These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1461 fasta sequence [AACACAAGCACCGCGGCGTAGTACTACTACTTGCGCGCGCGTGTTAGATTCGCGTGCGAATCCAACACAAGCAGATCGATCACGCACGGTACGCCATGGGCGAGGCGGTGAAGGGGCCAGTGGTGGTGACGGGCGCGTCGGGCTTCGTCGGCTCATGGCTCGTCATGAAGCTCCTCCAGGCCGGCTACACCGTCCGCGCCACAGTGCGCGACCCCTCTAACGTTGGGAAGACGAAGCCGTTGCTGGAGCTGGCGGGGTCGAAGGAGAGGCTGACGCTGTGGAAGGCCGACCTGGGCGAGGAAGGCAGCTTCGACGCGGCGATCAGGGGTTGCACGGGCGTGTTCCACGTCGCGACGCCCATGGACTTCGAGTCCGAGGACCCGGAGAACGAGGTGGTCAAGCCCACCGTGGAAGGGATGCTGAGCATCATGCGGGCCTGCAGGGACGCCGGCACCGTCAAGCGCATCGTCTTCACCTCCTCCGCCGGGACCGTCAACATCGAGGAGCGGCAGCGCCCCTCCTACGACCACGACGACTGGAGCGACATCGACTTCTGCCGCCGCGTCAAGATGACCGGATGGATGTACTTCGTGTCCAAGTCATTGGCGGAGAAGGCCGCCATGGAATACGCGAGGGAGCACGGGCTGGACCTCATCAGCGTCATCCCCACGCTCGTCGTCGGGCCCTTCATCAGCAACGGGATGCCGCCGAGCCACGTCACCGCGCTGGCGCTGCTCACGGGGAACGAGGCCCACTACTCGATCCTGAAGCAGGTGCAGTTCGTCCACCTCGACGACCTCTGCGACGCCGAGATCTTCCTCTTCGAGAGCCCCGAGGCGCGCGGCCGCTACGTCTGCTCCTCCCACGACGCCACCATCCACGGCCTCGCGACGATGCTCGCGGACATGTTCCCGGAGTACGACGTGCCGCGGAGCTTTCCCGGGATCGACGCCGACCACCTCCAGCCGGTGCACTTCTCGTCGTGGAAGCTCCTCGCCCACGGGTTCAGGTTCAGGTACACGCTGGAGGACATGTTCGAGGCCGCCGTCCGGACGTGCAGGGAGAAGGGGCTTCTCCCGCCGCTGCCGCCACCGCCGACGACGGCCGTGGCCGGAGGAGACGGCTCGGCGGGTGTGGCCGGCGAGAAGGAACCGATACTGGGGAGGGGGACCGGGACGGCGGTTGGTGCTGAAACAGAAGCGTTGGTCAAATGAGTGTTGACTAGTGAGTCCAGAGAACGGTATTGAAATTGATCGTGTTTCGCTGCTCCTTGCCTCGTTGGCTTCGTCTATTTCACAATGCGAGATTTGGAATAAATCAGAGCGGTTAATCCTGTAAGTTCATATGTAACGTACCCATTTGATTTTTTATTGGTTACATATGGTTACTCCCTCCGGTTTCATTTTAATTGACACTTTGAACAATAATACGTTTTACAAGATATACCTTTGACTTTAAAAA] [+] EMBL AB003496 [AACACAAGCACCGCGGCGTAGTACTACTACTTGCGCGCGCGTGTTAGATTCGCGTGCGAATCCAACACAAGCAGATCGATCACGCACGGTACGCCATGGGCGAGGCGGTGAAGGGGCCAGTGGTGGTGACGGGCGCGTCGGGCTTCGTCGGCTCATGGCTCGTCATGAAGCTCCTCCAGGCCGGCTACACCGTCCGCGCCACAGTGCGCGACCCCTCTAACGTTGGGAAGACGAAGCCGTTGCTGGAGCTGGCGGGGTCGAAGGAGAGGCTGACGCTGTGGAAGGCCGACCTGGGCGAGGAAGGCAGCTTCGACGCGGCGATCAGGGGTTGCACGGGCGTGTTCCACGTCGCGACGCCCATGGACTTCGAGTCCGAGGACCCGGAGAACGAGGTGGTCAAGCCCACCGTGGAAGGGATGCTGAGCATCATGCGGGCCTGCAGGGACGCCGGCACCGTCAAGCGCATCGTCTTCACCTCCTCCGCCGGGACCGTCAACATCGAGGAGCGGCAGCGCCCCTCCTACGACCACGACGACTGGAGCGACATCGACTTCTGCCGCCGCGTCAAGATGACCGGATGGATGTACTTCGTGTCCAAGTCATTGGCGGAGAAGGCCGCCATGGAATACGCGAGGGAGCACGGGCTGGACCTCATCAGCGTCATCCCCACGCTCGTCGTCGGGCCCTTCATCAGCAACGGGATGCCGCCGAGCCACGTCACCGCGCTGGCGCTGCTCACGGGGAACGAGGCCCACTACTCGATCCTGAAGCAGGTGCAGTTCGTCCACCTCGACGACCTCTGCGACGCCGAGATCTTCCTCTTCGAGAGCCCCGAGGCGCGCGGCCGCTACGTCTGCTCCTCCCACGACGCCACCATCCACGGCCTCGCGACGATGCTCGCGGACATGTTCCCGGAGTACGACGTGCCGCGGAGCTTTCCCGGGATCGACGCCGACCACCTCCAGCCGGTGCACTTCTCGTCGTGGAAGCTCCTCGCCCACGGGTTCAGGTTCAGGTACACGCTGGAGGACATGTTCGAGGCCGCCGTCCGGACGTGCAGGGAGAAGGGGCTTCTCCCGCCGCTGCCGCCACCGCCGACGACGGCCGTGGCCGGAGGAGACGGCTCGGCGGGTGTGGCCGGCGAGAAGGAACCGATACTGGGGAGGGGGACCGGGACGGCGGTTGGTGCTGAAACAGAAGCGTTGGTCAAATGAGTGTTGACTAGTGAGTCCAGAGAACGGTATTGAAATTGATCGTGTTTCGCTGCTCCTTGCCTCGTTGGCTTCGTCTATTTCACAATGCGAGATTTGGAATAAATCAGAGCGGTTAATCCTGTAAGTTCATATGTAACGTACCCATTTGATTTTTTATTGGTTACATATGGTTACTCCCTCCGGTTTCATTTTAATTGACACTTTGAACAATAATACGTTTTACAAGATATACCTTTGACTTTAAAAA] consensusID : consensus_2187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1419 fasta sequence [TATATTCTGCGAATCCAACACAAGCACCGCGGCGTAGTACTACTACTTGCGCGCGCGTGTTAGATTCGCGTGCGAATCCAACACAAGCAGATCGATCACGCACGGTACGCCATGGGCGAGGCGGTGAAGGGGCCAGTGGTGGTGACGGGCGCGTCGGGCTTCGTCGGCTCATGGCTCGTCATGAAGCTCCTCCAGGCCGGCTACACCGTCCGCGCCACAGTGCGCGACCCCTCTAACGTTGGGAAGACGAAGCCGTTGCTGGAGCTGGCGGGGTCGAAGGAGAGGCTGACGCTGTGGAAGGCCGACCTGGGCGAGGAAGGCAGCTTCGACGCGGCGATCAGGGGTTGCACGGGCGTGTTCCACGTCGCGACGCCCATGGACTTCGAGTCCGAGGACCCGGAGAACGAGGTGATCAAGCCCACCGTGGAAGGGATGCTGAGCATCATGCGGGCCTGCAGGGACGCCGGCACCGTCAAGCGCATCGTCTTCACCTCCTCCGCCGGGACCGTCAACATCGAGGAGCGGCAGCGCCCCTCCTACGACCACGACGACTGGAGCGACATCGACTTCTGTCGCCGCGTCAAGATGACCGGATGGATGTACTTCGTGTCCAAGTCATTGGCGGAGAAGGCCGCCATGGAATACGCGAGGGAGCACGGGCTGGACCTCATCAGCGTCATCCCCACGCTCGTCGTCGGGCCCTTCATCAGCAACGGGATGCCGCCGAGCCACGTCACCGCGCTGGCGCTGCTCACGGGGAACGAGGCCCACTACTCGATCCTGAAGCAGGTGCAGTTCGTCCACCTCGACGACCTCTGCGATGCCGAGATCTTCCTCTTCGAGAGCCCCGAGGCGCGCGGCCGCTACGTCTGCTCCTCCCACGACGCCACCATCCACGGCCTCGCGACGATGCTCGCGGACATGTTCCCGGAGTACGACGTGCCGCGGAGCTTTCCCGGGATCGACGCCGACCACCTCCAGCCGGTGCACTTCTCGTCGTGGAAGCTCCTCGCCCACGGGTTCAGGTTCAGGTACACGCTGGAGGACATGTTCGAGGCCGCCGTCCGGACGTGCAGGGAGAAGGGGCTTCTCCCGCCGCTGCCGCCACCGCCGACGACGGCCGTGGCCGGAGGAGACGGCTCGGCGGGTGTGGCCGGCGAGAAGGAACCGATACTGGGGAGGGGGACCGGGACGGCGGTTGGTGCTGAAACAGAAGCGTTGGTCAAATGAGTGTTGACTAGTGAGTCCAGAGAACGGTATTGAAATTGATCGTGTTTCGCTGCGCCTTGCCTCGTTGGCTTCGTCTATTTCACAATGCGAGATTTGGAATAAATCAGAGCGGTTAATCCTGTAAGTTCATATGTAACGTACCCATTTGATTTTTTATTGGTTACATATGGTTACTCCCAAAAAAAAAAA] [+] EMBL OSDIHYFLA [TATATTCTGCGAATCCAACACAAGCACCGCGGCGTAGTACTACTACTTGCGCGCGCGTGTTAGATTCGCGTGCGAATCCAACACAAGCAGATCGATCACGCACGGTACGCCATGGGCGAGGCGGTGAAGGGGCCAGTGGTGGTGACGGGCGCGTCGGGCTTCGTCGGCTCATGGCTCGTCATGAAGCTCCTCCAGGCCGGCTACACCGTCCGCGCCACAGTGCGCGACCCCTCTAACGTTGGGAAGACGAAGCCGTTGCTGGAGCTGGCGGGGTCGAAGGAGAGGCTGACGCTGTGGAAGGCCGACCTGGGCGAGGAAGGCAGCTTCGACGCGGCGATCAGGGGTTGCACGGGCGTGTTCCACGTCGCGACGCCCATGGACTTCGAGTCCGAGGACCCGGAGAACGAGGTGATCAAGCCCACCGTGGAAGGGATGCTGAGCATCATGCGGGCCTGCAGGGACGCCGGCACCGTCAAGCGCATCGTCTTCACCTCCTCCGCCGGGACCGTCAACATCGAGGAGCGGCAGCGCCCCTCCTACGACCACGACGACTGGAGCGACATCGACTTCTGTCGCCGCGTCAAGATGACCGGATGGATGTACTTCGTGTCCAAGTCATTGGCGGAGAAGGCCGCCATGGAATACGCGAGGGAGCACGGGCTGGACCTCATCAGCGTCATCCCCACGCTCGTCGTCGGGCCCTTCATCAGCAACGGGATGCCGCCGAGCCACGTCACCGCGCTGGCGCTGCTCACGGGGAACGAGGCCCACTACTCGATCCTGAAGCAGGTGCAGTTCGTCCACCTCGACGACCTCTGCGATGCCGAGATCTTCCTCTTCGAGAGCCCCGAGGCGCGCGGCCGCTACGTCTGCTCCTCCCACGACGCCACCATCCACGGCCTCGCGACGATGCTCGCGGACATGTTCCCGGAGTACGACGTGCCGCGGAGCTTTCCCGGGATCGACGCCGACCACCTCCAGCCGGTGCACTTCTCGTCGTGGAAGCTCCTCGCCCACGGGTTCAGGTTCAGGTACACGCTGGAGGACATGTTCGAGGCCGCCGTCCGGACGTGCAGGGAGAAGGGGCTTCTCCCGCCGCTGCCGCCACCGCCGACGACGGCCGTGGCCGGAGGAGACGGCTCGGCGGGTGTGGCCGGCGAGAAGGAACCGATACTGGGGAGGGGGACCGGGACGGCGGTTGGTGCTGAAACAGAAGCGTTGGTCAAATGAGTGTTGACTAGTGAGTCCAGAGAACGGTATTGAAATTGATCGTGTTTCGCTGCGCCTTGCCTCGTTGGCTTCGTCTATTTCACAATGCGAGATTTGGAATAAATCAGAGCGGTTAATCCTGTAAGTTCATATGTAACGTACCCATTTGATTTTTTATTGGTTACATATGGTTACTCCCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2187#0 ----------------AACACAAGCACCGCGGCGTAGTACTACTACTTGCGCGCGCGTGT 44 consensus_2187#1 TATATTCTGCGAATCCAACACAAGCACCGCGGCGTAGTACTACTACTTGCGCGCGCGTGT 60 ******************************************** consensus_2187#0 TAGATTCGCGTGCGAATCCAACACAAGCAGATCGATCACGCACGGTACGCCATGGGCGAG 104 consensus_2187#1 TAGATTCGCGTGCGAATCCAACACAAGCAGATCGATCACGCACGGTACGCCATGGGCGAG 120 ************************************************************ consensus_2187#0 GCGGTGAAGGGGCCAGTGGTGGTGACGGGCGCGTCGGGCTTCGTCGGCTCATGGCTCGTC 164 consensus_2187#1 GCGGTGAAGGGGCCAGTGGTGGTGACGGGCGCGTCGGGCTTCGTCGGCTCATGGCTCGTC 180 ************************************************************ consensus_2187#0 ATGAAGCTCCTCCAGGCCGGCTACACCGTCCGCGCCACAGTGCGCGACCCCTCTAACGTT 224 consensus_2187#1 ATGAAGCTCCTCCAGGCCGGCTACACCGTCCGCGCCACAGTGCGCGACCCCTCTAACGTT 240 ************************************************************ consensus_2187#0 