These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1779 fasta sequence [TCCGCCACTCCTCCCCCTCTCTTTTGCTACCTCCTTGCCTCCGCCGACCCTCCCCCTCTCCTCCACCTCCCTTCCCCTGTCTTCCGTCGCCCCTTCTCCTCTCCTCCTCTCTGCTCGGGGACGGCCAGATCCGCCGCCGCGTGCTTAGGGACAGCCAGATCCGCCGCCGCACGCTCGGGGGTATCCGGATCCGCCACCACAAGCACGGGGCAGCCCATTTAACGACTACTGTGGCTCCCTCAACTCCCTCAACCACCGTGTGCTTGGGGGCGGCCGAATCTACCACCGTGCACACGAGGACGGCCTACTCACAACAGCGGCTTCCTCAACTCCCTCAATCGCCACAGGCACAGGGGTGGCTGCTCAACGACGACGGGTCATCGATCATCATTGGACACCAATTAAGCAACAGCAATGGCGTCGAGGAGCATATCAAGCTGCACAACTGAGACGGCAAAAGGCATCCACAGGTTCGAGATCTTCAGTTACAGCATGATGAACACCGAAGCCGAAGACGACTCCATCCGGTCCGGCGTCTTCAACGTAGGAGGATTCGATTGGGCGTTGCTTTACTACCCTGACGGCATCGACGACGACAGCAAGGGCTACATCGGCGTCTACCTCGAGCTGATCAGCAAGAACGGCGAGCCATGGGCACTCGTCGACGTGAATCTGATCAACCAGCTGCAACCCGGGCAACCTCGTCAGCTGTTCACCAAGACCGATGTGCCTACCCCGTTCAGATCTTCAAGCTTTCAGGAGTCTACCTTGGGGTCTCTCAAGTGCATGAAGAGGAGCGATATTGAGAGCACTCCAGGGTTCATCGTCAATGACTGCATCGTGATCGAATGCAATGTTACTGTCATCTATGAGCCAAAAGTGTCTAAAACCAGGGCATTGTGTGACGCTGAAACTAGTTCGGCATTGCGCGAGATCGAGGTGCCTCCTATGGAGATATCGTCGGATTTCGCCAAGATGTTGAAGGACGGTGTAGGAGCAGATGTGACATTCAGAGTTGGAGAAGACACATTCCGTGCCCACAGGGCGGTGCTAGCTGCGAGGTCTCCAGTATTTCATGCTCAGCTCTGTGGACCGATGAAGGAGAAGAAGGAGACACAAATGCAGGAGATAACCATCCAAGACATGCAGCCATCTGTCTTCGAGGCTTTCCTCTATTTCATCTACACCGATTGTGTTCCAAGAATGGATGATCTTGGCAATGGTGAGAAGATGCATTTGATGATGCATTTGCTTAAGGCCGGTGACCGGTATGGATTGGAGAGGCTCAGGATCATGTGCGAGAGATTTCTAGCTACGAACCTCGACACGGAGCATGTATCTGCGATACTGGGTCTAGCTGACTTGCTAGATCTCAAGAAGCTCAAGGAAGCTTGCAGGGAGTTCATGGTCCCATCTGAGAGAATGGATGCCGTGGCTGCAAGTCAAGGGTACCAGCAGCTGAAGAGAGCATTTCCCTCTCTGGCGTTTGAAGTGTGGGAGAGGAGGAGCCGTGTTCGCAGGAATTAATTAACATCTTCTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTTTTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCACGCGTGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCAAATGGTTTTACCTTTAGATCGAGTTGTTTTTTAAACCTTACTCTCTTACCAACTCTCTTAAGTTTTTATGCTAGAAAT] [+] EMBL AK108671 [TCCGCCACTCCTCCCCCTCTCTTTTGCTACCTCCTTGCCTCCGCCGACCCTCCCCCTCTCCTCCACCTCCCTTCCCCTGTCTTCCGTCGCCCCTTCTCCTCTCCTCCTCTCTGCTCGGGGACGGCCAGATCCGCCGCCGCGTGCTTAGGGACAGCCAGATCCGCCGCCGCACGCTCGGGGGTATCCGGATCCGCCACCACAAGCACGGGGCAGCCCATTTAACGACTACTGTGGCTCCCTCAACTCCCTCAACCACCGTGTGCTTGGGGGCGGCCGAATCTACCACCGTGCACACGAGGACGGCCTACTCACAACAGCGGCTTCCTCAACTCCCTCAATCGCCACAGGCACAGGGGTGGCTGCTCAACGACGACGGGTCATCGATCATCATTGGACACCAATTAAGCAACAGCAATGGCGTCGAGGAGCATATCAAGCTGCACAACTGAGACGGCAAAAGGCATCCACAGGTTCGAGATCTTCAGTTACAGCATGATGAACACCGAAGCCGAAGACGACTCCATCCGGTCCGGCGTCTTCAACGTAGGAGGATTCGATTGGGCGTTGCTTTACTACCCTGACGGCATCGACGACGACAGCAAGGGCTACATCGGCGTCTACCTCGAGCTGATCAGCAAGAACGGCGAGCCATGGGCACTCGTCGACGTGAATCTGATCAACCAGCTGCAACCCGGGCAACCTCGTCAGCTGTTCACCAAGACCGATGTGCCTACCCCGTTCAGATCTTCAAGCTTTCAGGAGTCTACCTTGGGGTCTCTCAAGTGCATGAAGAGGAGCGATATTGAGAGCACTCCAGGGTTCATCGTCAATGACTGCATCGTGATCGAATGCAATGTTACTGTCATCTATGAGCCAAAAGTGTCTAAAACCAGGGCATTGTGTGACGCTGAAACTAGTTCGGCATTGCGCGAGATCGAGGTGCCTCCTATGGAGATATCGTCGGATTTCGCCAAGATGTTGAAGGACGGTGTAGGAGCAGATGTGACATTCAGAGTTGGAGAAGACACATTCCGTGCCCACAGGGCGGTGCTAGCTGCGAGGTCTCCAGTATTTCATGCTCAGCTCTGTGGACCGATGAAGGAGAAGAAGGAGACACAAATGCAGGAGATAACCATCCAAGACATGCAGCCATCTGTCTTCGAGGCTTTCCTCTATTTCATCTACACCGATTGTGTTCCAAGAATGGATGATCTTGGCAATGGTGAGAAGATGCATTTGATGATGCATTTGCTTAAGGCCGGTGACCGGTATGGATTGGAGAGGCTCAGGATCATGTGCGAGAGATTTCTAGCTACGAACCTCGACACGGAGCATGTATCTGCGATACTGGGTCTAGCTGACTTGCTAGATCTCAAGAAGCTCAAGGAAGCTTGCAGGGAGTTCATGGTCCCATCTGAGAGAATGGATGCCGTGGCTGCAAGTCAAGGGTACCAGCAGCTGAAGAGAGCATTTCCCTCTCTGGCGTTTGAAGTGTGGGAGAGGAGGAGCCGTGTTCGCAGGAATTAATTAACATCTTCTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTTTTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCACGCGTGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCAAATGGTTTTACCTTTAGATCGAGTTGTTTTTTAAACCTTACTCTCTTACCAACTCTCTTAAGTTTTTATGCTAGAAAT] consensusID : consensus_2202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 560 fasta sequence [TTGGGCAATGGTGAGCAAGCATGCATCTGATGATGCATTTGCTTAAGGCCGGTGACCGGTATGGATTGGAGCAGGCTCACGCGATCATGTGCGNACAGCATCCCTAGCCTACGCAACCTCGCACACGGGAGCATGTATCTGCGCATACTGGGTCTAGCTGACTTGCTACATCTCACACGCAAGCTCAAGGAAGCTTGCATGGAGTTCATGGTCCCATCTGACGACGAATGGATGCCGTGGCTGCAAGTCAAGGGTACCACGCACGCTGAAGAGAGCATTTCCCTCTCTGGCGTTTGACAGTGTGGGACGACGGACGGAGCCGTGTTCGCAGGAATTAATTAACATCTTCTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTTTTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCACGCGCTGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCCAATGGTTTTACCTTTAGAATCGAGTTGTTTTTTACAAAAAAAAAAAA] [+] EMBL BQ172816 [TTGGGCAATGGTGAGCAAGCATGCATCTGATGATGCATTTGCTTAAGGCCGGTGACCGGTATGGATTGGAGCAGGCTCACGCGATCATGTGCGNACAGCATCCCTAGCCTACGCAACCTCGCACACGGGAGCATGTATCTGCGCATACTGGGTCTAGCTGACTTGCTACATCTCACACGCAAGCTCAAGGAAGCTTGCATGGAGTTCATGGTCCCATCTGACGACGAATGGATGCCGTGGCTGCAAGTCAAGGGTACCACGCACGCTGAAGAGAGCATTTCCCTCTCTGGCGTTTGACAGTGTGGGACGACGGACGGAGCCGTGTTCGCAGGAATTAATTAACATCTTCTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTTTTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCACGCGCTGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCCAATGGTTTTACCTTTAGAATCGAGTTGTTTTTTACAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2202#0 TCCGCCACTCCTCCCCCTCTCTTTTGCTACCTCCTTGCCTCCGCCGACCCTCCCCCTCTC 60 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 CTCCACCTCCCTTCCCCTGTCTTCCGTCGCCCCTTCTCCTCTCCTCCTCTCTGCTCGGGG 120 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 ACGGCCAGATCCGCCGCCGCGTGCTTAGGGACAGCCAGATCCGCCGCCGCACGCTCGGGG 180 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 GTATCCGGATCCGCCACCACAAGCACGGGGCAGCCCATTTAACGACTACTGTGGCTCCCT 240 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 CAACTCCCTCAACCACCGTGTGCTTGGGGGCGGCCGAATCTACCACCGTGCACACGAGGA 300 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 CGGCCTACTCACAACAGCGGCTTCCTCAACTCCCTCAATCGCCACAGGCACAGGGGTGGC 360 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 TGCTCAACGACGACGGGTCATCGATCATCATTGGACACCAATTAAGCAACAGCAATGGCG 420 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 TCGAGGAGCATATCAAGCTGCACAACTGAGACGGCAAAAGGCATCCACAGGTTCGAGATC 480 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 TTCAGTTACAGCATGATGAACACCGAAGCCGAAGACGACTCCATCCGGTCCGGCGTCTTC 540 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 AACGTAGGAGGATTCGATTGGGCGTTGCTTTACTACCCTGACGGCATCGACGACGACAGC 600 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 AAGGGCTACATCGGCGTCTACCTCGAGCTGATCAGCAAGAACGGCGAGCCATGGGCACTC 660 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 GTCGACGTGAATCTGATCAACCAGCTGCAACCCGGGCAACCTCGTCAGCTGTTCACCAAG 720 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 ACCGATGTGCCTACCCCGTTCAGATCTTCAAGCTTTCAGGAGTCTACCTTGGGGTCTCTC 