cluster # 2172

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Oryza sativa
cluster # 2172 cluster # 2172 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2172#0 length = 391 sequences # 1

consensus_2172#1 length = 353 sequences # 1

consensusID : consensus_2172#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTACGNGGAATCATCCATTCTTTCTTGCCATTTCTGNGGTATTCTTCTTTCTTGGNCAGGNCAGCACAGGTGAGAGATGGTACCTCTCACACCTGTGNTGTCCTNTCCAAGAAAGAAGAAGAAGAAGAAAAAAGAGAAGAAAAAGGGGAGAAGAAAAACGGNCGNTCATGNGGTAGTCCATGTNATATAGAATCACAACAAGNAGGNTCACCAAACTTTTCCCTGTTGGAAAATNTTATATGCTTGGGCAGCATTGACANTGGTTNTGAAGGCANGTTGGCAANTGGCAAGCATAGTGGCGTTTAGCCCTTCTCCTCTGGCTGTAATTATTCCCNAAATTTTGGTAT]

[+] EMBL AU175216             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTACGNGGAATCATCCATTCTTTCTTGCCATTTCTGNGGTATTCTTCTTTCTTGGNCAGGNCAGCACAGGTGAGAGATGGTACCTCTCACACCTGTGNTGTCCTNTCCAAGAAAGAAGAAGAAGAAGAAAAAAGAGAAGAAAAAGGGGAGAAGAAAAACGGNCGNTCATGNGGTAGTCCATGTNATATAGAATCACAACAAGNAGGNTCACCAAACTTTTCCCTGTTGGAAAATNTTATATGCTTGGGCAGCATTGACANTGGTTNTGAAGGCANGTTGGCAANTGGCAAGCATAGTGGCGTTTAGCCCTTCTCCTCTGGCTGTAATTATTCCCNAAATTTTGGTAT]




>consensus_2172#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTACGNGGAATCATCC
ATTCTTTCTTGCCATTTCTGNGGTATTCTTCTTTCTTGGNCAGGNCAGCACAGGTGAGAG
ATGGTACCTCTCACACCTGTGNTGTCCTNTCCAAGAAAGAAGAAGAAGAAGAAAAAAGAG
AAGAAAAAGGGGAGAAGAAAAACGGNCGNTCATGNGGTAGTCCATGTNATATAGAATCAC
AACAAGNAGGNTCACCAAACTTTTCCCTGTTGGAAAATNTTATATGCTTGGGCAGCATTG
ACANTGGTTNTGAAGGCANGTTGGCAANTGGCAAGCATAGTGGCGTTTAGCCCTTCTCCT
CTGGCTGTAATTATTCCCNAAATTTTGGTAT

consensusID : consensus_2172#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [AAACAAGAAACCCAAAAAGCAGAAAAACAAAGAGAAGATGAAGAACAAAGAAAAAAAAGAAGAAGAAGAAGAAAAAAGAGAAGAAAAAGGGGAGAAGAAAAACGGACGATCATGAGGTAGTCCATGTCATATAGAATCACAACAAGTAGGATCACCAAACTTTCCCTGTTGGAAAATGATATATGCTTGGGCAGCATTGACAGTGGATGTGAAGGCAAGTTGGCAAATGGCAAGCATAGTGGCGTCTTAGCCCTCCTCCTCTGGCTGTAATTATTCCCTAATTTTTGTATCTTCTCTTTTTCTTCCCTGGATGCATAATCATTGTTGTATACTGATTTTGAAATGCAAAAAAA]

[+] EMBL AU070904             [AAACAAGAAACCCAAAAAGCAGAAAAACAAAGAGAAGATGAAGAACAAAGAAAAAAAAGAAGAAGAAGAAGAAAAAAGAGAAGAAAAAGGGGAGAAGAAAAACGGACGATCATGAGGTAGTCCATGTCATATAGAATCACAACAAGTAGGATCACCAAACTTTCCCTGTTGGAAAATGATATATGCTTGGGCAGCATTGACAGTGGATGTGAAGGCAAGTTGGCAAATGGCAAGCATAGTGGCGTCTTAGCCCTCCTCCTCTGGCTGTAATTATTCCCTAATTTTTGTATCTTCTCTTTTTCTTCCCTGGATGCATAATCATTGTTGTATACTGATTTTGAAATGCAAAAAAA]




>consensus_2172#1
AAACAAGAAACCCAAAAAGCAGAAAAACAAAGAGAAGATGAAGAACAAAGAAAAAAAAGA
AGAAGAAGAAGAAAAAAGAGAAGAAAAAGGGGAGAAGAAAAACGGACGATCATGAGGTAG
TCCATGTCATATAGAATCACAACAAGTAGGATCACCAAACTTTCCCTGTTGGAAAATGAT
ATATGCTTGGGCAGCATTGACAGTGGATGTGAAGGCAAGTTGGCAAATGGCAAGCATAGT
GGCGTCTTAGCCCTCCTCCTCTGGCTGTAATTATTCCCTAATTTTTGTATCTTCTCTTTT
TCTTCCCTGGATGCATAATCATTGTTGTATACTGATTTTGAAATGCAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2172#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTACGNGGAATCATCC 60
consensus_2172#1      ------------------------------------------------------------
                                                                                  

consensus_2172#0      ATTCTTTCTTGCCATTTCTGNGGTATTCTTCTTTCTTGGNCAGGNCAGCACAGGTGAGAG 120
consensus_2172#1      -------------------------------------AAACAAGA-AACCCAAAAAGCAG 22
                                                              ** *  * * **      **

consensus_2172#0      ATGGTACCTCTCACACCTGTGNTGTCCTNTCCAAGAAAGAAGAAGAAGAAGAAAAAAGAG 180
consensus_2172#1      AAAA-ACAAAGAGAAGATGAAGAA-CAAAGAAAAAAAAGAAGAAGAAGAAGAAAAAAGAG 80
                      *    **       *  **      *      ** *************************

consensus_2172#0      AAGAAAAAGGGGAGAAGAAAAACGGNCGNTCATGNGGTAGTCCATGTNATATAGAATCAC 240
consensus_2172#1      AAGAAAAAGGGGAGAAGAAAAACGGACGATCATGAGGTAGTCCATGTCATATAGAATCAC 140
                      ************************* ** ***** ************ ************

consensus_2172#0      AACAAGNAGGNTCACCAAACTTTTCCCTGTTGGAAAATNTTATATGCTTGGGCAGCATTG 300
consensus_2172#1      AACAAGTAGGATCACCAAACTTT-CCCTGTTGGAAAATGATATATGCTTGGGCAGCATTG 199
                      ****** *** ************ **************  ********************

consensus_2172#0      ACANTGGTTNTGAAGGCANGTTGGCAANTGGCAAGCATAGTGGCGT-TTAGCCCTTCTCC 359
consensus_2172#1      ACAGTGGATGTGAAGGCAAGTTGGCAAATGGCAAGCATAGTGGCGTCTTAGCCCTCCTCC 259
                      *** *** * ******** ******** ****************** ******** ****

consensus_2172#0      TCTGGCTGTAATTATTCCCNAAATTTTGGTAT---------------------------- 391
consensus_2172#1      TCTGGCTGTAATTATTCCCTAA-TTTTTGTATCTTCTCTTTTTCTTCCCTGGATGCATAA 318
                      ******************* ** **** ****                            

consensus_2172#0      -----------------------------------
consensus_2172#1      TCATTGTTGTATACTGATTTTGAAATGCAAAAAAA 353