GGGAAGACGAAGCCGTTGCTGGAGCTGGCGGGGTCGAAGGAGAGGCTGACGCTGTGGAAG 284 consensus_2187#1 GGGAAGACGAAGCCGTTGCTGGAGCTGGCGGGGTCGAAGGAGAGGCTGACGCTGTGGAAG 300 ************************************************************ consensus_2187#0 GCCGACCTGGGCGAGGAAGGCAGCTTCGACGCGGCGATCAGGGGTTGCACGGGCGTGTTC 344 consensus_2187#1 GCCGACCTGGGCGAGGAAGGCAGCTTCGACGCGGCGATCAGGGGTTGCACGGGCGTGTTC 360 ************************************************************ consensus_2187#0 CACGTCGCGACGCCCATGGACTTCGAGTCCGAGGACCCGGAGAACGAGGTGGTCAAGCCC 404 consensus_2187#1 CACGTCGCGACGCCCATGGACTTCGAGTCCGAGGACCCGGAGAACGAGGTGATCAAGCCC 420 *************************************************** ******** consensus_2187#0 ACCGTGGAAGGGATGCTGAGCATCATGCGGGCCTGCAGGGACGCCGGCACCGTCAAGCGC 464 consensus_2187#1 ACCGTGGAAGGGATGCTGAGCATCATGCGGGCCTGCAGGGACGCCGGCACCGTCAAGCGC 480 ************************************************************ consensus_2187#0 ATCGTCTTCACCTCCTCCGCCGGGACCGTCAACATCGAGGAGCGGCAGCGCCCCTCCTAC 524 consensus_2187#1 ATCGTCTTCACCTCCTCCGCCGGGACCGTCAACATCGAGGAGCGGCAGCGCCCCTCCTAC 540 ************************************************************ consensus_2187#0 GACCACGACGACTGGAGCGACATCGACTTCTGCCGCCGCGTCAAGATGACCGGATGGATG 584 consensus_2187#1 GACCACGACGACTGGAGCGACATCGACTTCTGTCGCCGCGTCAAGATGACCGGATGGATG 600 ******************************** *************************** consensus_2187#0 TACTTCGTGTCCAAGTCATTGGCGGAGAAGGCCGCCATGGAATACGCGAGGGAGCACGGG 644 consensus_2187#1 TACTTCGTGTCCAAGTCATTGGCGGAGAAGGCCGCCATGGAATACGCGAGGGAGCACGGG 660 ************************************************************ consensus_2187#0 CTGGACCTCATCAGCGTCATCCCCACGCTCGTCGTCGGGCCCTTCATCAGCAACGGGATG 704 consensus_2187#1 CTGGACCTCATCAGCGTCATCCCCACGCTCGTCGTCGGGCCCTTCATCAGCAACGGGATG 720 ************************************************************ consensus_2187#0 CCGCCGAGCCACGTCACCGCGCTGGCGCTGCTCACGGGGAACGAGGCCCACTACTCGATC 764 consensus_2187#1 CCGCCGAGCCACGTCACCGCGCTGGCGCTGCTCACGGGGAACGAGGCCCACTACTCGATC 780 ************************************************************ consensus_2187#0 CTGAAGCAGGTGCAGTTCGTCCACCTCGACGACCTCTGCGACGCCGAGATCTTCCTCTTC 824 consensus_2187#1 CTGAAGCAGGTGCAGTTCGTCCACCTCGACGACCTCTGCGATGCCGAGATCTTCCTCTTC 840 ***************************************** ****************** consensus_2187#0 GAGAGCCCCGAGGCGCGCGGCCGCTACGTCTGCTCCTCCCACGACGCCACCATCCACGGC 