These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2159#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [GAGGACGAGACAAGGAGACGAGTGACTCTGCAAACTGAACAGAAAGAAGCAATGCAGAAAGGACCTTCAAATCTGCAGCAGTAGCATGAAACCATGCCATATACACTAAACTGTTGCCAGAATAGCCTAATTATCCTGGATATGTTTAAGTTCTGGAGTGTGTCCATTTCTGGAAATTTATCTATTGTCTTGTCAGTTTAGCGCCGTGGAGCCTATCCGTGGACATCTCTGCAGTTAAGAAACATCATATTGACCTTGTTATATGAGAAATCCTGCACTTTTATCTCAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA766301 [GAGGACGAGACAAGGAGACGAGTGACTCTGCAAACTGAACAGAAAGAAGCAATGCAGAAAGGACCTTCAAATCTGCAGCAGTAGCATGAAACCATGCCATATACACTAAACTGTTGCCAGAATAGCCTAATTATCCTGGATATGTTTAAGTTCTGGAGTGTGTCCATTTCTGGAAATTTATCTATTGTCTTGTCAGTTTAGCGCCGTGGAGCCTATCCGTGGACATCTCTGCAGTTAAGAAACATCATATTGACCTTGTTATATGAGAAATCCTGCACTTTTATCTCAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_2159#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [AACCCACTGCCACTATTACACCTAAACTCGTTGCCACGAATAGCCTAATTATCCTGGATATGTTTAAGTTCTGGAGTGTGTCCACTTTCTGGAAATTTATCTATTGTCTTGTCACGTTTAGCGCCGTGGAGGCCTATTCCGTGGACATCTCTGCAGTTAAGAAACATCATATTGACCCTTGTTATATGAGAAATCCTGCACTTTTATCTCCATGGTACGCCTCCGAATAAAAAATATCCAGTCCATGCCCTCTGGTTTTAAAAAAAAAA] [+] EMBL BQ906717 [AACCCACTGCCACTATTACACCTAAACTCGTTGCCACGAATAGCCTAATTATCCTGGATATGTTTAAGTTCTGGAGTGTGTCCACTTTCTGGAAATTTATCTATTGTCTTGTCACGTTTAGCGCCGTGGAGGCCTATTCCGTGGACATCTCTGCAGTTAAGAAACATCATATTGACCCTTGTTATATGAGAAATCCTGCACTTTTATCTCCATGGTACGCCTCCGAATAAAAAATATCCAGTCCATGCCCTCTGGTTTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2159#0 GAGGACGAGACAAGGAGACGAGTGACTCTGCAAACTGAACAGAAAGAAGCAATGCAGAAA 60 consensus_2159#1 ------------------------------------------------------------ consensus_2159#0 GGACCTTCAAATCTGCAGCAGTAGCATGAAACCATGCCATATACACTAAACTGTTGCCA- 119 consensus_2159#1 ----------------------AACCCACTGCCAC-TATTACACCTAAACTCGTTGCCAC 37 * * *** ** ** ** ******* consensus_2159#0 GAATAGCCTAATTATCCTGGATATGTTTAAGTTCTGGAGTGTGTCCA-TTTCTGGAAATT 178 consensus_2159#1 GAATAGCCTAATTATCCTGGATATGTTTAAGTTCTGGAGTGTGTCCACTTTCTGGAAATT 97 *********************************************** ************ consensus_2159#0 TATCTATTGTCTTGTCA-GTTTAGCGCCGTGGAG-CCTAT-CCGTGGACATCTCTGCAGT 235 consensus_2159#1 TATCTATTGTCTTGTCACGTTTAGCGCCGTGGAGGCCTATTCCGTGGACATCTCTGCAGT 157 ***************** **************** ***** ******************* consensus_2159#0 TAAGAAACATCATATTGACC-TTGTTATATGAGAAATCCTGCACTTTTATCTCAAAAAAA 294 consensus_2159#1 TAAGAAACATCATATTGACCCTTGTTATATGAGAAATCCTGCACTTTTATCTCCATGGTA 217 ******************** ******************************** * * consensus_2159#0 -------AAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA-- 337 consensus_2159#1 CGCCTCCGAATAAAAAATATCCAGTCCATGCCCTCTGGTTTTAAAAAAAAAA 269 ** ****** * ** * ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||