cluster # 2165

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Oryza sativa
cluster # 2165 cluster # 2165 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2165#0 length = 213 sequences # 1

consensus_2165#1 length = 159 sequences # 1

consensusID : consensus_2165#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 213
fasta sequence

                              [CGATTCCGGCCGCGTCACCCAAGAATTGGTGCGTGCGTGGCCAAAGATTCCAATATCTTGTCGACATTTCGTCCTGAATTTCACTCTCTTGTTGATGTGTTCATCATGCGTCCTCTTCTGCCTTCCTGTGTCATTGTCCCTGTCCTACTCCCACAGTGTATTCCCAATTTGTTACACTACTGGTGCTACTATTGATGTGTCTCTAGTGAAAAA]

[+] EMBL AU172456             [CGATTCCGGCCGCGTCACCCAAGAATTGGTGCGTGCGTGGCCAAAGATTCCAATATCTTGTCGACATTTCGTCCTGAATTTCACTCTCTTGTTGATGTGTTCATCATGCGTCCTCTTCTGCCTTCCTGTGTCATTGTCCCTGTCCTACTCCCACAGTGTATTCCCAATTTGTTACACTACTGGTGCTACTATTGATGTGTCTCTAGTGAAAAA]




>consensus_2165#0
CGATTCCGGCCGCGTCACCCAAGAATTGGTGCGTGCGTGGCCAAAGATTCCAATATCTTG
TCGACATTTCGTCCTGAATTTCACTCTCTTGTTGATGTGTTCATCATGCGTCCTCTTCTG
CCTTCCTGTGTCATTGTCCCTGTCCTACTCCCACAGTGTATTCCCAATTTGTTACACTAC
TGGTGCTACTATTGATGTGTCTCTAGTGAAAAA

consensusID : consensus_2165#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 159
fasta sequence

                              [CGATTCCGGCCGCGTCNCCCAAGAATTGGTGCGTGCGTGGCCAAAGATTCCAATATNTTGTCGACATTTCGTCCTGAATTTCACTCTCTTGTTGNTGTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU030162             [CGATTCCGGCCGCGTCNCCCAAGAATTGGTGCGTGCGTGGCCAAAGATTCCAATATNTTGTCGACATTTCGTCCTGAATTTCACTCTCTTGTTGNTGTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_2165#1
CGATTCCGGCCGCGTCNCCCAAGAATTGGTGCGTGCGTGGCCAAAGATTCCAATATNTTG
TCGACATTTCGTCCTGAATTTCACTCTCTTGTTGNTGTGTTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2165#0      CGATTCCGGCCGCGTCACCCAAGAATTGGTGCGTGCGTGGCCAAAGATTCCAATATCTTG 60
consensus_2165#1      CGATTCCGGCCGCGTCNCCCAAGAATTGGTGCGTGCGTGGCCAAAGATTCCAATATNTTG 60
                      **************** *************************************** ***

consensus_2165#0      TCGACATTTCGTCCTGAATTTCACTCTCTTGTTGATGTGTTCATCATGCGTCCTCTTCTG 120
consensus_2165#1      TCGACATTTCGTCCTGAATTTCACTCTCTTGTTGNTGTGTTCAAAAAAAAAAAAAAAAAA 120
                      ********************************** ********  *              

consensus_2165#0      CCTTCCTGTGTCATTGTCCCTGTCCTACTCCCACAGTGTATTCCCAATTTGTTACACTAC 180
consensus_2165#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------- 159
                                  *             *     * *                         

consensus_2165#0      TGGTGCTACTATTGATGTGTCTCTAGTGAAAAA 213
consensus_2165#1      ---------------------------------