cluster # 2201

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Oryza sativa
cluster # 2201 cluster # 2201 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2201#0 length = 676 sequences # 1

consensus_2201#1 length = 476 sequences # 1

consensusID : consensus_2201#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [TTTTGATATGAAAGGATATGACCAATAAAAAGAGCAGTACATCAGTCAAAAGAAAGAAAGTGCAAAGTAACTAATCGGCACAAAAATTACAGTAGTTAGTATATGTCATTGCACAGAAGGTTATCTGACCATCAGGGAATTTTTCTTGAATAGTAGTGAGGTTTGACTTGCTCAACAAGAACTCCATAATCTTTCCAGCTCTGGAGTGAAGTCTTGTGTATGTTCCTCTCATGACATGACATAGCAAAGCAGTTATCCCATCTATATGTACGGGTGATGGATTTTTAGCAGCCTCAAGTAGAACATTCCTTACACCTAACAACCAAAGGAAAAAAAGGAAGAGTAGCTTAGAATGACAAAAACATAAAAGTACCTATGCAAACAAGACCAGCAATCTTCACAACGCCCCCATTTTTATCGCATTGGCTAAGGCTTAAACCCTTCTACTTACTTGGTTGTATGAATATTTTCCTAAGCAAGAGAAGGGATATGACACATAAAAGAACATGCCTCAACAAACAGACTGCTAGGTAGTTGCATAAAAAAGTAGTTCTAATTATCTCANAAAAGAAAAAGTAGTACTAAGAGGCTAAAGACTTAATATAACCTGAAGTTACACAATTCACTTAGATACAGAATTTAGCATCATCAACATGGTGTAAGCAAGCANAAGTAC]

[+] EMBL CA761353             [TTTTGATATGAAAGGATATGACCAATAAAAAGAGCAGTACATCAGTCAAAAGAAAGAAAGTGCAAAGTAACTAATCGGCACAAAAATTACAGTAGTTAGTATATGTCATTGCACAGAAGGTTATCTGACCATCAGGGAATTTTTCTTGAATAGTAGTGAGGTTTGACTTGCTCAACAAGAACTCCATAATCTTTCCAGCTCTGGAGTGAAGTCTTGTGTATGTTCCTCTCATGACATGACATAGCAAAGCAGTTATCCCATCTATATGTACGGGTGATGGATTTTTAGCAGCCTCAAGTAGAACATTCCTTACACCTAACAACCAAAGGAAAAAAAGGAAGAGTAGCTTAGAATGACAAAAACATAAAAGTACCTATGCAAACAAGACCAGCAATCTTCACAACGCCCCCATTTTTATCGCATTGGCTAAGGCTTAAACCCTTCTACTTACTTGGTTGTATGAATATTTTCCTAAGCAAGAGAAGGGATATGACACATAAAAGAACATGCCTCAACAAACAGACTGCTAGGTAGTTGCATAAAAAAGTAGTTCTAATTATCTCANAAAAGAAAAAGTAGTACTAAGAGGCTAAAGACTTAATATAACCTGAAGTTACACAATTCACTTAGATACAGAATTTAGCATCATCAACATGGTGTAAGCAAGCANAAGTAC]