780 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 AAGTGCATGAAGAGGAGCGATATTGAGAGCACTCCAGGGTTCATCGTCAATGACTGCATC 840 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 GTGATCGAATGCAATGTTACTGTCATCTATGAGCCAAAAGTGTCTAAAACCAGGGCATTG 900 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 TGTGACGCTGAAACTAGTTCGGCATTGCGCGAGATCGAGGTGCCTCCTATGGAGATATCG 960 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 TCGGATTTCGCCAAGATGTTGAAGGACGGTGTAGGAGCAGATGTGACATTCAGAGTTGGA 1020 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 GAAGACACATTCCGTGCCCACAGGGCGGTGCTAGCTGCGAGGTCTCCAGTATTTCATGCT 1080 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 CAGCTCTGTGGACCGATGAAGGAGAAGAAGGAGACACAAATGCAGGAGATAACCATCCAA 1140 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 GACATGCAGCCATCTGTCTTCGAGGCTTTCCTCTATTTCATCTACACCGATTGTGTTCCA 1200 consensus_2202#1 ------------------------------------------------------------ consensus_2202#0 AGAATGGATGATCTTGGCAATGGTGAGAAG--ATGCATTTGATGATGCATTTGCTTAAGG 1258 consensus_2202#1 ------------TTGGGCAATGGTGAGCAAGCATGCATCTGATGATGCATTTGCTTAAGG 48 * ************ * ****** ********************* consensus_2202#0 CCGGTGACCGGTATGGATTGGAG-AGGCTCAGG--ATCATGTGCGAGAG--ATTTCTAGC 1313 consensus_2202#1 CCGGTGACCGGTATGGATTGGAGCAGGCTCACGCGATCATGTGCGNACAGCATCCCTAGC 108 *********************** ******* * ********** ** ***** consensus_2202#0 -TACG-AACCTCG-ACACGG-AGCATGTATCTGCG-ATACTGGGTCTAGCTGACTTGCTA 1368 consensus_2202#1 CTACGCAACCTCGCACACGGGAGCATGTATCTGCGCATACTGGGTCTAGCTGACTTGCTA 168 **** ******* ****** ************** ************************ consensus_2202#0 GATCTCAAG---AAGCTCAAGGAAGCTTGCAGGGAGTTCATGGTCCCATCTGAGA--GAA 1423 consensus_2202#1 CATCTCACACGCAAGCTCAAGGAAGCTTGCATGGAGTTCATGGTCCCATCTGACGACGAA 228 ****** ******************* ********************* *** consensus_2202#0 TGGATGCCGTGGCTGCAAGTCAAGGGTACCA-GCA-GCTGAAGAGAGCATTTCCCTCTCT 1481 consensus_2202#1 TGGATGCCGTGGCTGCAAGTCAAGGGTACCACGCACGCTGAAGAGAGCATTTCCCTCTCT 288 ******************************* *** ************************ consensus_2202#0 GGCGTTTGA-AGTGTGGGAGA---GGAGGAGCCGTGTTCGCAGGAATTAATTAACATCTT 1537 consensus_2202#1 GGCGTTTGACAGTGTGGGACGACGGACGGAGCCGTGTTCGCAGGAATTAATTAACATCTT 348 ********* ********* * ********************************* consensus_2202#0 CTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTT 1597 consensus_2202#1 CTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTT 408 ************************************************************ consensus_2202#0 TTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCA 1657 consensus_2202#1 TTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCA 468 ************************************************************ consensus_2202#0 CGCG-TGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCAAATGGTTTTACCTTT 1716 consensus_2202#1 CGCGCTGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCCAATGGTTTTACCTTT 528 **** *************************************** *************** consensus_2202#0 AGA-TCGAGTTGTTTTTTAAACCTTACTCTCTTACCAACTCTCTTAAGTTTTTATGCTAG 1775 consensus_2202#1 AGAATCGAGTTGTTTTTTACAAAAAAAAAAAA---------------------------- 560 *** *************** * * consensus_2202#0 AAAT 1779 consensus_2202#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||