTTTGATTGACTAGCTATCTTCTCAATACTGACACAAACATACAGACTGTTTCTTGATCATCAAGCCTTACCAAAAACCATGCCTGGCTAGCTATGTTGGATACCTGCATAACATACTTGCTTCCACCCAACAGACAGACAGTCCTTACGTACGATACGTGACAGGCAGGAAAAGACGTTCTTTTGTTAGTATCATTGACTGCGTCATGCGAATGATTTTGCTCACACACT]

[+] EMBL CA767302             [TACCCGGGCCCCCCCCTTTCGAGGTCGACGGTACTCGACTAAGCTTGATCTTNGGTGAGCCGACGAGACAAGGAGGCACGATCTGCTATACATGCGTGTACCTGCATGCATCCTGACGATGCGTGCGATGGGCCAAACCATAAAGATCTGTCTTCACAGATACAATGCACTTAATGCAGGCATTCATGCTATCGATGGACACATGCCTGAATCAGCGATTGCTGGCTGGTGGGTGAAGGCTTCGCACAAGCTGTGTGTTAAGCGAGTGCGACGAACGAAATCTTTGGCAGAGCTTTCACAGACTCTTGCTGATTGTGTGGGGGCAATGGATGAGGATTGACTGTACAAACGATCATCATCTGTAAGCTTTTGTTCGTATTTGGATGACATTGACATATACTTACAAACAATGCCACACACAACATCAACAGTTGCACTGAGTGTTGTTAAATTGAATGCCCTCATTACGCCTTATTTATAAAGAGCTAATTCTGACAGACCATTGATCGAACAGACAGTGCAGACAAAAACGCGAGCATGCGTGGGGATAGCTAGGAATCGATGATGGAAGTCTTTCTTTTGTGGGACTCCAAGCAAAGCACCCAGCTGACACGCTCTCTCATTAACTGAAAGCTATTTTGTTTGATTGACTAGCTATCTTCTCAATACTGACACAAACATACAGACTGTTTCTTGATCATCAAGCCTTACCAAAAACCATGCCTGGCTAGCTATGTTGGATACCTGCATAACATACTTGCTTCCACCCAACAGACAGACAGTCCTTACGTACGATACGTGACAGGCAGGAAAAGACGTTCTTTTGTTAGTATCATTGACTGCGTCATGCGAATGATTTTGCTCACACACT]




>consensus_2154#0
TACCCGGGCCCCCCCCTTTCGAGGTCGACGGTACTCGACTAAGCTTGATCTTNGGTGAGC
CGACGAGACAAGGAGGCACGATCTGCTATACATGCGTGTACCTGCATGCATCCTGACGAT
GCGTGCGATGGGCCAAACCATAAAGATCTGTCTTCACAGATACAATGCACTTAATGCAGG
CATTCATGCTATCGATGGACACATGCCTGAATCAGCGATTGCTGGCTGGTGGGTGAAGGC
TTCGCACAAGCTGTGTGTTAAGCGAGTGCGACGAACGAAATCTTTGGCAGAGCTTTCACA
GACTCTTGCTGATTGTGTGGGGGCAATGGATGAGGATTGACTGTACAAACGATCATCATC
TGTAAGCTTTTGTTCGTATTTGGATGACATTGACATATACTTACAAACAATGCCACACAC
AACATCAACAGTTGCACTGAGTGTTGTTAAATTGAATGCCCTCATTACGCCTTATTTATA
AAGAGCTAATTCTGACAGACCATTGATCGAACAGACAGTGCAGACAAAAACGCGAGCATG
CGTGGGGATAGCTAGGAATCGATGATGGAAGTCTTTCTTTTGTGGGACTCCAAGCAAAGC
ACCCAGCTGACACGCTCTCTCATTAACTGAAAGCTATTTTGTTTGATTGACTAGCTATCT
TCTCAATACTGACACAAACATACAGACTGTTTCTTGATCATCAAGCCTTACCAAAAACCA
TGCCTGGCTAGCTATGTTGGATACCTGCATAACATACTTGCTTCCACCCAACAGACAGAC
AGTCCTTACGTACGATACGTGACAGGCAGGAAAAGACGTTCTTTTGTTAGTATCATTGAC
TGCGTCATGCGAATGATTTTGCTCACACACT

consensusID : consensus_2154#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 495
fasta sequence