884 consensus_2187#1 GAGAGCCCCGAGGCGCGCGGCCGCTACGTCTGCTCCTCCCACGACGCCACCATCCACGGC 900 ************************************************************ consensus_2187#0 CTCGCGACGATGCTCGCGGACATGTTCCCGGAGTACGACGTGCCGCGGAGCTTTCCCGGG 944 consensus_2187#1 CTCGCGACGATGCTCGCGGACATGTTCCCGGAGTACGACGTGCCGCGGAGCTTTCCCGGG 960 ************************************************************ consensus_2187#0 ATCGACGCCGACCACCTCCAGCCGGTGCACTTCTCGTCGTGGAAGCTCCTCGCCCACGGG 1004 consensus_2187#1 ATCGACGCCGACCACCTCCAGCCGGTGCACTTCTCGTCGTGGAAGCTCCTCGCCCACGGG 1020 ************************************************************ consensus_2187#0 TTCAGGTTCAGGTACACGCTGGAGGACATGTTCGAGGCCGCCGTCCGGACGTGCAGGGAG 1064 consensus_2187#1 TTCAGGTTCAGGTACACGCTGGAGGACATGTTCGAGGCCGCCGTCCGGACGTGCAGGGAG 1080 ************************************************************ consensus_2187#0 AAGGGGCTTCTCCCGCCGCTGCCGCCACCGCCGACGACGGCCGTGGCCGGAGGAGACGGC 1124 consensus_2187#1 AAGGGGCTTCTCCCGCCGCTGCCGCCACCGCCGACGACGGCCGTGGCCGGAGGAGACGGC 1140 ************************************************************ consensus_2187#0 TCGGCGGGTGTGGCCGGCGAGAAGGAACCGATACTGGGGAGGGGGACCGGGACGGCGGTT 1184 consensus_2187#1 TCGGCGGGTGTGGCCGGCGAGAAGGAACCGATACTGGGGAGGGGGACCGGGACGGCGGTT 1200 ************************************************************ consensus_2187#0 GGTGCTGAAACAGAAGCGTTGGTCAAATGAGTGTTGACTAGTGAGTCCAGAGAACGGTAT 1244 consensus_2187#1 GGTGCTGAAACAGAAGCGTTGGTCAAATGAGTGTTGACTAGTGAGTCCAGAGAACGGTAT 1260 ************************************************************ consensus_2187#0 TGAAATTGATCGTGTTTCGCTGCTCCTTGCCTCGTTGGCTTCGTCTATTTCACAATGCGA 1304 consensus_2187#1 TGAAATTGATCGTGTTTCGCTGCGCCTTGCCTCGTTGGCTTCGTCTATTTCACAATGCGA 1320 *********************** ************************************ consensus_2187#0 GATTTGGAATAAATCAGAGCGGTTAATCCTGTAAGTTCATATGTAACGTACCCATTTGAT 1364 consensus_2187#1 GATTTGGAATAAATCAGAGCGGTTAATCCTGTAAGTTCATATGTAACGTACCCATTTGAT 1380 ************************************************************ consensus_2187#0 TTTTTATTGGTTACATATGGTTACTCCCTCCGGTTTCATTTTAATTGACACTTTGAACAA 1424 consensus_2187#1 TTTTTATTGGTTACATATGGTTACTCCCAAAAAAAAAAA--------------------- 1419 **************************** * consensus_2187#0 TAATACGTTTTACAAGATATACCTTTGACTTTAAAAA 1461 consensus_2187#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||