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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2176#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 799 fasta sequence
[ATCTTGTGCGGTGCTTAGGTGCATACTGTTACCTTGTTGCACGTTGAACTGTGGGGATTATAAAAGGGTGCACTCCAGTTCTGTCTTGGATAGGCGCATGCTTTCCGCCTCTCCTTTTTGTCTCACTACTTTATTCCATTTTTATTTCAATTTTTTTGGTGAAAAAACATCTAGTTAATTACCTTAATCCCTCTTAACATACTAATCTGTAATACACCCCTTTAAAAGTTAGCCTCACTCCTGTACTGGTATTTTATTTTTATGAATCGAATAGCTTATCCCCTATTTCTATGAAATAGTCACGACTCACTAAATACATTAATTTGTTATATGGGAGCTCTCAAATTTAGCCCTGTCATAAATTGTTCAGCCATTGGATCGAAGTGGCTATGAGATATCAACTATCATATCAATGTTTTTTTTTATCAAAGGAGTTCTAATGTCCTGCTATGATGCGAGGGGCATCTACTAGTTATACGTAGCCAGCAATTTATTTTTTCTGAAGGGAGGGAGTATGTGGGTAGTACTTTTGCTCAAATATTTAGGGGAGAAAAGAACCCATAACTTCATTTACAAAGTTAATTCTTCTCTAAATACATACTCCATTCGCCCATAAATATAAGGGATTTTTATTGGATGTAAGTATCCTAGTACTACGAGTGAATTTGGATAGGAGTATGTCCAGATTCGTAGTATTAGGATACATCCCATCCACCCAAAATCCCTTATATTTTGGTACGGGATGGAGTATTCAACTAGATATCAGCTNTGATATTATNTNTACCATAGCAATAACCAA]
[+] EMBL CA764554 [ATCTTGTGCGGTGCTTAGGTGCATACTGTTACCTTGTTGCACGTTGAACTGTGGGGATTATAAAAGGGTGCACTCCAGTTCTGTCTTGGATAGGCGCATGCTTTCCGCCTCTCCTTTTTGTCTCACTACTTTATTCCATTTTTATTTCAATTTTTTTGGTGAAAAAACATCTAGTTAATTACCTTAATCCCTCTTAACATACTAATCTGTAATACACCCCTTTAAAAGTTAGCCTCACTCCTGTACTGGTATTTTATTTTTATGAATCGAATAGCTTATCCCCTATTTCTATGAAATAGTCACGACTCACTAAATACATTAATTTGTTATATGGGAGCTCTCAAATTTAGCCCTGTCATAAATTGTTCAGCCATTGGATCGAAGTGGCTATGAGATATCAACTATCATATCAATGTTTTTTTTTATCAAAGGAGTTCTAATGTCCTGCTATGATGCGAGGGGCATCTACTAGTTATACGTAGCCAGCAATTTATTTTTTCTGAAGGGAGGGAGTATGTGGGTAGTACTTTTGCTCAAATATTTAGGGGAGAAAAGAACCCATAACTTCATTTACAAAGTTAATTCTTCTCTAAATACATACTCCATTCGCCCATAAATATAAGGGATTTTTATTGGATGTAAGTATCCTAGTACTACGAGTGAATTTGGATAGGAGTATGTCCAGATTCGTAGTATTAGGATACATCCCATCCACCCAAAATCCCTTATATTTTGGTACGGGATGGAGTATTCAACTAGATATCAGCTNTGATATTATNTNTACCATAGCAATAACCAA]
consensusID : consensus_2176#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence
[GAACATGCATGCATAGTTAATTGATTAATTAGGTTTGTTGATGATATGGTCCAGCTACGAACAATCTAATGAATACTTTGGTTTCGGTCGTCACTACTAGTAGTTAGTAAATGGGATAAAATCGATTTGATCTCCAGGCCAATTGGGTATTTTTGACACCATTCAATTTTCAATATTGTTAGACTAATTTAGGGTGGTTAAATGCTCCCTCCGTCCCTAAATATAAGAGATTTTGGTTGGATGTGACGTATTCTAGTACTGTGAATCTAGATAGGAGCATGTCCAAATTCGTAGTATTAGGATACATCCCATTTACCCAAAATCCCTTATATTTTGGGACGGAGGGAGTAGATGTCTATACAGCAGTCCATTAAAAAAATTATATTTTAAAACTAGTTCATTGGAACCCATATATATACCAGTGACAACTTGTTAATTATCTTTTTCCTCCACCTCTCTTCTCAATCTCTCATCCCTTGCCTTTTCTCTTCTACCTCCTTTGTGAGCTATGGGAGGTCCTAATGACAACAAACTTAGACTG]
[+] EMBL CK085167 [GAACATGCATGCATAGTTAATTGATTAATTAGGTTTGTTGATGATATGGTCCAGCTACGAACAATCTAATGAATACTTTGGTTTCGGTCGTCACTACTAGTAGTTAGTAAATGGGATAAAATCGATTTGATCTCCAGGCCAATTGGGTATTTTTGACACCATTCAATTTTCAATATTGTTAGACTAATTTAGGGTGGTTAAATGCTCCCTCCGTCCCTAAATATAAGAGATTTTGGTTGGATGTGACGTATTCTAGTACTGTGAATCTAGATAGGAGCATGTCCAAATTCGTAGTATTAGGATACATCCCATTTACCCAAAATCCCTTATATTTTGGGACGGAGGGAGTAGATGTCTATACAGCAGTCCATTAAAAAAATTATATTTTAAAACTAGTTCATTGGAACCCATATATATACCAGTGACAACTTGTTAATTATCTTTTTCCTCCACCTCTCTTCTCAATCTCTCATCCCTTGCCTTTTCTCTTCTACCTCCTTTGTGAGCTATGGGAGGTCCTAATGACAACAAACTTAGACTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2176#0 ATCTTGTGCGGTGCTTAGGTGCATACTGTTACCTTGTTGCACGTTGAACTGTGGGGATTA 60