>consensus_2201#0
TTTTGATATGAAAGGATATGACCAATAAAAAGAGCAGTACATCAGTCAAAAGAAAGAAAG
TGCAAAGTAACTAATCGGCACAAAAATTACAGTAGTTAGTATATGTCATTGCACAGAAGG
TTATCTGACCATCAGGGAATTTTTCTTGAATAGTAGTGAGGTTTGACTTGCTCAACAAGA
ACTCCATAATCTTTCCAGCTCTGGAGTGAAGTCTTGTGTATGTTCCTCTCATGACATGAC
ATAGCAAAGCAGTTATCCCATCTATATGTACGGGTGATGGATTTTTAGCAGCCTCAAGTA
GAACATTCCTTACACCTAACAACCAAAGGAAAAAAAGGAAGAGTAGCTTAGAATGACAAA
AACATAAAAGTACCTATGCAAACAAGACCAGCAATCTTCACAACGCCCCCATTTTTATCG
CATTGGCTAAGGCTTAAACCCTTCTACTTACTTGGTTGTATGAATATTTTCCTAAGCAAG
AGAAGGGATATGACACATAAAAGAACATGCCTCAACAAACAGACTGCTAGGTAGTTGCAT
AAAAAAGTAGTTCTAATTATCTCANAAAAGAAAAAGTAGTACTAAGAGGCTAAAGACTTA
ATATAACCTGAAGTTACACAATTCACTTAGATACAGAATTTAGCATCATCAACATGGTGT
AAGCAAGCANAAGTAC

consensusID : consensus_2201#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 476
fasta sequence

                              [TTTTTTTTTTAAGCAACTCTTTTTTATCTATCTCATCGCACAACCTATGAATCAGCCCAGTTATGACTTCACGAATAGTAGAAGACCCATCAGGGAATTTTTCTGGAATAGTAGTGAGGTTTGACTGGGCTCAAACAAGAACTCCATAATCTTTCCAGCTCGTGGAGTGAAGTCTGGGGTATGTTCCTCTCATGACAGTGAGCATAGCAAAGCAGTTATCCCATCTATATGTACGGGGTGATGGATTTTTAGCACGCCTCAAGTAGAACATTCCTTACACCTTCTATTGGTGGACCATGGGGTGGCATTCCTCAGAACCAAATGAACACCAGATTCAGCATAAACATCTCTAACATAATCCTTGGGAAAAAATCTCAGGGACGCGGTGGATCCTGAGAACCTGAACAACATCTTTAACTAGATACTTTGGCGCAGTCACATCATTACATATGACCATGACGTGAAAGACCGTGTCC]

[-] EMBL BI812047             [TTTTTTTTTTAAGCAACTCTTTTTTATCTATCTCATCGCACAACCTATGAATCAGCCCAGTTATGACTTCACGAATAGTAGAAGACCCATCAGGGAATTTTTCTGGAATAGTAGTGAGGTTTGACTGGGCTCAAACAAGAACTCCATAATCTTTCCAGCTCGTGGAGTGAAGTCTGGGGTATGTTCCTCTCATGACAGTGAGCATAGCAAAGCAGTTATCCCATCTATATGTACGGGGTGATGGATTTTTAGCACGCCTCAAGTAGAACATTCCTTACACCTTCTATTGGTGGACCATGGGGTGGCATTCCTCAGAACCAAATGAACACCAGATTCAGCATAAACATCTCTAACATAATCCTTGGGAAAAAATCTCAGGGACGCGGTGGATCCTGAGAACCTGAACAACATCTTTAACTAGATACTTTGGCGCAGTCACATCATTACATATGACCATGACGTGAAAGACCGTGTCC]




>consensus_2201#1
TTTTTTTTTTAAGCAACTCTTTTTTATCTATCTCATCGCACAACCTATGAATCAGCCCAG
TTATGACTTCACGAATAGTAGAAGACCCATCAGGGAATTTTTCTGGAATAGTAGTGAGGT
TTGACTGGGCTCAAACAAGAACTCCATAATCTTTCCAGCTCGTGGAGTGAAGTCTGGGGT
ATGTTCCTCTCATGACAGTGAGCATAGCAAAGCAGTTATCCCATCTATATGTACGGGGTG
ATGGATTTTTAGCACGCCTCAAGTAGAACATTCCTTACACCTTCTATTGGTGGACCATGG
GGTGGCATTCCTCAGAACCAAATGAACACCAGATTCAGCATAAACATCTCTAACATAATC
CTTGGGAAAAAATCTCAGGGACGCGGTGGATCCTGAGAACCTGAACAACATCTTTAACTA
GATACTTTGGCGCAGTCACATCATTACATATGACCATGACGTGAAAGACCGTGTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2201#0      TTTTGATATGAAAGGATATGACCAATAAAAAGAGCAGTACATCAGTCAAAAGAAAGAAAG 60
consensus_2201#1      ---------------------------------------TTTTTTTTTTAAGCAACTCTT 21
                                                               *   *   *** **     

