cluster # 2163

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Oryza sativa
cluster # 2163 cluster # 2163 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2163#0 length = 488 sequences # 1

consensus_2163#1 length = 121 sequences # 1

consensusID : consensus_2163#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 488
fasta sequence

                              [TTATTAACCCTGATAGGTCAATCTAGCCTCCATGTTCGCTGTCCAAAAATGCAAGACCGACACTTCTGCCTTGATTGCGATATTTACATCCATGAGAGCTTGCACAATTGCCCAGGTTGCGAGAGTCAGCGTAGTTCTTCATAGGGATGCCACTTGTGGTGTTAATCTTTGTCTTTTTAACTCAAGAAGCTACCCGTTGCTGTAAGCTTTCTCGTACACTGACATTGGTAGGCGATGTTGTGAGGTAATCAAACAGTGTACAGATGATATAGTGCCCGGCCTCCATTTTGTTGACGCTTCCTGTTCATTTAGATGGAGTAGCTAGTTAAGCTATTTTGATACAGAGTACTGGTCAAAGAGTTGTTGAAGCCATAGCATTGTTGCTGAGGGGAGGTGTTAGAAATGTACATGCGACTGAAAAGTGAAAACTTGTAACTCTTGCCGTTTTTCTGAGGCAAAGATGTATTCTTTCAGTGTCAAAAAAAAAA]

[+] EMBL BI812123             [TTATTAACCCTGATAGGTCAATCTAGCCTCCATGTTCGCTGTCCAAAAATGCAAGACCGACACTTCTGCCTTGATTGCGATATTTACATCCATGAGAGCTTGCACAATTGCCCAGGTTGCGAGAGTCAGCGTAGTTCTTCATAGGGATGCCACTTGTGGTGTTAATCTTTGTCTTTTTAACTCAAGAAGCTACCCGTTGCTGTAAGCTTTCTCGTACACTGACATTGGTAGGCGATGTTGTGAGGTAATCAAACAGTGTACAGATGATATAGTGCCCGGCCTCCATTTTGTTGACGCTTCCTGTTCATTTAGATGGAGTAGCTAGTTAAGCTATTTTGATACAGAGTACTGGTCAAAGAGTTGTTGAAGCCATAGCATTGTTGCTGAGGGGAGGTGTTAGAAATGTACATGCGACTGAAAAGTGAAAACTTGTAACTCTTGCCGTTTTTCTGAGGCAAAGATGTATTCTTTCAGTGTCAAAAAAAAAA]




>consensus_2163#0
TTATTAACCCTGATAGGTCAATCTAGCCTCCATGTTCGCTGTCCAAAAATGCAAGACCGA
CACTTCTGCCTTGATTGCGATATTTACATCCATGAGAGCTTGCACAATTGCCCAGGTTGC
GAGAGTCAGCGTAGTTCTTCATAGGGATGCCACTTGTGGTGTTAATCTTTGTCTTTTTAA
CTCAAGAAGCTACCCGTTGCTGTAAGCTTTCTCGTACACTGACATTGGTAGGCGATGTTG
TGAGGTAATCAAACAGTGTACAGATGATATAGTGCCCGGCCTCCATTTTGTTGACGCTTC
CTGTTCATTTAGATGGAGTAGCTAGTTAAGCTATTTTGATACAGAGTACTGGTCAAAGAG
TTGTTGAAGCCATAGCATTGTTGCTGAGGGGAGGTGTTAGAAATGTACATGCGACTGAAA
AGTGAAAACTTGTAACTCTTGCCGTTTTTCTGAGGCAAAGATGTATTCTTTCAGTGTCAA
AAAAAAAA

consensusID : consensus_2163#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 121
fasta sequence

                              [TTTTTTTTTGACTATGACACTGAAAGAATACATCTTTGCCTCAAAAAAACGGCAAGAGTTACAAGTTTTCATTTTTCAGTCGCATTGTACATTTCTAACACCTCCCCTTGTCTCGTCCTCT]

[+] EMBL CA760738             [TTTTTTTTTGACTATGACACTGAAAGAATACATCTTTGCCTCAAAAAAACGGCAAGAGTTACAAGTTTTCATTTTTCAGTCGCATTGTACATTTCTAACACCTCCCCTTGTCTCGTCCTCT]




>consensus_2163#1
TTTTTTTTTGACTATGACACTGAAAGAATACATCTTTGCCTCAAAAAAACGGCAAGAGTT
ACAAGTTTTCATTTTTCAGTCGCATTGTACATTTCTAACACCTCCCCTTGTCTCGTCCTC
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2163#0      TTATTAACCCTGATAGGTCAATCTAGCCTCCATGTTCGCTGTCCAAAAATGCAAGACCGA 60
consensus_2163#1      ------------------------------------------------------------
                                                                                  

consensus_2163#0      CACTTCTGCCTTGATTGCGATATTTACATCCATGAGAGCTTGCACAATTGCCCAGGTTGC 120
consensus_2163#1      ---TTTTTTTTTGACTATGACACTGA-AAGAATACATCTTTGC---CTCAAAAAAACGGC 53
                         ** *   **** *  ** * * * *   **      ****    *     *    **

consensus_2163#0      GAGAGTCAGCGTAGTTCTTCATAGGGATGCCACTTGTGGTGTTAATCTTTGTCTTTTTAA 180
consensus_2163#1      AAGAGTTA---CAAGTTTTCATT----TTTCAGTCGCATTGTACATTTCTAACACCTCCC 106
                       ***** *    *  * *****     *  ** * *   ***  ** * *  *   *   

consensus_2163#0      CTCAAGAAGCTACCCGTTGCTGTAAGCTTTCTCGTACACTGACATTGGTAGGCGATGTTG 240
consensus_2163#1      CTTGTCTCGTCCTCT--------------------------------------------- 121
                      **      *    *                                              

consensus_2163#0      TGAGGTAATCAAACAGTGTACAGATGATATAGTGCCCGGCCTCCATTTTGTTGACGCTTC 300
consensus_2163#1      ------------------------------------------------------------
                                                                                  

consensus_2163#0      CTGTTCATTTAGATGGAGTAGCTAGTTAAGCTATTTTGATACAGAGTACTGGTCAAAGAG 360
consensus_2163#1      ------------------------------------------------------------
                                                                                  

consensus_2163#0      TTGTTGAAGCCATAGCATTGTTGCTGAGGGGAGGTGTTAGAAATGTACATGCGACTGAAA 420
consensus_2163#1      ------------------------------------------------------------
                                                                                  

consensus_2163#0      AGTGAAAACTTGTAACTCTTGCCGTTTTTCTGAGGCAAAGATGTATTCTTTCAGTGTCAA 480
consensus_2163#1      ------------------------------------------------------------
                                                                                  

consensus_2163#0      AAAAAAAA 488
consensus_2163#1      --------