consensus_2176#1 ------------------------------------------------------------
consensus_2176#0 TAAAAGGGTGCACTCCAGTTCTGTCTTGGATAGGCGCATGCTTTCCGCCTCTCCTTTTTG 120
consensus_2176#1 ---------------------------------------------GAACATGCATGCATA 15
* * * *
consensus_2176#0 TCTCACTACTTTATTCCATTTTTATTTCAATTTTTTTGGTGAAAAAACATCTAGTTAATT 180
consensus_2176#1 GTTAATTGATTAATTAGGTTTGTTGATGATATGGTCCAGCTACGAACAATCTAATGAAT- 74
* * * ** *** *** * * * * * * * ** ***** * ***
consensus_2176#0 ACCTTAATCCCTCTTAACA-TACTAATCTGTAATACACCCCTTTAAAAGTTAGCCTCACT 239
consensus_2176#1 ACTTTGGTTTCGGTCGTCACTACTAGTAGTTAGTAAATGGGAT--AAAATCGATTTGATC 132
** ** * * * ** ***** * ** ** * * *** * * *
consensus_2176#0 CCTGTACTGGTATTTTATTTTTATGAATCGAATAGCTTATCCCCTATTTCTATGAAATAG 299
consensus_2176#1 TCCAGGCCAATTGGGTATTTTTGACACC-----ATTCAATTTTCAATATTGTTAGACTAA 187
* * * ******* * * ** * ** * * * **
consensus_2176#0 TCACGACTCACTAAATACATTAATTTGTTATATGGGAGCTCTCAAATTTAGCCCTGTCAT 359
consensus_2176#1 TTTAGGGTGGTTAAATGC-TCCCTCCGTCCCTAAATA--TAAGAGATTTTGGTTGGATGT 244
* * * ***** * * * ** * * * **** * * *
consensus_2176#0 AAATTGTTCAGCCATTGGATCGAAGTGGCTATGAG-ATATCAACTATCATATCAATGTTT 418
consensus_2176#1 GACGTATTCTAGTACTG--TGAATCTAGATAGGAGCATGTCCAAATTCGT---AGTATTA 299
* * *** * ** * * * * ** *** ** ** * ** * * * **
consensus_2176#0 TTTTTTATCAAAGGAGTTCTAATGTCCTGCTATGATGCGAGGGGCATCTACTAGTTATAC 478
consensus_2176#1 GGATACATCCCATTTACCCAAAATCCCT--TATATTTTGGGACGGAGGGAGTAGATGTCT 357
* *** * * ** *** *** * * * * * * *** * *
consensus_2176#0 GTAGCCAGCAATTTATTTTTTCTGAAGGGAGGGAGTATGTGGGTAGTACTTTTGCTCAAA 538
consensus_2176#1 ATA--CAGCAGTCCATTA-----AAAAAATTATATTTTAAAACTAGTTCATTGGAACCCA 410
** ***** * *** ** * * * **** * ** * * *
consensus_2176#0 TATTTAGGGGAGAAAAGAACCCATAACTTCATTTACAAAGTTAATTCTTCTCTAAATACA 598
consensus_2176#1 TATATATACCAGTGAC-AACTTGTTAATTATCTTTTTCCTCCACCTCTCTTCTCAATCTC 469
*** ** ** * *** * * ** ** * *** *** ***
consensus_2176#0 TACTCCATTCGCCCATAAATATAAGGGATTTTTATTGGATGTAAGTATCCTAGTACTACG 658
consensus_2176#1 TCATCC-CTTGCCTTTTCTCTTCTACCTCCTTTGTGAGCTATGGGAGGTCC--TAATGAC 526
* *** * *** * * *** * * * * * * ** *
consensus_2176#0 AGTGAATTTGGATAGGAGTATGTCCAGATTCGTAGTATTAGGATACATCCCATCCACCCA 718
consensus_2176#1 AACAAACTTAGACTG--------------------------------------------- 541
* ** ** ** *
consensus_2176#0 AAATCCCTTATATTTTGGTACGGGATGGAGTATTCAACTAGATATCAGCTNTGATATTAT 778
consensus_2176#1 ------------------------------------------------------------
consensus_2176#0 NTNTACCATAGCAATAACCAA 799
consensus_2176#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||