consensus_2201#0      TGCAAAGTAACTAATCGGCACAAAAATTACAGTAGTTAGTATATGTCATTGCACAGAAGG 120
consensus_2201#1      TTTTATCTATCTCATCG-CACAACCTATGAATCAGCCCAGTTATG--ACTTCACGAATAG 78
                      *   *  ** ** **** *****    *  *  **      ****  * * ***  *  *

consensus_2201#0      TTATCTGACCATCAGGGAATTTTTCTTGAATAGTAGTGAGGTTTGACTTG-CTCAA-CAA 178
consensus_2201#1      TAGAAGACCCATCAGGGAATTTTTCTGGAATAGTAGTGAGGTTTGACTGGGCTCAAACAA 138
                      *       ****************** ********************* * ***** ***

consensus_2201#0      GAACTCCATAATCTTTCCAGCTC-TGGAGTGAAGTCTTGTGTATGTTCCTCTCATGACA- 236
consensus_2201#1      GAACTCCATAATCTTTCCAGCTCGTGGAGTGAAGTCTGGGGTATGTTCCTCTCATGACAG 198
                      *********************** ************* * ******************* 

consensus_2201#0      TGA-CATAGCAAAGCAGTTATCCCATCTATATGTACGGG-TGATGGATTTTTAGCA-GCC 293
consensus_2201#1      TGAGCATAGCAAAGCAGTTATCCCATCTATATGTACGGGGTGATGGATTTTTAGCACGCC 258
                      *** *********************************** **************** ***

consensus_2201#0      TCAAGTAGAACATTCCTTACACCTAACAACCAAAGGAAAAAAAGGAAGAGTAGCTTAGAA 353
consensus_2201#1      TCAAGTAGAACATTCCTTACACCTT-CTATTGGTGGACCATGGGGTGGCATTCCTCAGAA 317
                      ************************  * *     ***  *   **  *  *  ** ****

consensus_2201#0      TGACAAAAACATAAAAGTACCTATGCAAACAAGACCAGCA--ATCTTCACAACGCCCCCA 411
consensus_2201#1      CCAAATGAACACCAGATT--CAGCATAAACATCTCTAACATAATCCTTGGGAAAA----A 371
                        * *  ****  * * *  *     *****   * * **  *** *    *       *

consensus_2201#0      TTTTTATCGCATTGGCTAAGGCTTAAACCCTTCTACTTACTTGGTTGTATGAATATTTT- 470
consensus_2201#1      ATCTCAGGGACGCGGTGGATCCTGAGAACCTG--AACAACATCTTTAACTAGATACTTTG 429
                       * * *  *    **   *  ** * * ***   *   ** *  **   *  *** *** 

consensus_2201#0      -CCTAAGCAAGAGAAGGGATATGAC----ACATAAAAGAACATGCCTCAACAAACAGACT 525
consensus_2201#1      GCGCAGTCACATCATTACATATGACCATGACGTGAAAGACCGTGTCC------------- 476
                       *  *  **    *    *******    ** * ***** * ** *              

consensus_2201#0      GCTAGGTAGTTGCATAAAAAAGTAGTTCTAATTATCTCANAAAAGAAAAAGTAGTACTAA 585
consensus_2201#1      ------------------------------------------------------------
                                                                                  

consensus_2201#0      GAGGCTAAAGACTTAATATAACCTGAAGTTACACAATTCACTTAGATACAGAATTTAGCA 645
consensus_2201#1      ------------------------------------------------------------
                                                                                  

consensus_2201#0      TCATCAACATGGTGTAAGCAAGCANAAGTAC 676
consensus_2201#1      -------------------------------