                              [TCTGTGCAGACAAGAACGCGAGCATCGGTGGGATAGCTAGGAATCGATGATGGAATTCTTTCTTTTGTGGTACTCCAAGCAAGCACCCAGCTGACACGTTCTCTCATCAACTGCAAGTTTTTTTGTTTGATTGTCGAGCTTTTTTCTCAAGACTGAGACAACCATAATGTCTCTTCCTTGAGCATCAGGCCTTAGCAGAAGCCATGGCTTCCTAGTTCTGCTGGATACCTGGAGAACATCCTTGTTCCCACCCAACAGAAAGTCGTCCCTTATGTACAATAGTAGACAGGAAAAAAAGGGCTTTTTTTTGGTTAATAATCATTGCTTCCGCCATGTGAATTTTTTTGCTCACAACATTGAGTGATCACGAGGAATACTAAAAACTTCTATATAGGTCATTGCCGGATAGATGATGTATGTTGTTCATGAACTAAGGCGACCCCTTTTGATGCAATAAGAGGGTCAGATATCTCCTTTTTGATCGGTTAAAAAAAA]

[+] EMBL BQ906779             [TCTGTGCAGACAAGAACGCGAGCATCGGTGGGATAGCTAGGAATCGATGATGGAATTCTTTCTTTTGTGGTACTCCAAGCAAGCACCCAGCTGACACGTTCTCTCATCAACTGCAAGTTTTTTTGTTTGATTGTCGAGCTTTTTTCTCAAGACTGAGACAACCATAATGTCTCTTCCTTGAGCATCAGGCCTTAGCAGAAGCCATGGCTTCCTAGTTCTGCTGGATACCTGGAGAACATCCTTGTTCCCACCCAACAGAAAGTCGTCCCTTATGTACAATAGTAGACAGGAAAAAAAGGGCTTTTTTTTGGTTAATAATCATTGCTTCCGCCATGTGAATTTTTTTGCTCACAACATTGAGTGATCACGAGGAATACTAAAAACTTCTATATAGGTCATTGCCGGATAGATGATGTATGTTGTTCATGAACTAAGGCGACCCCTTTTGATGCAATAAGAGGGTCAGATATCTCCTTTTTGATCGGTTAAAAAAAA]




>consensus_2154#1
TCTGTGCAGACAAGAACGCGAGCATCGGTGGGATAGCTAGGAATCGATGATGGAATTCTT
TCTTTTGTGGTACTCCAAGCAAGCACCCAGCTGACACGTTCTCTCATCAACTGCAAGTTT
TTTTGTTTGATTGTCGAGCTTTTTTCTCAAGACTGAGACAACCATAATGTCTCTTCCTTG
AGCATCAGGCCTTAGCAGAAGCCATGGCTTCCTAGTTCTGCTGGATACCTGGAGAACATC
CTTGTTCCCACCCAACAGAAAGTCGTCCCTTATGTACAATAGTAGACAGGAAAAAAAGGG
CTTTTTTTTGGTTAATAATCATTGCTTCCGCCATGTGAATTTTTTTGCTCACAACATTGA
GTGATCACGAGGAATACTAAAAACTTCTATATAGGTCATTGCCGGATAGATGATGTATGT
TGTTCATGAACTAAGGCGACCCCTTTTGATGCAATAAGAGGGTCAGATATCTCCTTTTTG
ATCGGTTAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2154#0      TACCCGGGCCCCCCCCTTTCGAGGTCGACGGTACTCGACTAAGCTTGATCTTNGGTGAGC 60
consensus_2154#1      ------------------------------------------------------------
                                                                                  

consensus_2154#0      CGACGAGACAAGGAGGCACGATCTGCTATACATGCGTGTACCTGCATGCATCCTGACGAT 120
consensus_2154#1      ------------------------------------------------------------
                                                                                  

consensus_2154#0      GCGTGCGATGGGCCAAACCATAAAGATCTGTCTTCACAGATACAATGCACTTAATGCAGG 180
consensus_2154#1      ------------------------------------------------------------
                                                                                  

