cluster # 218

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Oryza sativa
cluster # 218 cluster # 218 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_218#0 length = 224 sequences # 1

consensus_218#1 length = 224 sequences # 1

consensusID : consensus_218#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [TCGTGCGAATTCGGCACGACTTGGGATTAAGTGTCGTCTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTAACAGGGACATCCAAGTTACTGGCACATATTTTATACTCTTATCGTGGAATGGGGTTATCTGTTGGTACCATGATTGCTGGATGGGACGAAACGGGCCCTGGTTTATATTATGTTGATAGTGAAGGAGGAAGACTTAAAGGCACTAGATTCT]

[+] EMBL AA750442             [TCGTGCGAATTCGGCACGACTTGGGATTAAGTGTCGTCTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTAACAGGGACATCCAAGTTACTGGCACATATTTTATACTCTTATCGTGGAATGGGGTTATCTGTTGGTACCATGATTGCTGGATGGGACGAAACGGGCCCTGGTTTATATTATGTTGATAGTGAAGGAGGAAGACTTAAAGGCACTAGATTCT]




>consensus_218#0
TCGTGCGAATTCGGCACGACTTGGGATTAAGTGTCGTCTGCATGAGTTGGCAAATAAAAG
GAGAATTTCAGTAACAGGGACATCCAAGTTACTGGCACATATTTTATACTCTTATCGTGG
AATGGGGTTATCTGTTGGTACCATGATTGCTGGATGGGACGAAACGGGCCCTGGTTTATA
TTATGTTGATAGTGAAGGAGGAAGACTTAAAGGCACTAGATTCT

consensusID : consensus_218#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [ACCTCCGTGCCAATTCGGCAGACTTGGGAATTAAGTGTCGTCTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTAACAGGAGCATTCAAGTTACTGGCAATATTTCATACTCTTATCGTGGAATGGGGTTATCTGTTGGTACCATGATTGCTGGATGGGCGAACGGCCTGGTTTATATTATGTTGATAGTGAAGAGGAGACTAAGGCACTAGATTCTCTGTG]

[+] EMBL AA750709             [ACCTCCGTGCCAATTCGGCAGACTTGGGAATTAAGTGTCGTCTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTAACAGGAGCATTCAAGTTACTGGCAATATTTCATACTCTTATCGTGGAATGGGGTTATCTGTTGGTACCATGATTGCTGGATGGGCGAACGGCCTGGTTTATATTATGTTGATAGTGAAGAGGAGACTAAGGCACTAGATTCTCTGTG]




>consensus_218#1
ACCTCCGTGCCAATTCGGCAGACTTGGGAATTAAGTGTCGTCTGCATGAGTTGGCAAATA
AAAGGAGAATTTCAGTAACAGGAGCATTCAAGTTACTGGCAATATTTCATACTCTTATCG
TGGAATGGGGTTATCTGTTGGTACCATGATTGCTGGATGGGCGAACGGCCTGGTTTATAT
TATGTTGATAGTGAAGAGGAGACTAAGGCACTAGATTCTCTGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_218#0      ----TCGTGCGAATTCGGCACGACTTGGGATTAAGTGTCGTCTGCATGAGTTGGCAAATA 56
consensus_218#1      ACCTCCGTGCCAATTCGGCAGACTTGGGAATTAAGTGTCGTCTGCATGAGTTGGCAAATA 60
                          ***** *********    * ** *******************************

consensus_218#0      AAAGGAGAATTTCAGTAACAGGGACATCCAAGTTACTGGCACATATTTTATACTCTTATC 116
consensus_218#1      AAAGGAGAATTTCAGTAACAGGAGCATTCAAGTTACTGGCA-ATATTTCATACTCTTATC 119
                     **********************  *** ************* ****** ***********

consensus_218#0      GTGGAATGGGGTTATCTGTTGGTACCATGATTGCTGGATGGGACGAAACGGGCCCTGGTT 176
consensus_218#1      GTGGAATGGGGTTATCTGTTGGTACCATGATTGCTGGATGGG--CGAACGG--CCTGGTT 175
                     ******************************************    *****  *******

consensus_218#0      TATATTATGTTGATAGTGAAGGAGGAAGACTTAAAGGCACTAGATTCT----- 224
consensus_218#1      TATATTATGTTGATAGTGAAG--AGGAGACT--AAGGCACTAGATTCTCTGTG 224
                     *********************   * *****  ***************