These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [TCAAAATGCCTTTCTGTTGATGTTGGCATATACATCATGTTGTGCAGCTAGAAACGATGAAAGCGTCAGTACTGTTCTATTGCTCGTTAGAGTTTGCTTTAAACAATGAATATCTAATTATCTTACTTATAGAACCGGGGTCTTCCTGAATACCGGCACTTTTATTTCCAAATCACTAGTACTTCCTCGGTAACAGCCAGGCTAACAACAACCTAACGTAGATCAACCGGGACAAGCTCTACAGGAGAACGTGGCGACAAAGCTAGCAGAAAAATGGTAAAAAAGAAAAGAAAAGCTGTTCCTAAGGTGAGTTGGGTGGGCTTCAGTTGTATAGCAGCACTAGGAAAGTAGTGAAGCTGCTGCTTGCCAGTACGAGGATCCAGCCCTTGCTCGCCCCGCACATCCTCTCCGCCGCCGCCGCCCCCTTCCTGGTGAAGAGGAACAGCACCCTGTCGCACGCCAGCTTGAACAGCGCCAGGCACGCGAAGAAGAGGCTGA] [+] EMBL CK085113 [TCAAAATGCCTTTCTGTTGATGTTGGCATATACATCATGTTGTGCAGCTAGAAACGATGAAAGCGTCAGTACTGTTCTATTGCTCGTTAGAGTTTGCTTTAAACAATGAATATCTAATTATCTTACTTATAGAACCGGGGTCTTCCTGAATACCGGCACTTTTATTTCCAAATCACTAGTACTTCCTCGGTAACAGCCAGGCTAACAACAACCTAACGTAGATCAACCGGGACAAGCTCTACAGGAGAACGTGGCGACAAAGCTAGCAGAAAAATGGTAAAAAAGAAAAGAAAAGCTGTTCCTAAGGTGAGTTGGGTGGGCTTCAGTTGTATAGCAGCACTAGGAAAGTAGTGAAGCTGCTGCTTGCCAGTACGAGGATCCAGCCCTTGCTCGCCCCGCACATCCTCTCCGCCGCCGCCGCCCCCTTCCTGGTGAAGAGGAACAGCACCCTGTCGCACGCCAGCTTGAACAGCGCCAGGCACGCGAAGAAGAGGCTGA] consensusID : consensus_2173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAATACCGGCACTTTTATTTCCAAATCACTAGTACTTCCTCGGTAACAGCCAGGNTAACAACAACCTAACGTAGATCAACCGGGACAAGNTNTACAGGAGAACGTGGCGACAAAGNTAGCAGAAAAATGGTAAAAAAGAAAAGAAAAGNTGTTCCTAAGGTGAGTTGGGTGGGNTTCAGTTGTNTAGCAGCACTAGGAAAGTAGTGAAGCTGCTGCTTGCCAGTACGAGGATCCAGCCCTTG] [-] EMBL C98678 [TTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAATACCGGCACTTTTATTTCCAAATCACTAGTACTTCCTCGGTAACAGCCAGGNTAACAACAACCTAACGTAGATCAACCGGGACAAGNTNTACAGGAGAACGTGGCGACAAAGNTAGCAGAAAAATGGTAAAAAAGAAAAGAAAAGNTGTTCCTAAGGTGAGTTGGGTGGGNTTCAGTTGTNTAGCAGCACTAGGAAAGTAGTGAAGCTGCTGCTTGCCAGTACGAGGATCCAGCCCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2173#0 TCAAAATGCCTTTCTGTTGATGTTGGCATATACATCATGTTGTGCAGCTAGAAACGATGA 60 consensus_2173#1 ------------------------------------------------------------ consensus_2173#0 AAGCGTCAGTACTGTTCTATTGCTCGTTAGAGTTTGCTTTAAACAATGAATATCTAATTA 120 consensus_2173#1 ----------------------------------------------------------TT 2 * consensus_2173#0 TCTTACTTATAGAACCGGGGTCTTCCTGAATACCGGCACTTTTATTTCCAAATCACTAGT 180 consensus_2173#1 TTTTTTTTTTTTTTTTTTTTTTTTCCTGAATACCGGCACTTTTATTTCCAAATCACTAGT 62 * ** ** * * ************************************** consensus_2173#0 ACTTCCTCGGTAACAGCCAGGCTAACAACAACCTAACGTAGATCAACCGGGACAAGCTCT 240 consensus_2173#1 ACTTCCTCGGTAACAGCCAGGNTAACAACAACCTAACGTAGATCAACCGGGACAAGNTNT 122 ********************* ********************************** * * consensus_2173#0 ACAGGAGAACGTGGCGACAAAGCTAGCAGAAAAATGGTAAAAAAGAAAAGAAAAGCTGTT 300 consensus_2173#1 ACAGGAGAACGTGGCGACAAAGNTAGCAGAAAAATGGTAAAAAAGAAAAGAAAAGNTGTT 182 ********************** ******************************** **** consensus_2173#0 CCTAAGGTGAGTTGGGTGGGCTTCAGTTGTATAGCAGCACTAGGAAAGTAGTGAAGCTGC 360 consensus_2173#1 CCTAAGGTGAGTTGGGTGGGNTTCAGTTGTNTAGCAGCACTAGGAAAGTAGTGAAGCTGC 242 ******************** ********* ***************************** consensus_2173#0 TGCTTGCCAGTACGAGGATCCAGCCCTTGCTCGCCCCGCACATCCTCTCCGCCGCCGCCG 420 consensus_2173#1 TGCTTGCCAGTACGAGGATCCAGCCCTTG------------------------------- 271 ***************************** consensus_2173#0 CCCCCTTCCTGGTGAAGAGGAACAGCACCCTGTCGCACGCCAGCTTGAACAGCGCCAGGC 480 consensus_2173#1 ------------------------------------------------------------ consensus_2173#0 ACGCGAAGAAGAGGCTGA 498 consensus_2173#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||