consensus_2154#0      CATTCATGCTATCGATGGACACATGCCTGAATCAGCGATTGCTGGCTGGTGGGTGAAGGC 240
consensus_2154#1      ------------------------------------------------------------
                                                                                  

consensus_2154#0      TTCGCACAAGCTGTGTGTTAAGCGAGTGCGACGAACGAAATCTTTGGCAGAGCTTTCACA 300
consensus_2154#1      ------------------------------------------------------------
                                                                                  

consensus_2154#0      GACTCTTGCTGATTGTGTGGGGGCAATGGATGAGGATTGACTGTACAAACGATCATCATC 360
consensus_2154#1      ------------------------------------------------------------
                                                                                  

consensus_2154#0      TGTAAGCTTTTGTTCGTATTTGGATGACATTGACATATACTTACAAACAATGCCACACAC 420
consensus_2154#1      ------------------------------------------------------------
                                                                                  

consensus_2154#0      AACATCAACAGTTGCACTGAGTGTTGTTAAATTGAATGCCCTCATTACGCCTTATTTATA 480
consensus_2154#1      ------------------------------------------------------------
                                                                                  

consensus_2154#0      AAGAGCTAATTCTGACAGACCATTGATCGAACAGACAGTGCAGACAAAAACGCGAGCATG 540
consensus_2154#1      ----------------------------------TCTGTGCAGACAAGAACGCGAGCATC 26
                                                         * ********** *********** 

consensus_2154#0      CGTGGGGATAGCTAGGAATCGATGATGGAAGTCTTTCTTTTGTGGGACTCCAAGCAAAGC 600
consensus_2154#1      GGTGGG-ATAGCTAGGAATCGATGATGGAATTCTTTCTTTTGTGGTACTCCAAGCAA-GC 84
                       ***** *********************** ************** *********** **

consensus_2154#0      ACCCAGCTGACACGCTCTCTCATTAACTGAAAGCTATTTTGTTTGATTGACTAGCTATCT 660
consensus_2154#1      ACCCAGCTGACACGTTCTCTCATCAACTGCAAGTTTTTTTGTTTGATTGTCGAGCTTTTT 144
                      ************** ******** ***** *** * ************* * **** * *

consensus_2154#0      TCTCAATACTGACACAAACATACAGACTGTTTCTTGATCATCAAGCCTTACCAAAAACCA 720
consensus_2154#1      TCTCAAGACTGAGACAACCATAATGTCTCTTCCTTGAGCATCAGGCCTTAGCAGAAGCCA 204
                      ****** ***** **** ****  * ** ** ***** ***** ****** ** ** ***

consensus_2154#0      TGCCTGGCTAGCTATGTTGGATACCTGCATAACATACTTGCTTCCACCCAACAGACAGAC 780
consensus_2154#1      TGGCTTCCTAGTTCTGCTGGATACCTGGAGAACATCCTTGTTCCCACCCAACAGAAAGTC 264
                      ** **  **** * ** ********** * ***** **** * ************ ** *

consensus_2154#0      AGTCCTTACGTACGATACGTGACAGGCAGGAAAAGACGTTCTTTTG-TTAGTA-TCATTG 838
consensus_2154#1      GTCCCTTATGTACAATAGTAGACAGGAAAAAAAGGGCTTTTTTTTGGTTAATAATCATTG 324
                         ***** **** ***   ****** *  *** * * ** ***** *** ** ******

consensus_2154#0      ACTGCGTCATGCGAATGATTTTGCTCACA-CACT-------------------------- 871
consensus_2154#1      CTTCCGCCATGTGAATTTTTTTGCTCACAACATTGAGTGATCACGAGGAATACTAAAAAC 384
                        * ** **** ****  *********** ** *                          

consensus_2154#0      ------------------------------------------------------------
consensus_2154#1      TTCTATATAGGTCATTGCCGGATAGATGATGTATGTTGTTCATGAACTAAGGCGACCCCT 444
                                                                                  

consensus_2154#0      ---------------------------------------------------
consensus_2154#1      TTTGATGCAATAAGAGGGTCAGATATCTCCTTTTTGATCGGTTAAAAAAAA 495